Back to Long Tests report for BioC 3.21

This page was generated on 2025-04-12 23:55 -0400 (Sat, 12 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4634
palomino7Windows Server 2022 Datacenterx644.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" 4572
lconwaymacOS 12.7.1 Montereyx86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4599
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 6/30HostnameOS / ArchCHECK
biodbChebi 1.13.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-04-12 09:55 -0400 (Sat, 12 Apr 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: devel
git_last_commit: 686a27c
git_last_commit_date: 2024-10-29 11:04:36 -0400 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK  
palomino7Windows Server 2022 Datacenter / x64  OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK  

CHECK results for biodbChebi on lconway

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.13.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.13.0.tar.gz
StartedAt: 2025-04-12 16:01:09 -0400 (Sat, 12 Apr 2025)
EndedAt: 2025-04-12 16:04:51 -0400 (Sat, 12 Apr 2025)
EllapsedTime: 222.2 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R version 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
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Type 'demo()' for some demos, 'help()' for on-line help, or
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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-04-12 16:01:46.122][biodb::testContext]
biodb.INFO [2025-04-12 16:01:46.125][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-12 16:01:46.126][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-04-12 16:01:46.126][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-12 16:01:46.127][biodb::testContext]
biodb.INFO [2025-04-12 16:01:46.132][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-04-12 16:01:46.133][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-04-12 16:01:46.139][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-12 16:01:46.140][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-12 16:01:46.141][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-12 16:01:46.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.143][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-12 16:01:46.161][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-12 16:01:46.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.164][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-12 16:01:46.165][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-12 16:01:46.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.168][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-12 16:01:46.168][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-12 16:01:46.169][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-12 16:01:46.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.172][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-12 16:01:46.173][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-12 16:01:46.174][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-12 16:01:46.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.177][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-12 16:01:46.177][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-12 16:01:46.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.180][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-12 16:01:46.181][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-12 16:01:46.182][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-12 16:01:46.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.185][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-12 16:01:46.186][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-12 16:01:46.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.188][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-12 16:01:46.189][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-12 16:01:46.190][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-12 16:01:46.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.192][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-12 16:01:46.193][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-12 16:01:46.194][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-12 16:01:46.195][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-12 16:01:46.196][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-12 16:01:46.196][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-12 16:01:46.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.199][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-12 16:01:46.200][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-12 16:01:46.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.203][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-12 16:01:46.204][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-12 16:01:46.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.206][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-12 16:01:46.207][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-12 16:01:46.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.210][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-12 16:01:46.211][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-12 16:01:46.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.214][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-12 16:01:46.214][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-12 16:01:46.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.217][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-12 16:01:46.218][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-12 16:01:46.236][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-12 16:01:46.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.239][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-12 16:01:46.240][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-12 16:01:46.240][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-12 16:01:46.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.245][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-12 16:01:46.270][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-12 16:01:46.288][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-12 16:01:46.289][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-12 16:01:46.290][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-12 16:01:46.290][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-12 16:01:46.291][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-12 16:01:46.292][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-12 16:01:46.293][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-12 16:01:46.294][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-12 16:01:46.295][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-12 16:01:46.295][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-12 16:01:46.296][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-12 16:01:46.297][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-12 16:01:46.298][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:01:46.299][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-12 16:01:46.300][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-12 16:01:46.300][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-12 16:01:46.300][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-12 16:01:46.300][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-12 16:01:46.300][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-12 16:01:46.301][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-12 16:01:46.301][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-12 16:01:46.302][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-12 16:01:46.303][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-12 16:01:46.304][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-12 16:01:46.304][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-12 16:01:46.305][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-12 16:01:46.306][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:01:46.307][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-12 16:01:46.308][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-12 16:01:46.308][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-12 16:01:46.309][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:01:46.310][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-12 16:01:46.312][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-12 16:01:46.312][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-12 16:01:46.313][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-12 16:01:46.314][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-12 16:01:46.314][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-12 16:01:46.315][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-12 16:01:46.316][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-12 16:01:46.317][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-12 16:01:46.318][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-12 16:01:46.318][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-12 16:01:46.319][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-12 16:01:46.320][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-12 16:01:46.321][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-12 16:01:46.322][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:01:46.323][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-12 16:01:46.323][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-12 16:01:46.323][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-12 16:01:46.323][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-12 16:01:46.323][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-12 16:01:46.323][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-12 16:01:46.324][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-12 16:01:46.325][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-12 16:01:46.326][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-12 16:01:46.327][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-12 16:01:46.327][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-12 16:01:46.328][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-12 16:01:46.329][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-12 16:01:46.329][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:01:46.330][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-12 16:01:46.331][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-12 16:01:46.332][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-12 16:01:46.332][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:01:46.333][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-12 16:01:46.335][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-12 16:01:46.336][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-12 16:01:46.336][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-12 16:01:46.337][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-12 16:01:46.338][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-12 16:01:46.339][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-12 16:01:46.340][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-12 16:01:46.340][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-12 16:01:46.341][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-12 16:01:46.342][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-12 16:01:46.343][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-12 16:01:46.344][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-12 16:01:46.345][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-12 16:01:46.345][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:01:46.346][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-12 16:01:46.347][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:01:46.348][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-12 16:01:46.349][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-12 16:01:46.349][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-12 16:01:46.350][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-12 16:01:46.351][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-12 16:01:46.352][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-12 16:01:46.352][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-12 16:01:46.353][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:01:46.354][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-12 16:01:46.355][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-12 16:01:46.355][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-12 16:01:46.356][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:01:46.357][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-12 16:01:46.359][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-12 16:01:46.359][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-12 16:01:46.360][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-12 16:01:46.361][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-12 16:01:46.362][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-12 16:01:46.363][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-12 16:01:46.364][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-12 16:01:46.364][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-12 16:01:46.365][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-12 16:01:46.366][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-12 16:01:46.367][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-12 16:01:46.368][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-12 16:01:46.369][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-12 16:01:46.369][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:01:46.370][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-12 16:01:46.371][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:01:46.372][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-12 16:01:46.373][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-12 16:01:46.373][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-12 16:01:46.374][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-12 16:01:46.375][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-12 16:01:46.376][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-12 16:01:46.376][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-12 16:01:46.377][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:01:46.378][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-12 16:01:46.379][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-12 16:01:46.380][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-12 16:01:46.380][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:01:46.383][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-12 16:01:46.384][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.436][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.450][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-12 16:01:46.454][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-12 16:01:46.455][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-12 16:01:46.456][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-12 16:01:46.457][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-12 16:01:46.458][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-12 16:01:46.459][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-12 16:01:46.460][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-12 16:01:46.461][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-12 16:01:46.463][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-12 16:01:46.464][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-12 16:01:46.465][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-12 16:01:46.466][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-12 16:01:46.467][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-12 16:01:46.468][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-12 16:01:46.470][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-12 16:01:46.471][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-12 16:01:46.472][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-12 16:01:46.473][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-12 16:01:46.474][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-12 16:01:46.475][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-12 16:01:46.476][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-12 16:01:46.478][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-12 16:01:46.479][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-12 16:01:46.480][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-12 16:01:46.481][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-12 16:01:46.482][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-12 16:01:46.483][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-12 16:01:46.484][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-12 16:01:46.486][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-12 16:01:46.487][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-12 16:01:46.488][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-12 16:01:46.489][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-12 16:01:46.490][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-12 16:01:46.491][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-12 16:01:46.492][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-12 16:01:46.493][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-12 16:01:46.495][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-12 16:01:46.496][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-12 16:01:46.497][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-12 16:01:46.498][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-12 16:01:46.499][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-12 16:01:46.500][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-12 16:01:46.501][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-12 16:01:46.502][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-12 16:01:46.503][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-12 16:01:46.504][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-12 16:01:46.505][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-12 16:01:46.506][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-12 16:01:46.507][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-12 16:01:46.508][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-12 16:01:46.510][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-12 16:01:46.511][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-12 16:01:46.512][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-12 16:01:46.513][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-12 16:01:46.514][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-12 16:01:46.515][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-12 16:01:46.516][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-12 16:01:46.517][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-12 16:01:46.518][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-12 16:01:46.519][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-12 16:01:46.520][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-12 16:01:46.521][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-12 16:01:46.522][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-12 16:01:46.523][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-12 16:01:46.524][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-12 16:01:46.525][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-12 16:01:46.526][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-12 16:01:46.527][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-12 16:01:46.529][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-12 16:01:46.530][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-12 16:01:46.531][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-12 16:01:46.532][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-12 16:01:46.533][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-12 16:01:46.534][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-12 16:01:46.535][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-12 16:01:46.536][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-12 16:01:46.538][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-12 16:01:46.539][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-12 16:01:46.540][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-12 16:01:46.541][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-12 16:01:46.542][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-12 16:01:46.543][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-12 16:01:46.548][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-12 16:01:46.549][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-04-12 16:01:46.551][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-12 16:01:46.552][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.554][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:46.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:46.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:46.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:46.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:46.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:46.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:46.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:46.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:46.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:46.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:46.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:46.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:46.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:46.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:46.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:46.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:46.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:46.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:46.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:46.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:46.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:46.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:46.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:46.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:46.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:46.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:46.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:46.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.630][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:46.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:46.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:46.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:46.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:01:46.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:46.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:46.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:46.646][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-04-12 16:01:46.654][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-04-12 16:01:46.656][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-12 16:01:46.656][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-04-12 16:01:46.657][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-12 16:01:46.658][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-12 16:01:46.659][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-12 16:01:46.660][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-12 16:01:46.661][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-12 16:01:46.662][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-04-12 16:01:46.662][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-12 16:01:46.663][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-12 16:01:46.664][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-12 16:01:46.665][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-04-12 16:01:46.666][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-12 16:01:46.666][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-04-12 16:01:46.666][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-04-12 16:01:46.666][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-04-12 16:01:46.666][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-04-12 16:01:46.666][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-04-12 16:01:46.666][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-04-12 16:01:46.666][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-04-12 16:01:46.666][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-04-12 16:01:46.666][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-04-12 16:01:46.666][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-04-12 16:01:46.666][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-04-12 16:01:46.668][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-12 16:01:46.668][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-12 16:01:46.668][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-12 16:01:46.668][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-12 16:01:46.669][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-12 16:01:46.670][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-12 16:01:46.671][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-12 16:01:46.671][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-12 16:01:46.672][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-12 16:01:46.673][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-12 16:01:46.674][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-12 16:01:46.675][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:01:46.675][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-04-12 16:01:46.675][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-12 16:01:46.676][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-12 16:01:46.677][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-12 16:01:46.678][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-04-12 16:01:46.678][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-04-12 16:01:46.682][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-12 16:01:46.684][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-12 16:01:46.685][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-04-12 16:01:46.686][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-12 16:01:46.687][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-12 16:01:46.688][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-12 16:01:46.708][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-04-12 16:01:46.709][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-04-12 16:01:46.712][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-04-12 16:01:46.715][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-04-12 16:01:46.746][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-12 16:01:46.747][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-12 16:01:46.748][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-04-12 16:01:46.749][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-04-12 16:01:46.756][biodb::testThat]
biodb.INFO [2025-04-12 16:01:46.757][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-04-12 16:01:46.757][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:01:46.758][biodb::testThat]
biodb.TRACE[2025-04-12 16:01:46.761][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-04-12 16:01:46.763][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:01:46.765][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:01:46.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:01:46.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:46.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:46.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:46.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:46.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:46.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:01:46.793][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:46.794][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:46.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:46.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:46.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.810][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:46.811][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:46.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.833][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:46.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:46.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.836][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:46.837][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:46.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:46.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:46.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.843][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:46.844][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:46.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:46.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:46.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.850][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:46.851][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:46.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:46.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:46.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.857][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:46.858][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:46.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.860][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:46.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:46.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.864][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:01:46.865][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:46.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.866][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.867][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:01:46.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:46.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.871][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:46.872][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:46.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.873][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:46.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:46.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.877][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:46.878][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:46.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.880][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.887][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:46.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:46.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.891][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:01:46.891][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:46.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.893][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.894][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:01:46.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:46.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.897][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:46.898][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:46.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.900][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:46.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:46.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:46.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:46.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:46.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:46.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:46.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:46.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:46.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:46.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:46.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:46.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:46.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:46.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:46.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:46.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:46.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:46.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:46.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:46.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:46.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:46.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:01:46.964][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-04-12 16:01:46.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:46.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:46.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:46.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:46.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:46.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:46.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:46.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:46.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:46.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:47.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.007][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-12 16:01:47.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-12 16:01:47.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.010][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-12 16:01:47.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-12 16:01:47.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.014][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-12 16:01:47.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-12 16:01:47.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.017][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-12 16:01:47.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-12 16:01:47.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.103][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.104][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.133][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.135][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:47.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:47.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:47.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:47.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.152][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:47.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:47.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.156][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:47.157][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:47.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.158][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:47.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:47.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:47.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:47.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.173][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:47.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:47.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.176][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:47.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:47.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.179][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:47.180][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:47.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.182][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:47.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.203][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.203][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.205][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.226][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.227][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.229][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.240][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:47.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:47.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.243][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:47.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:47.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.247][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:47.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:47.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.250][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:47.251][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:47.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.257][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:47.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:47.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.267][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.270][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.274][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.277][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.278][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.279][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.280][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.290][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.293][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.296][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.299][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.300][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.303][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:47.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:47.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.316][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:47.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:47.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.319][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:47.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:47.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.322][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:47.323][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:47.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.324][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.325][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:47.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:47.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:47.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:47.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:47.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:47.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:47.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:47.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.345][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:47.346][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:47.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.348][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:47.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:47.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:47.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:47.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:47.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:47.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:47.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:47.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.369][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:47.370][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:47.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.372][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:47.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:47.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.387][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.388][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.389][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.394][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:47.395][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:47.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.396][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.401][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:47.402][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:47.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.403][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.407][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:47.408][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:47.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.414][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:47.415][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:47.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.417][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.421][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.422][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.428][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.428][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.435][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.436][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.441][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.442][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.448][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:47.449][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:47.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.455][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:47.456][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:47.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.457][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.471][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-04-12 16:01:47.503][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:01:47.504][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:01:47.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:01:47.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:47.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:47.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:47.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:47.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:47.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:01:47.516][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.517][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.536][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:47.537][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:47.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.539][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.540][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:47.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:47.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.543][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:47.544][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:47.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.546][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.547][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:47.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:47.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.550][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:47.551][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:47.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.553][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:47.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:47.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.557][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:47.558][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:47.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.560][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:47.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:47.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.564][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.565][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.568][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.571][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:01:47.572][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.575][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:01:47.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.578][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.579][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.581][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.585][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:47.586][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:47.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.587][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.589][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:47.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:47.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.592][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:01:47.593][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.595][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:01:47.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.599][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:47.600][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:47.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.601][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:47.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:47.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:01:47.642][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-04-12 16:01:47.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:47.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:47.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:47.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:47.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:47.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:47.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:47.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:47.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.679][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-12 16:01:47.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-12 16:01:47.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.682][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-12 16:01:47.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-12 16:01:47.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.685][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-12 16:01:47.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-12 16:01:47.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.689][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-12 16:01:47.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-12 16:01:47.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.766][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.767][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:47.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:47.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.790][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:47.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.803][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:47.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:47.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.806][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:47.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:47.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:47.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:47.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.813][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:47.813][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:47.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.815][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.816][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:47.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:47.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:47.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:47.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.830][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:47.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:47.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.833][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:47.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:47.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.837][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:47.837][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:47.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:47.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:47.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.850][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:01:47.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.860][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:01:47.861][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.867][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.868][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:01:47.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.887][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.888][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:47.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.911][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.912][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:47.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.924][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:47.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:47.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.928][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:47.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:47.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.931][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:47.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:47.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.934][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:47.935][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:47.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.937][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.938][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:47.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:47.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.948][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.952][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.955][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.958][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.959][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.961][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.962][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:47.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.973][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.976][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.979][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.983][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.984][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.985][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:47.986][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:47.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:47.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:48.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:48.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:48.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:48.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:48.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:48.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.010][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:48.011][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:48.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.013][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.014][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:48.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:48.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.034][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.035][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:48.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:48.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:48.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:48.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:48.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:48.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.058][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:48.058][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:48.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:48.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:48.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.071][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.072][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.079][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:48.079][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:48.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.085][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:48.086][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:48.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.088][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.092][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:48.093][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:48.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.099][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.100][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.106][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:48.107][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:48.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.113][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:48.114][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:48.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.120][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:48.121][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:48.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.131][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:01:48.132][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:48.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.133][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.138][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:48.138][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:48.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.144][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:48.145][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:48.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.152][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-04-12 16:01:48.153][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:01:48.154][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:01:48.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:01:48.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:48.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:48.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:48.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:48.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:48.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:01:48.165][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.166][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.172][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:48.172][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:48.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.175][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:48.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:48.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.178][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:48.179][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:48.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.181][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:48.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:48.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.185][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:48.185][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:48.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:48.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:48.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.191][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.192][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.193][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.198][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:48.198][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:48.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.201][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:48.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:48.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.204][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:01:48.205][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:48.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.208][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:01:48.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:48.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.211][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:48.212][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:48.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.213][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:48.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:48.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.217][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:48.218][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:48.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:48.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:48.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.225][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:01:48.225][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:48.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.228][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:01:48.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:48.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.231][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:48.232][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:48.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.234][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:48.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:48.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:48.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:48.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:48.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:48.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:48.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:48.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:01:48.272][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-04-12 16:01:48.274][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:48.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:48.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:48.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:48.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.281][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:48.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:48.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:48.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:48.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.293][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-12 16:01:48.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-12 16:01:48.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.297][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-12 16:01:48.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-12 16:01:48.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.300][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-12 16:01:48.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-12 16:01:48.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.303][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-12 16:01:48.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-12 16:01:48.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:48.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:48.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:48.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:48.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:48.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:48.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:48.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:48.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.367][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.372][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:48.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:48.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.387][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:48.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:48.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:48.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:48.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.394][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:48.395][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:48.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.396][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.397][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:48.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:48.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:48.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:48.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:48.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:48.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:48.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:48.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.417][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:48.418][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:48.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:48.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:48.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.437][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.441][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.441][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.443][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.454][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:48.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:48.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.458][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:48.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:48.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.461][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:48.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:48.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.464][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:48.465][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:48.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.468][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:48.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:48.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:48.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:48.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:48.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:48.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:48.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:48.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.488][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:48.489][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:48.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:48.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:48.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:48.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:48.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:48.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:48.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:48.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:48.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.515][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:48.516][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:48.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:48.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:48.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.528][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:48.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:48.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.532][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:48.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:48.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.535][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:48.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:48.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.538][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:48.539][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:48.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.541][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.542][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:48.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:48.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.552][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:01:48.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:48.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.555][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:01:48.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:48.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.559][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:01:48.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:48.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.562][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:01:48.563][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:48.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.564][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.565][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:01:48.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:48.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:48.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:48.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.578][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:48.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:48.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:48.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:48.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.585][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:48.586][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:48.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.587][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.588][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:48.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:48.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.598][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:48.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:48.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.602][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:48.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:48.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.605][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:48.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:48.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.608][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:48.609][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:48.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.611][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:48.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:48.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.626][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:48.627][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:48.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.629][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.633][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:48.634][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:48.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.635][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.640][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:48.641][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:48.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.642][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.646][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:48.647][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:48.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.653][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.654][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:48.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.659][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:48.660][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:48.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.661][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.666][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:48.667][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:48.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.672][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:48.673][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:48.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.679][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:01:48.680][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:48.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.686][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:48.686][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:48.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.688][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:48.692][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:48.693][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:48.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:48.695][ef$get] fields variable is a list.
biodb.INFO [2025-04-12 16:01:48.702][biodb::testThat]
biodb.INFO [2025-04-12 16:01:48.703][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-04-12 16:01:48.703][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:01:48.704][biodb::testThat]
biodb.DEBUG[2025-04-12 16:01:48.706][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-04-12 16:01:48.711][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2025-04-12 16:01:48.715][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.INFO [2025-04-12 16:01:48.716][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649" for "chebi-0c5076ac2a43d16dbce503a44b09f649".
biodb.TRACE[2025-04-12 16:01:48.717][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-04-12 16:01:48.718][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:01:48.719][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:01:48.720][conn$getEntryContent] 3 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:01:48.721][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:01:48.721][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:01:48.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:01:48.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:48.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:48.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:48.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:48.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:48.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:48.735][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.DEBUG[2025-04-12 16:01:48.757][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:01:48.758][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:01:48.758][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.TRACE[2025-04-12 16:01:50.046][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
biodb.DEBUG[2025-04-12 16:01:50.538][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:01:50.540][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.content"
biodb.TRACE[2025-04-12 16:01:50.562][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.request"
biodb.DEBUG[2025-04-12 16:01:50.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:01:50.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:50.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:50.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:50.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:50.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:50.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:50.588][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
biodb.DEBUG[2025-04-12 16:01:50.599][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:01:50.600][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:01:50.611][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
biodb.TRACE[2025-04-12 16:01:50.961][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
biodb.DEBUG[2025-04-12 16:01:51.543][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:01:51.545][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65267cab26ad2d71ed08b12751f9bef2.content"
biodb.TRACE[2025-04-12 16:01:51.548][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65267cab26ad2d71ed08b12751f9bef2.request"
biodb.DEBUG[2025-04-12 16:01:51.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:01:51.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:51.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:51.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:51.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:51.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:51.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:51.559][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.DEBUG[2025-04-12 16:01:51.568][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:01:51.569][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:01:51.570][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.TRACE[2025-04-12 16:01:51.909][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
biodb.DEBUG[2025-04-12 16:01:52.246][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:01:52.248][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.content"
biodb.TRACE[2025-04-12 16:01:52.251][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.request"
biodb.TRACE[2025-04-12 16:01:52.253][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml"
biodb.DEBUG[2025-04-12 16:01:52.255][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:01:52.256][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-04-12 16:01:52.256][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-04-12 16:01:52.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:01:52.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:52.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:52.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:52.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:52.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:52.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:01:52.268][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.269][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.270][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.274][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:52.275][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:52.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.277][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.278][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:52.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:52.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.281][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:52.282][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:52.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.283][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:52.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:52.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.287][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:52.288][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:52.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:52.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:52.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.293][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:52.294][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:52.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.295][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:52.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:52.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.299][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:52.300][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:52.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.303][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:52.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:52.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.306][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:01:52.307][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:52.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.309][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:01:52.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:52.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.313][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:52.313][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:52.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.315][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:52.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:52.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.319][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:52.320][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:52.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:52.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:52.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.326][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:01:52.327][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:52.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.335][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.336][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:01:52.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:52.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.339][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:52.340][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:52.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.342][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.343][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:52.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:52.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:52.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:52.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:52.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:52.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:52.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:52.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:01:52.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:01:52.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:52.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:52.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:52.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:52.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:52.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:01:52.378][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.379][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.380][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.384][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:52.385][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:52.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.387][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.388][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:52.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:52.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.391][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:52.392][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:52.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.393][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:52.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:52.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.398][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:52.399][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:52.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:52.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:52.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.404][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:52.405][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:52.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:52.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:52.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.411][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:52.411][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:52.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.413][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.414][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:52.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:52.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.417][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:01:52.418][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:52.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.419][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.420][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:01:52.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:52.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.427][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:52.428][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:52.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:52.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:52.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.433][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:52.434][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:52.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:52.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:52.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.440][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:01:52.441][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:52.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.443][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:01:52.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:52.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.447][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:52.447][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:52.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.449][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.450][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:52.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:52.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:52.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:52.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:52.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:52.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:52.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:52.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:01:52.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:01:52.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:52.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:52.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:52.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:52.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:52.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:01:52.484][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.485][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.491][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:52.492][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:52.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.494][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:52.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:52.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.498][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:52.499][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:52.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:52.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:52.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.504][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:52.505][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:52.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.507][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:52.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:52.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.532][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:52.533][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:52.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.535][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:52.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:52.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.540][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:52.540][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:52.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.543][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:52.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:52.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.546][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:01:52.547][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:52.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.548][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.549][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:01:52.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:52.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.552][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:52.553][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:52.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.554][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:52.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:52.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.558][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:52.559][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:52.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.561][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:52.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:52.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.565][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:01:52.566][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:52.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.569][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:01:52.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:52.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.572][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:52.572][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:52.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.575][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:52.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:52.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:52.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:52.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:52.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:52.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:52.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:52.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:52.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:52.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:01:52.631][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-04-12 16:01:52.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-12 16:01:52.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-12 16:01:52.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-12 16:01:52.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-12 16:01:52.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-12 16:01:52.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-12 16:01:52.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-12 16:01:52.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-12 16:01:52.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-12 16:01:52.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-12 16:01:52.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-12 16:01:52.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-12 16:01:52.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-12 16:01:52.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-12 16:01:52.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-12 16:01:52.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-12 16:01:52.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-12 16:01:52.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-12 16:01:52.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-12 16:01:52.677][biodb::testThat]
biodb.INFO [2025-04-12 16:01:52.678][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-04-12 16:01:52.678][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:01:52.679][biodb::testThat]
biodb.TRACE[2025-04-12 16:01:52.681][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:52.682][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:52.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.684][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:01:52.685][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-04-12 16:01:52.707][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:52.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:52.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:52.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:52.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:52.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:52.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:52.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:52.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:01:52.723][function(conn, opt)] With value "squalene".
biodb.DEBUG[2025-04-12 16:01:52.725][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-04-12 16:01:52.727][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:01:52.727][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:01:52.728][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.TRACE[2025-04-12 16:01:53.062][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl).
biodb.DEBUG[2025-04-12 16:01:53.560][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:01:53.562][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content"
biodb.TRACE[2025-04-12 16:01:53.565][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.request"
biodb.DEBUG[2025-04-12 16:01:53.569][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:01:53.572][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:01:53.572][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:01:53.574][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:01:53.986][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:01:54.394][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:01:54.396][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content"
biodb.TRACE[2025-04-12 16:01:54.399][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.request"
biodb.DEBUG[2025-04-12 16:01:54.402][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-04-12 16:01:54.413][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:54.414][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:54.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.417][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:54.417][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:54.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.419][ef$get] fields variable is a list.
biodb.INFO [2025-04-12 16:01:54.423][biodb::testThat]
biodb.INFO [2025-04-12 16:01:54.423][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-04-12 16:01:54.424][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:01:54.425][biodb::testThat]
biodb.TRACE[2025-04-12 16:01:54.445][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:54.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:54.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:54.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:54.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.452][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:54.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:54.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:01:54.508][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:01:54.510][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:01:54.522][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-12 16:01:54.523][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:01:54.524][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2025-04-12 16:01:54.539][biodb::testThat]
biodb.INFO [2025-04-12 16:01:54.540][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-04-12 16:01:54.541][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:01:54.542][biodb::testThat]
biodb.TRACE[2025-04-12 16:01:54.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:54.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:54.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:54.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:54.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:54.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:54.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:54.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:54.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:54.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:54.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:54.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:54.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.574][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-12 16:01:54.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-12 16:01:54.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.577][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-12 16:01:54.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-12 16:01:54.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.580][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-12 16:01:54.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-12 16:01:54.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.583][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-12 16:01:54.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-12 16:01:54.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:54.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:54.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:54.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:54.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:54.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:54.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:54.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:54.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:54.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:54.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:54.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:54.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.610][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-12 16:01:54.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-12 16:01:54.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.614][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-12 16:01:54.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-12 16:01:54.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.616][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-12 16:01:54.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-12 16:01:54.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:54.620][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-12 16:01:54.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-12 16:01:54.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:54.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-12 16:01:54.628][biodb::testThat]
biodb.INFO [2025-04-12 16:01:54.629][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-04-12 16:01:54.630][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:01:54.635][biodb::testThat]
biodb.INFO [2025-04-12 16:01:54.643][biodb::testThat]
biodb.INFO [2025-04-12 16:01:54.644][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-04-12 16:01:54.645][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:01:54.645][biodb::testThat]
biodb.INFO [2025-04-12 16:01:54.654][biodb::testThat]
biodb.INFO [2025-04-12 16:01:54.655][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-04-12 16:01:54.655][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:01:54.656][biodb::testThat]
biodb.DEBUG[2025-04-12 16:01:54.659][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2025-04-12 16:01:55.102][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2025-04-12 16:01:56.108][biodb::testThat]
biodb.INFO [2025-04-12 16:01:56.109][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-04-12 16:01:56.109][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:01:56.110][biodb::testThat]
biodb.DEBUG[2025-04-12 16:01:56.706][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2025-04-12 16:01:57.058][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:57.059][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:57.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:57.061][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:57.062][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:57.062][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:57.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:57.064][ef$get] fields variable is a list.
biodb.INFO [2025-04-12 16:01:57.066][biodb::testThat]
biodb.INFO [2025-04-12 16:01:57.066][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-04-12 16:01:57.067][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:01:57.068][biodb::testThat]
biodb.TRACE[2025-04-12 16:01:57.079][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:57.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:57.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:57.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:57.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:57.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:57.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:57.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:57.085][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:57.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:57.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:57.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:01:57.155][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:01:57.157][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:01:57.158][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-12 16:01:57.159][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:01:57.161][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-12 16:01:57.217][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:01:57.220][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:01:57.221][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-12 16:01:57.222][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:01:57.223][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2025-04-12 16:01:57.236][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:01:57.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:01:57.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:57.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:57.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:57.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:57.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:57.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:57.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:57.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:57.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:57.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:57.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:57.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:57.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:57.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:57.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:57.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:57.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:57.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:57.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:57.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:57.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:57.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:01:57.265][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:01:57.267][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:01:57.268][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:01:57.274][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:01:57.611][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:01:57.944][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:01:57.946][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content"
biodb.TRACE[2025-04-12 16:01:57.949][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.request"
biodb.DEBUG[2025-04-12 16:01:57.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:01:57.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:57.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:57.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:57.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:57.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:57.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:57.960][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-04-12 16:01:57.996][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:01:57.998][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2025-04-12 16:01:57.999][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:01:58.000][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:01:58.001][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:01:58.002][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:01:58.003][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:01:58.003][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:01:58.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:01:58.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:58.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:58.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:58.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:58.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:58.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:58.031][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.DEBUG[2025-04-12 16:01:58.033][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:01:58.034][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:01:58.035][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.TRACE[2025-04-12 16:01:58.398][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288).
biodb.DEBUG[2025-04-12 16:01:58.734][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:01:58.736][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.content"
biodb.TRACE[2025-04-12 16:01:58.739][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.request"
biodb.TRACE[2025-04-12 16:01:58.741][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml"
biodb.DEBUG[2025-04-12 16:01:58.742][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:01:58.743][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:01:58.744][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:01:58.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:01:58.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:58.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:58.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:58.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:58.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:58.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:01:58.755][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:58.756][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:58.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:58.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:58.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.762][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:58.763][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:58.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.766][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:01:58.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:01:58.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.769][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:58.769][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:58.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:01:58.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:01:58.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.775][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:58.776][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:58.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:01:58.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:01:58.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.781][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:58.782][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:58.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:01:58.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:01:58.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.787][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:58.795][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:01:58.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.797][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:01:58.798][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:58.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.800][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:01:58.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:58.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.803][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:58.804][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:58.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:58.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:01:58.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.809][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:58.810][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:58.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:01:58.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:01:58.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.815][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:01:58.816][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:58.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.818][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:01:58.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:01:58.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.821][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:58.822][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:58.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:01:58.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:01:58.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:58.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:58.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:58.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:58.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:58.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:58.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:01:58.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:01:58.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:58.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:58.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:58.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:58.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:58.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:58.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:58.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:58.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:58.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:58.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:01:58.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:01:58.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:01:58.858][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-04-12 16:01:58.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:58.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:58.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:58.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:58.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:58.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:58.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:58.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:58.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:01:58.879][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:01:58.882][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:01:58.883][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:01:58.885][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:01:59.224][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:01:59.557][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:01:59.559][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content"
biodb.TRACE[2025-04-12 16:01:59.562][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.request"
biodb.DEBUG[2025-04-12 16:01:59.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:01:59.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:59.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:59.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:59.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:59.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:59.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:01:59.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:59.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:59.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:59.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:59.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:59.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:59.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:59.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:01:59.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:59.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:01:59.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:01:59.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:01:59.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:01:59.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:59.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:59.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:59.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:59.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:59.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:59.603][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-04-12 16:01:59.603][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:01:59.605][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2025-04-12 16:01:59.605][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:01:59.606][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:01:59.607][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:01:59.608][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:01:59.609][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:01:59.610][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:01:59.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:01:59.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:01:59.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:01:59.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:01:59.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:01:59.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:01:59.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:01:59.627][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.DEBUG[2025-04-12 16:01:59.629][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:01:59.630][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:01:59.631][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.TRACE[2025-04-12 16:01:59.986][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892).
biodb.DEBUG[2025-04-12 16:02:00.320][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:00.322][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.content"
biodb.TRACE[2025-04-12 16:02:00.325][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.request"
biodb.TRACE[2025-04-12 16:02:00.327][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml"
biodb.DEBUG[2025-04-12 16:02:00.328][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:00.329][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:00.330][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:00.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:00.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:00.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:00.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:00.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:00.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:00.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:00.341][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:00.342][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:00.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:00.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:00.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.348][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:00.348][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:00.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.351][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:00.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:00.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.354][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:00.355][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:00.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.358][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:00.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:00.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.361][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:00.362][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:00.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.364][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:00.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:00.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.368][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:00.369][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:00.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.371][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:00.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:00.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.375][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:00.376][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:00.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.377][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.378][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:00.379][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:00.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.380][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.381][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:00.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:00.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.385][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:00.390][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:00.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:00.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:00.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.398][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:00.399][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:00.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:00.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:00.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.405][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:00.406][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:00.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.407][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.408][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:00.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:00.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.412][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:00.412][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:00.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.414][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:00.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:00.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:00.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:00.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:00.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:00.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:00.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:00.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:00.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:00.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:00.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:00.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:00.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:00.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:00.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:00.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:00.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:00.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:00.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:00.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:00.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:00.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:00.450][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-04-12 16:02:00.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:00.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:00.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:00.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:00.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:00.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:00.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:00.483][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:00.486][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:02:00.487][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-12 16:02:00.488][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:02:00.489][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-12 16:02:00.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:00.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:00.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:00.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:00.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:00.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:00.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:00.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:00.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:00.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:00.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:00.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:00.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:00.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:00.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:00.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:00.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:00.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:00.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:00.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:00.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:00.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:00.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:00.520][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-04-12 16:02:00.521][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:00.522][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2025-04-12 16:02:00.523][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:00.523][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:00.524][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:00.525][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:00.526][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:00.526][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:00.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:00.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:00.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:00.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:00.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:00.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:00.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:00.538][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2025-04-12 16:02:00.540][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:00.540][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:00.541][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2025-04-12 16:02:00.911][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2025-04-12 16:02:01.245][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:01.247][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2025-04-12 16:02:01.249][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2025-04-12 16:02:01.252][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2025-04-12 16:02:01.253][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:01.254][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:01.255][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:01.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:01.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:01.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:01.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:01.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:01.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:01.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:01.273][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:01.274][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:01.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.276][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:01.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:01.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.280][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:01.281][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:01.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.283][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.284][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:01.284][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:01.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.286][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.287][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:01.288][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:01.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.290][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.291][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:01.292][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:01.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.293][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.294][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:01.295][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:01.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.297][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.297][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:01.298][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:01.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.300][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.301][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:01.302][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:01.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.303][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.304][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:01.305][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:01.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.306][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.307][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:01.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:01.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.311][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:01.312][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:01.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.313][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.314][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:01.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:01.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.317][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:01.318][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:01.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:01.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:01.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:01.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:01.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:01.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:01.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:01.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:01.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:01.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:01.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:01.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:01.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:01.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:01.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:01.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:01.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:01.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:01.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:01.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:01.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:01.356][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-04-12 16:02:01.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:01.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:01.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:01.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:01.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:01.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:01.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:01.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:01.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:01.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:01.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:01.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:01.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:01.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:01.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:01.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:01.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:01.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:01.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:01.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:01.382][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-04-12 16:02:01.382][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:01.384][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2025-04-12 16:02:01.385][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:01.386][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:01.386][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:01.387][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:01.388][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:01.389][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:01.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:01.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:01.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:01.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:01.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:01.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:01.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:01.400][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2025-04-12 16:02:01.402][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:01.403][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:01.404][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2025-04-12 16:02:01.763][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2025-04-12 16:02:02.100][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:02.102][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2025-04-12 16:02:02.105][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2025-04-12 16:02:02.107][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2025-04-12 16:02:02.109][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:02.110][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:02.111][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:02.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:02.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:02.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:02.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:02.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:02.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:02.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:02.129][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:02.130][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:02.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:02.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:02.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.135][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:02.136][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:02.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.138][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:02.139][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:02.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.142][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:02.142][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:02.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.144][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.145][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:02.146][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:02.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.148][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:02.149][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:02.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.152][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:02.152][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:02.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.155][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:02.156][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:02.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.158][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:02.159][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:02.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.161][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:02.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:02.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.165][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:02.165][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:02.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.168][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:02.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:02.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.171][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:02.172][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:02.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.173][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:02.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:02.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:02.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:02.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:02.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:02.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:02.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:02.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:02.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:02.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:02.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:02.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:02.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:02.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:02.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:02.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:02.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:02.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:02.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:02.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:02.209][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-04-12 16:02:02.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:02.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:02.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:02.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:02.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:02.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:02.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:02.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:02.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:02.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:02.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:02.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:02.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:02.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:02.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:02.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:02.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:02.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:02.234][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-04-12 16:02:02.235][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:02.237][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2025-04-12 16:02:02.238][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:02.239][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:02.240][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:02.241][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:02.241][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:02.242][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:02.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:02.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:02.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:02.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:02.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:02.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:02.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:02.254][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2025-04-12 16:02:02.256][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:02.257][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:02.258][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2025-04-12 16:02:02.606][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2025-04-12 16:02:02.939][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:02.941][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2025-04-12 16:02:02.944][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2025-04-12 16:02:02.946][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2025-04-12 16:02:02.948][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:02.949][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:02.950][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:02.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:02.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:02.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:02.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:02.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:02.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:02.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:02.961][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:02.962][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:02.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.963][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:02.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:02.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.974][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:02.975][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:02.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.977][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.977][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:02.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:02.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.980][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.981][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:02.982][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:02.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.984][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:02.985][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:02.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.986][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.988][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:02.988][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:02.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.991][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:02.992][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:02.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.993][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.994][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:02.995][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:02.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:02.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:02.998][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:02.999][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:02.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:03.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:03.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.004][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:03.005][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:03.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.007][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.008][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:03.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:03.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.011][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:03.012][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:03.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.013][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:03.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:03.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:03.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:03.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:03.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:03.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:03.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:03.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:03.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:03.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:03.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:03.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:03.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:03.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:03.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:03.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:03.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:03.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:03.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:03.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:03.051][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-04-12 16:02:03.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:03.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:03.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:03.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:03.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:03.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:03.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:03.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:03.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:03.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:03.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:03.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:03.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:03.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:03.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:03.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:03.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:03.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:03.076][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-04-12 16:02:03.077][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:03.078][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2025-04-12 16:02:03.079][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:03.080][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:03.081][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:03.082][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:03.083][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:03.084][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:03.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:03.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:03.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:03.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:03.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:03.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:03.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:03.095][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2025-04-12 16:02:03.097][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:03.098][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:03.099][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2025-04-12 16:02:03.451][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2025-04-12 16:02:03.795][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:03.797][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2025-04-12 16:02:03.800][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2025-04-12 16:02:03.802][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2025-04-12 16:02:03.804][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:03.805][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:03.806][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:03.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:03.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:03.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:03.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:03.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:03.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:03.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:03.817][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:03.818][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:03.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.819][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:03.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:03.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.837][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:03.838][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:03.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.840][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:03.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:03.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.843][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:03.844][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:03.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.847][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:03.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:03.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.850][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:03.851][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:03.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:03.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:03.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.857][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:03.857][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:03.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:03.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:03.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.863][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:03.864][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:03.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.866][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:03.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:03.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.869][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:03.870][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:03.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.872][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:03.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:03.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.876][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:03.877][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:03.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:03.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:03.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.882][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:03.883][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:03.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.886][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:03.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:03.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.889][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:03.890][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:03.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.892][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:03.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:03.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.895][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:03.896][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:03.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.899][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:03.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:03.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:03.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:03.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:03.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:03.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:03.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:03.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:03.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:03.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:03.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:03.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:03.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:03.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:03.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:03.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:03.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:03.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:03.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:03.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:03.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:03.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:03.938][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-04-12 16:02:03.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:03.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:03.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:03.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:03.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:03.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:03.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:03.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:03.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:03.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:03.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:03.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:03.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:03.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:03.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:03.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:03.957][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-04-12 16:02:03.958][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:03.959][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2025-04-12 16:02:03.960][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:03.961][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:03.962][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:03.963][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:03.963][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:03.964][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:03.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:03.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:03.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:03.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:03.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:03.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:03.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:03.975][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2025-04-12 16:02:03.978][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:03.978][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:03.980][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2025-04-12 16:02:10.511][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2025-04-12 16:02:10.853][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:10.855][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2025-04-12 16:02:10.857][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2025-04-12 16:02:10.859][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2025-04-12 16:02:10.860][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:10.861][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:10.862][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:10.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:10.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:10.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:10.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:10.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:10.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:10.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:10.880][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:10.880][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:10.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.882][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:10.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:10.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.886][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:10.887][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:10.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.888][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.889][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:10.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:10.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.892][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:10.893][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:10.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.894][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:10.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:10.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.899][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:10.899][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:10.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.901][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:10.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:10.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.905][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:10.906][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:10.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:10.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:10.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.911][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:10.911][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:10.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.913][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.914][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:10.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:10.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.917][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:10.917][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:10.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.919][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.920][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:10.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:10.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.923][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:10.924][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:10.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.925][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:10.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:10.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.929][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:10.930][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:10.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.932][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:10.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:10.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.935][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:10.936][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:10.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.937][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.938][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:10.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:10.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.941][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:10.942][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:10.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:10.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:10.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:10.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:10.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:10.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:10.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:10.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:10.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:10.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:10.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:10.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:10.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:10.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:10.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:10.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:10.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:10.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:10.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:10.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:10.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:10.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:10.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:10.981][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-04-12 16:02:10.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:10.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:10.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:10.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:10.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:10.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:10.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:10.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:10.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:10.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:10.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:10.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:10.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:10.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:10.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:10.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:10.999][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-04-12 16:02:10.999][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:11.001][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2025-04-12 16:02:11.002][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:11.002][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:11.003][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:11.004][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:11.005][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:11.005][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:11.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:11.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:11.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:11.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:11.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:11.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:11.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:11.016][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2025-04-12 16:02:11.018][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:11.019][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:11.020][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2025-04-12 16:02:11.357][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2025-04-12 16:02:11.696][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:11.698][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2025-04-12 16:02:11.701][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2025-04-12 16:02:11.703][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2025-04-12 16:02:11.704][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:11.705][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:11.705][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:11.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:11.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:11.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:11.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:11.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:11.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:11.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:11.716][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:11.717][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:11.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:11.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:11.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.723][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:11.723][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:11.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.725][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.726][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:11.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:11.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.729][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:11.730][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:11.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.732][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:11.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:11.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.735][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:11.736][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:11.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.737][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:11.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:11.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.741][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:11.742][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:11.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:11.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:11.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.747][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:11.748][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:11.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.750][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:11.751][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:11.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.754][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:11.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:11.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.757][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:11.757][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:11.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:11.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:11.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.763][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:11.764][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:11.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:11.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:11.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.776][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:11.777][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:11.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.779][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:11.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:11.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.782][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:11.783][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:11.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:11.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:11.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:11.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:11.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:11.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:11.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:11.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:11.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:11.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:11.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:11.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:11.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:11.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:11.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:11.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:11.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:11.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:11.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:11.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:11.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:11.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:11.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:11.816][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-04-12 16:02:11.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:11.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:11.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:11.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:11.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:11.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:11.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:11.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:11.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:11.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:11.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:11.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:11.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:11.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:11.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:11.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:11.834][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-04-12 16:02:11.835][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:11.836][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2025-04-12 16:02:11.837][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:11.838][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:11.839][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:11.839][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:11.840][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:11.841][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:11.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:11.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:11.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:11.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:11.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:11.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:11.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:11.856][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2025-04-12 16:02:11.858][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:11.858][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:11.859][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2025-04-12 16:02:12.213][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2025-04-12 16:02:12.552][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:12.553][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2025-04-12 16:02:12.556][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2025-04-12 16:02:12.558][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2025-04-12 16:02:12.560][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:12.561][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:12.562][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:12.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:12.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:12.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:12.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:12.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:12.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:12.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:12.573][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:12.574][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:12.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.575][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:12.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:12.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.580][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:12.581][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:12.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.583][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:12.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:12.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.587][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:12.588][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:12.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:12.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:12.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.594][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:12.594][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:12.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.596][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:12.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:12.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.600][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:12.601][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:12.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.602][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:12.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:12.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.607][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:12.607][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:12.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.610][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:12.611][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:12.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.612][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.613][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:12.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:12.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.617][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:12.617][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:12.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.626][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:12.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:12.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.630][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:12.631][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:12.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.633][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:12.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:12.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.636][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:12.637][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:12.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.639][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:12.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:12.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.642][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:12.643][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:12.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:12.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:12.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:12.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:12.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:12.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:12.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:12.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:12.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:12.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:12.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:12.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:12.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:12.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:12.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:12.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:12.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:12.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:12.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:12.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:12.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:12.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:12.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:12.678][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-04-12 16:02:12.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:12.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:12.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:12.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:12.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:12.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:12.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:12.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:12.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:12.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:12.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:12.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:12.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:12.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:12.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:12.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:12.697][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-04-12 16:02:12.702][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:12.703][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2025-04-12 16:02:12.705][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:12.705][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:12.706][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:12.707][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:12.708][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:12.709][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:12.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:12.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:12.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:12.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:12.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:12.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:12.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:12.719][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2025-04-12 16:02:12.721][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:12.722][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:12.723][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2025-04-12 16:02:13.062][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2025-04-12 16:02:13.400][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:13.402][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2025-04-12 16:02:13.405][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2025-04-12 16:02:13.407][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2025-04-12 16:02:13.408][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:13.409][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:13.410][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:13.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:13.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:13.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:13.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:13.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:13.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:13.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:13.421][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:13.421][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:13.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:13.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:13.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.427][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:13.427][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:13.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.430][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:13.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:13.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.433][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:13.433][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:13.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.436][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:13.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:13.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.439][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:13.440][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:13.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:13.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:13.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.445][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:13.446][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:13.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:13.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:13.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.451][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:13.459][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:13.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.461][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.462][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:13.463][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:13.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.464][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.465][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:13.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:13.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.468][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:13.469][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:13.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:13.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:13.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.474][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:13.475][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:13.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.478][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:13.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:13.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.481][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:13.481][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:13.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.484][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:13.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:13.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.487][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:13.487][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:13.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:13.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:13.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:13.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:13.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:13.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:13.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:13.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:13.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:13.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:13.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:13.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:13.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:13.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:13.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:13.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:13.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:13.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:13.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:13.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:13.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:13.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:13.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:13.523][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-04-12 16:02:13.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:13.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:13.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:13.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:13.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:13.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:13.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:13.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:13.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:13.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:13.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:13.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:13.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:13.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:13.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:13.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:13.545][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-04-12 16:02:13.546][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:13.547][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2025-04-12 16:02:13.548][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:13.549][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:13.550][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:13.550][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:13.551][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:13.552][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:13.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:13.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:13.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:13.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:13.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:13.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:13.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:13.563][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2025-04-12 16:02:13.565][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:13.566][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:13.567][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2025-04-12 16:02:13.909][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2025-04-12 16:02:14.246][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:14.248][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2025-04-12 16:02:14.250][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2025-04-12 16:02:14.253][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2025-04-12 16:02:14.254][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:14.255][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:14.256][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:14.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:14.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:14.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:14.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:14.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:14.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:14.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:14.267][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:14.268][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:14.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.269][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:14.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:14.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.274][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:14.274][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:14.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.276][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.277][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:14.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:14.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.280][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:14.281][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:14.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.283][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:14.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:14.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.287][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:14.288][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:14.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.296][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:14.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:14.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.300][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:14.301][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:14.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.303][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:14.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:14.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.307][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:14.307][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:14.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.309][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.310][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:14.311][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:14.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.313][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:14.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:14.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:14.317][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:14.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:14.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:14.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.323][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:14.324][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:14.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.325][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.326][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:14.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:14.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.330][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:14.330][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:14.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.332][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.332][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:14.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:14.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.335][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:14.336][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:14.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.338][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:14.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:14.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:14.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:14.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:14.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:14.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:14.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:14.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:14.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:14.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:14.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:14.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:14.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:14.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:14.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:14.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:14.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:14.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:14.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:14.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:14.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:14.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:14.376][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-04-12 16:02:14.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:14.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:14.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:14.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:14.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:14.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:14.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:14.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:14.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:14.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:14.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:14.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:14.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:14.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:14.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:14.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:14.395][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-04-12 16:02:14.396][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:14.397][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2025-04-12 16:02:14.398][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:14.399][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:14.400][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:14.400][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:14.401][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:14.402][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:14.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:14.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:14.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:14.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:14.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:14.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:14.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:14.413][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2025-04-12 16:02:14.415][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:14.415][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:14.416][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2025-04-12 16:02:14.753][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2025-04-12 16:02:15.098][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:15.100][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2025-04-12 16:02:15.103][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2025-04-12 16:02:15.105][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2025-04-12 16:02:15.107][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:15.108][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:15.108][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:15.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:15.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:15.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:15.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:15.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:15.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:15.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:15.120][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:15.121][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:15.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.122][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:15.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:15.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.126][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:15.127][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:15.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.128][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.136][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:15.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:15.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.140][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:15.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:15.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.143][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:15.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:15.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.145][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:15.146][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:15.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:15.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:15.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.152][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:15.153][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:15.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:15.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:15.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.158][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:15.159][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:15.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.161][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:15.162][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:15.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.164][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.165][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:15.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:15.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.168][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:15.169][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:15.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:15.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:15.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.174][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:15.175][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:15.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.177][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:15.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:15.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.180][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:15.181][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:15.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.183][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.184][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:15.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:15.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.187][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:15.187][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:15.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.189][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.190][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:15.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:15.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:15.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:15.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:15.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:15.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:15.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:15.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:15.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:15.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:15.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:15.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:15.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:15.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:15.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:15.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:15.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:15.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:15.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:15.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:15.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:15.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:15.229][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-04-12 16:02:15.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:15.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:15.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:15.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:15.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:15.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:15.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:15.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:15.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:15.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:15.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:15.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:15.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:15.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:15.248][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-04-12 16:02:15.249][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:15.250][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2025-04-12 16:02:15.251][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:15.252][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:15.253][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:15.254][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:15.254][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:15.255][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:15.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:15.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:15.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:15.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:15.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:15.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:15.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:15.266][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2025-04-12 16:02:15.268][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:15.269][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:15.270][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2025-04-12 16:02:15.606][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2025-04-12 16:02:15.944][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:15.946][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2025-04-12 16:02:15.949][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2025-04-12 16:02:15.951][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2025-04-12 16:02:15.952][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:15.953][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:15.954][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:15.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:15.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:15.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:15.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:15.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:15.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:15.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:15.973][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:15.973][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:15.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:15.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:15.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.979][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:15.980][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:15.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.982][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:15.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:15.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.985][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:15.986][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:15.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.988][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:15.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:15.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.992][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:15.993][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:15.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.994][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.995][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:15.996][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:15.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:15.998][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:15.999][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:16.000][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:16.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.001][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.002][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:16.003][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:16.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.004][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.005][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:16.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:16.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.008][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:16.009][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:16.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.011][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:16.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:16.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.015][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:16.016][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:16.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.017][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.018][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:16.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:16.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.022][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:16.022][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:16.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.025][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:16.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:16.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.028][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:16.029][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:16.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.031][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:16.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:16.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:16.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:16.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:16.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:16.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:16.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:16.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:16.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:16.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:16.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:16.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:16.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:16.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:16.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:16.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:16.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:16.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:16.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:16.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:16.068][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-04-12 16:02:16.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:16.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:16.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:16.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:16.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:16.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:16.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:16.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:16.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:16.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:16.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:16.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:16.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:16.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:16.086][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-04-12 16:02:16.087][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:16.088][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2025-04-12 16:02:16.089][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:16.090][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:16.091][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:16.092][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:16.092][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:16.093][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:16.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:16.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:16.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:16.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:16.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:16.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:16.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:16.104][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2025-04-12 16:02:16.106][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:16.107][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:16.108][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2025-04-12 16:02:16.444][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2025-04-12 16:02:16.780][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:16.781][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2025-04-12 16:02:16.784][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2025-04-12 16:02:16.786][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2025-04-12 16:02:16.787][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:16.788][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:16.789][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:16.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:16.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:16.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:16.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:16.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:16.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:16.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:16.808][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:16.808][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:16.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:16.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:16.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.814][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:16.815][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:16.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.817][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:16.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:16.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.820][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:16.820][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:16.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.822][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:16.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:16.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.826][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:16.827][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:16.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:16.830][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:16.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.832][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:16.833][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:16.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.835][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:16.836][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:16.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.838][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.839][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:16.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:16.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.842][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:16.842][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:16.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.844][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:16.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:16.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.848][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:16.849][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:16.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:16.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:16.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.854][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:16.855][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:16.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.857][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:16.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:16.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.860][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:16.861][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:16.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:16.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:16.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:16.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:16.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:16.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:16.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:16.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:16.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:16.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:16.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:16.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:16.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:16.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:16.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:16.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:16.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:16.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:16.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:16.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:16.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:16.899][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-04-12 16:02:16.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:16.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:16.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:16.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:16.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:16.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:16.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:16.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:16.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:16.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:16.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:16.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:16.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:16.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:16.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:16.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:16.918][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-04-12 16:02:16.919][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:16.920][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2025-04-12 16:02:16.921][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:16.922][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:16.923][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:16.924][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:16.924][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:16.925][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:16.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:16.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:16.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:16.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:16.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:16.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:16.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:16.936][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2025-04-12 16:02:16.938][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:16.939][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:16.940][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2025-04-12 16:02:17.288][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2025-04-12 16:02:17.654][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:17.655][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2025-04-12 16:02:17.658][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2025-04-12 16:02:17.660][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2025-04-12 16:02:17.661][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:17.667][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:17.670][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:17.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:17.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:17.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:17.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:17.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:17.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:17.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:17.681][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:17.681][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:17.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:17.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:17.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.687][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:17.687][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:17.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.689][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.690][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:17.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:17.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.693][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:17.693][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:17.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.695][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:17.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:17.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.699][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:17.699][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:17.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:17.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:17.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.705][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:17.705][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:17.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:17.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:17.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.711][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:17.711][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:17.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.714][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:17.715][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:17.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.716][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.717][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:17.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:17.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.720][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:17.721][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:17.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.722][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:17.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:17.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.726][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:17.726][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:17.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.728][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:17.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:17.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.732][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:17.733][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:17.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.734][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.735][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:17.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:17.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.738][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:17.743][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:17.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.745][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.746][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:17.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:17.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:17.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:17.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:17.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:17.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:17.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:17.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:17.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:17.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:17.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:17.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:17.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:17.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:17.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:17.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:17.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:17.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:17.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:17.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:17.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:17.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:17.778][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-04-12 16:02:17.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:17.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:17.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:17.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:17.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:17.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:17.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:17.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:17.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:17.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:17.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:17.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:17.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:17.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:17.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:17.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:17.797][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-04-12 16:02:17.798][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:17.799][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2025-04-12 16:02:17.800][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:17.801][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:17.802][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:17.803][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:17.803][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:17.804][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:17.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:17.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:17.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:17.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:17.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:17.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:17.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:17.940][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2025-04-12 16:02:17.942][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:17.943][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:17.944][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2025-04-12 16:02:18.291][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2025-04-12 16:02:18.629][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:18.630][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2025-04-12 16:02:18.633][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2025-04-12 16:02:18.635][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2025-04-12 16:02:18.636][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:18.637][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:18.638][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:18.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:18.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:18.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:18.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:18.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:18.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:18.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:18.648][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:18.649][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:18.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.650][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:18.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:18.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.654][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:18.654][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:18.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.656][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.657][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:18.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:18.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.660][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:18.661][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:18.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:18.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:18.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.666][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:18.666][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:18.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:18.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:18.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.672][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:18.673][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:18.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.674][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:18.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:18.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.678][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:18.679][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:18.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.680][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.681][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:18.682][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:18.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.684][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:18.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:18.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.687][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:18.688][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:18.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.689][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:18.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:18.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.693][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:18.694][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:18.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.695][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.696][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:18.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:18.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.699][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:18.700][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:18.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.702][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:18.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:18.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.705][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:18.705][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:18.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.708][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:18.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:18.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:18.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:18.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:18.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:18.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:18.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:18.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:18.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:18.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:18.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:18.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:18.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:18.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:18.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:18.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:18.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:18.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:18.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:18.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:18.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:18.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:18.743][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-04-12 16:02:18.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:18.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:18.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:18.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:18.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:18.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:18.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:18.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:18.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:18.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:18.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:18.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:18.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:18.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:18.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:18.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:18.763][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-04-12 16:02:18.764][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:18.765][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2025-04-12 16:02:18.766][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:18.767][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:18.768][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:18.769][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:18.770][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:18.770][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:18.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:18.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:18.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:18.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:18.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:18.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:18.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:18.781][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2025-04-12 16:02:18.784][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:18.784][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:18.786][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2025-04-12 16:02:19.145][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2025-04-12 16:02:19.487][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:19.489][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2025-04-12 16:02:19.492][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2025-04-12 16:02:19.494][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2025-04-12 16:02:19.495][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:19.496][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:19.497][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:19.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:19.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:19.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:19.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:19.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:19.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:19.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:19.508][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:19.509][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:19.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:19.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:19.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.515][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:19.516][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:19.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.517][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.518][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:19.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:19.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.521][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:19.522][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:19.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.523][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.524][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:19.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:19.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.528][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:19.528][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:19.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:19.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:19.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.534][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:19.535][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:19.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:19.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:19.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.540][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:19.541][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:19.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.543][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.544][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:19.545][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:19.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.546][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.547][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:19.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:19.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.550][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:19.551][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:19.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.552][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:19.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:19.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.557][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:19.558][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:19.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:19.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:19.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.563][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:19.564][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:19.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.566][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.567][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:19.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:19.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.570][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:19.571][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:19.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:19.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:19.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:19.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:19.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:19.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:19.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:19.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:19.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:19.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:19.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:19.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:19.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:19.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:19.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:19.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:19.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:19.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:19.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:19.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:19.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:19.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:19.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:19.616][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-04-12 16:02:19.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:19.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:19.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:19.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:19.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:19.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:19.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:19.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:19.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:19.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:19.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:19.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:19.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:19.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:19.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:19.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:19.633][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-04-12 16:02:19.634][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:19.635][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2025-04-12 16:02:19.636][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:19.636][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:19.637][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:19.638][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:19.639][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:19.639][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:19.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:19.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:19.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:19.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:19.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:19.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:19.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:19.649][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.DEBUG[2025-04-12 16:02:19.651][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:19.652][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:19.653][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.TRACE[2025-04-12 16:02:19.998][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803).
biodb.DEBUG[2025-04-12 16:02:20.357][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:20.359][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.content"
biodb.TRACE[2025-04-12 16:02:20.361][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.request"
biodb.TRACE[2025-04-12 16:02:20.363][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml"
biodb.DEBUG[2025-04-12 16:02:20.364][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:20.365][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:20.366][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:20.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:20.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:20.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:20.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:20.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:20.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:20.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:20.376][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:20.377][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:20.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:20.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:20.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.382][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:20.383][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:20.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.385][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:20.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:20.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.388][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:20.389][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:20.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.390][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.391][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:20.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:20.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.394][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:20.395][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:20.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.396][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:20.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:20.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.400][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:20.401][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:20.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:20.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:20.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.406][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:20.407][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:20.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.408][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.409][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:20.410][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:20.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.411][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.412][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:20.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:20.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.415][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:20.415][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:20.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.417][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:20.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:20.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.421][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:20.421][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:20.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.424][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:20.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:20.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.427][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:20.427][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:20.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.430][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:20.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:20.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.432][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:20.433][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:20.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:20.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:20.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:20.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:20.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:20.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:20.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:20.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:20.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:20.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:20.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:20.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:20.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:20.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:20.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:20.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:20.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:20.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:20.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:20.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:20.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:20.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:20.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:20.467][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-04-12 16:02:20.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:20.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:20.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:20.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:20.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:20.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:20.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:20.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:20.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:20.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:20.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:20.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:20.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:20.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:20.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:20.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:20.485][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-04-12 16:02:20.486][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:20.487][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2025-04-12 16:02:20.488][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:20.489][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:20.489][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:20.490][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:20.491][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:20.492][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:20.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:20.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:20.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:20.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:20.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:20.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:20.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:20.502][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.DEBUG[2025-04-12 16:02:20.504][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:20.505][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:20.506][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.TRACE[2025-04-12 16:02:20.849][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962).
biodb.DEBUG[2025-04-12 16:02:21.189][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:21.191][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.content"
biodb.TRACE[2025-04-12 16:02:21.194][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.request"
biodb.TRACE[2025-04-12 16:02:21.196][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml"
biodb.DEBUG[2025-04-12 16:02:21.198][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:21.199][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:21.200][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:21.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:21.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:21.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:21.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:21.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:21.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:21.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:21.212][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:21.213][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:21.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.214][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:21.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:21.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.219][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:21.220][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:21.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.221][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.222][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:21.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:21.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.225][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:21.226][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:21.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.228][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:21.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:21.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.232][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:21.233][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:21.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.234][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:21.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:21.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.239][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:21.239][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:21.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:21.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:21.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.245][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:21.245][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:21.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.247][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.248][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:21.249][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:21.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.250][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.251][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:21.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:21.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.254][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:21.255][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:21.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.257][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:21.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:21.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.261][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:21.262][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:21.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:21.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:21.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.276][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:21.277][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:21.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.279][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:21.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:21.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.282][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:21.283][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:21.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.285][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:21.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:21.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:21.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:21.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:21.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:21.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:21.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:21.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:21.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:21.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:21.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:21.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:21.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:21.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:21.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:21.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:21.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:21.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:21.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:21.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:21.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:21.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:21.318][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-04-12 16:02:21.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:21.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:21.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:21.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:21.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:21.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:21.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:21.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:21.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:21.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:21.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:21.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:21.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:21.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:21.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:21.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:21.336][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-04-12 16:02:21.337][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:21.338][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2025-04-12 16:02:21.339][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:21.340][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:21.341][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:21.342][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:21.342][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:21.343][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:21.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:21.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:21.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:21.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:21.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:21.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:21.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:21.353][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.DEBUG[2025-04-12 16:02:21.355][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:21.356][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:21.357][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.TRACE[2025-04-12 16:02:21.721][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655).
biodb.DEBUG[2025-04-12 16:02:22.057][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:22.059][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.content"
biodb.TRACE[2025-04-12 16:02:22.062][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.request"
biodb.TRACE[2025-04-12 16:02:22.064][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml"
biodb.DEBUG[2025-04-12 16:02:22.065][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:22.066][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:22.067][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:22.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:22.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:22.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:22.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:22.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:22.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:22.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:22.078][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:22.079][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:22.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:22.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:22.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.084][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:22.085][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:22.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.088][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:22.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:22.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.090][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:22.091][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:22.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.094][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:22.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:22.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.097][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:22.097][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:22.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.099][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:22.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:22.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.102][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:22.103][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:22.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:22.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:22.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.109][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:22.109][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:22.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.111][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:22.112][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:22.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.114][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:22.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:22.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.117][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:22.118][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:22.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:22.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:22.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.124][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:22.124][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:22.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:22.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:22.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.130][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:22.130][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:22.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.133][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:22.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:22.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.136][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:22.137][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:22.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:22.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:22.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:22.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:22.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:22.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:22.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:22.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:22.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:22.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:22.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:22.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:22.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:22.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:22.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:22.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:22.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:22.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:22.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:22.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:22.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:22.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:22.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:22.171][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-04-12 16:02:22.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:22.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:22.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:22.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:22.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:22.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:22.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:22.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:22.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:22.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:22.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:22.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:22.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:22.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:22.189][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-04-12 16:02:22.190][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:22.191][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2025-04-12 16:02:22.192][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:22.193][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:22.194][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:22.195][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:22.195][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:22.196][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:22.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:22.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:22.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:22.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:22.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:22.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:22.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:22.207][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.DEBUG[2025-04-12 16:02:22.209][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:22.209][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:22.210][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.TRACE[2025-04-12 16:02:22.554][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045).
biodb.DEBUG[2025-04-12 16:02:22.887][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:22.888][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.content"
biodb.TRACE[2025-04-12 16:02:22.891][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.request"
biodb.TRACE[2025-04-12 16:02:22.893][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml"
biodb.DEBUG[2025-04-12 16:02:22.894][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:22.895][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:22.896][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:22.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:22.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:22.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:22.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:22.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:22.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:22.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:22.906][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:22.907][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:22.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.908][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:22.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:22.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.912][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:22.913][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:22.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.915][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:22.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:22.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.927][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:22.928][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:22.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.929][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.930][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:22.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:22.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.933][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:22.933][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:22.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.935][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:22.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:22.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.939][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:22.940][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:22.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.941][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:22.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:22.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.945][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:22.945][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:22.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.947][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.948][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:22.948][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:22.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.951][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:22.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:22.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.953][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:22.954][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:22.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.955][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:22.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:22.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.959][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:22.960][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:22.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.961][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:22.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:22.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.965][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:22.966][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:22.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.967][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.968][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:22.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:22.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.971][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:22.972][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:22.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:22.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:22.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:22.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:22.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:22.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:22.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:22.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:22.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:22.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:22.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:22.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:22.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:22.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:22.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:22.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:22.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:22.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:22.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:22.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:22.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:23.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:23.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:23.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:23.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.005][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-04-12 16:02:23.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.031][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:23.033][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:02:23.034][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-12 16:02:23.035][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:02:23.036][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-12 16:02:23.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:23.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:23.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:23.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:23.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:23.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:23.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:23.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:23.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:23.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:23.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:23.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:23.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:23.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:23.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:23.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:23.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:23.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:23.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:23.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:23.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:23.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:23.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:23.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:23.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:23.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:23.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:23.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:23.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:23.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:23.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:23.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:23.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:23.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:23.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:23.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:23.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:23.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:23.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:23.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:23.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:23.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:23.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:23.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:23.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:23.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:23.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:23.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:23.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:23.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:23.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:23.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:23.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:23.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:23.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:23.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:23.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:23.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:23.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:23.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:23.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:23.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:23.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:23.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:23.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:23.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:23.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:23.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:23.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:23.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:23.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:23.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:23.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:23.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:23.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:23.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:23.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:23.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:23.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:23.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:23.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:23.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:23.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:23.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:23.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:23.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:23.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:23.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:23.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:23.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:23.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:23.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:23.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:23.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:23.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:23.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:23.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:23.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:23.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:23.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:23.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:23.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:23.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:23.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:23.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:23.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:23.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:23.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:23.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:23.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:23.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:23.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:23.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:23.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:23.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:23.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:23.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:23.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:23.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:23.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:23.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:23.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:23.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:23.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:23.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:23.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:23.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:23.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:23.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:23.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:23.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:23.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:23.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:23.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:23.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:23.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:23.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:23.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:23.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:23.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:23.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:23.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:23.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:23.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:23.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:23.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:23.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:23.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:23.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:23.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:23.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:23.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:23.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:23.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:23.448][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:23.451][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:23.452][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:23.453][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:02:23.788][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:02:24.122][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:24.124][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content"
biodb.TRACE[2025-04-12 16:02:24.127][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.request"
biodb.DEBUG[2025-04-12 16:02:24.129][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:24.132][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:24.132][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:24.134][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:02:24.472][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:02:24.809][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:24.811][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content"
biodb.TRACE[2025-04-12 16:02:24.814][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.request"
biodb.DEBUG[2025-04-12 16:02:24.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:24.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:24.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:24.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:24.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:24.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:24.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:24.825][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-04-12 16:02:24.826][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:24.827][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2025-04-12 16:02:24.828][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:24.829][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:24.829][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:24.830][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:24.831][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:24.832][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:24.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:24.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:24.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:24.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:24.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:24.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:24.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:24.841][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.DEBUG[2025-04-12 16:02:24.844][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:24.844][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:24.845][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.TRACE[2025-04-12 16:02:25.191][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648).
biodb.DEBUG[2025-04-12 16:02:25.538][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:25.539][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.content"
biodb.TRACE[2025-04-12 16:02:25.542][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.request"
biodb.TRACE[2025-04-12 16:02:25.544][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml"
biodb.DEBUG[2025-04-12 16:02:25.545][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:25.546][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:25.547][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:25.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:25.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:25.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:25.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:25.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:25.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:25.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:25.557][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:25.558][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:25.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:25.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:25.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.563][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:25.564][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:25.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.566][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.567][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:25.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:25.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.570][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:25.570][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:25.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.573][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:25.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:25.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.576][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:25.576][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:25.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.578][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:25.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:25.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.581][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:25.582][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:25.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:25.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:25.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.587][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:25.588][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:25.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.590][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:25.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:25.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.593][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:25.594][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:25.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.595][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.596][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:25.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:25.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.599][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:25.600][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:25.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.601][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:25.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:25.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.605][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:25.606][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:25.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.608][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:25.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:25.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.611][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:25.612][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:25.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.613][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.614][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:25.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:25.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.617][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:25.618][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:25.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.619][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.620][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:25.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:25.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:25.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:25.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:25.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:25.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:25.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:25.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:25.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:25.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:25.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:25.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:25.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:25.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:25.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:25.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:25.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:25.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:25.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:25.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:25.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:25.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:25.653][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-04-12 16:02:25.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:25.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:25.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:25.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:25.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:25.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:25.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:25.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:25.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:25.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:25.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:25.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:25.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:25.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:25.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:25.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:25.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:25.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:25.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:25.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:25.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:25.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:25.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:25.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:25.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:25.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:25.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:25.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:25.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:25.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:25.687][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-04-12 16:02:25.688][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:25.689][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2025-04-12 16:02:25.690][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:25.691][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:25.692][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:25.693][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:25.693][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:25.694][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:25.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:25.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:25.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:25.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:25.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:25.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:25.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:25.705][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.DEBUG[2025-04-12 16:02:25.707][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:25.707][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:25.708][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.TRACE[2025-04-12 16:02:26.052][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447).
biodb.DEBUG[2025-04-12 16:02:26.389][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:26.390][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.content"
biodb.TRACE[2025-04-12 16:02:26.393][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.request"
biodb.TRACE[2025-04-12 16:02:26.395][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml"
biodb.DEBUG[2025-04-12 16:02:26.396][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:26.397][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:26.398][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:26.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.408][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:26.409][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:26.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:26.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:26.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.414][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:26.415][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:26.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.417][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:26.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:26.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.420][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:26.421][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:26.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.422][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.423][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:26.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:26.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.426][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:26.426][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:26.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.428][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:26.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:26.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.431][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:26.432][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:26.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:26.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:26.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.437][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:26.438][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:26.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.439][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.440][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:26.441][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:26.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.443][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:26.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:26.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.456][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.457][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.458][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.462][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:26.463][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:26.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.464][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:26.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:26.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.468][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:26.468][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:26.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.471][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:26.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:26.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.474][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:26.474][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:26.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.477][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:26.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:26.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:26.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:26.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:26.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:26.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:26.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:26.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:26.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:26.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:26.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:26.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:26.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:26.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:26.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:26.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:26.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:26.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:26.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:26.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:26.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:26.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.508][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-04-12 16:02:26.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.533][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:26.535][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:02:26.537][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-12 16:02:26.537][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:02:26.539][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-12 16:02:26.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.923][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:26.925][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:02:26.926][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-12 16:02:26.927][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:02:26.928][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-12 16:02:26.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:26.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:26.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:26.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:26.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:26.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:26.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:26.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:26.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:26.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:26.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:26.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:27.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:27.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:27.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:27.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:27.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:27.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:27.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:27.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:27.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:27.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:27.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:27.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:27.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:27.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:27.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:27.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:27.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.310][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:02:27.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:02:27.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-12 16:02:27.320][biodb::testThat]
biodb.INFO [2025-04-12 16:02:27.321][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-04-12 16:02:27.321][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:02:27.322][biodb::testThat]
biodb.TRACE[2025-04-12 16:02:27.324][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:02:27.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:02:27.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.327][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:02:27.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:02:27.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.330][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:02:27.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:02:27.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:27.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:27.380][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:27.382][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:02:27.383][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-12 16:02:27.384][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:02:27.385][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-12 16:02:27.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:27.405][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:27.407][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:02:27.408][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-12 16:02:27.409][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:02:27.410][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-12 16:02:27.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:27.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:27.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:27.446][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:02:27.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.462][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:27.462][private$selectFields]
biodb.TRACE[2025-04-12 16:02:27.463][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:27.464][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:27.464][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:27.465][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.466][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.468][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.468][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.470][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:27.471][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:27.472][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.473][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.475][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:27.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.490][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-12 16:02:27.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.507][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:27.508][private$selectFields]
biodb.TRACE[2025-04-12 16:02:27.508][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:27.509][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:27.510][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:27.510][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.511][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.513][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.513][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.514][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.515][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.516][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:27.517][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:27.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.518][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.520][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.520][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:27.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.530][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:02:27.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:27.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.545][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:27.546][private$selectFields]
biodb.TRACE[2025-04-12 16:02:27.547][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:27.547][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:27.548][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:27.549][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.554][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.554][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:27.555][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:27.560][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.562][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.562][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:27.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:27.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:27.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:27.571][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-12 16:02:27.572][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:02:27.573][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:02:27.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:27.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:27.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:27.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:27.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:27.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:27.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:27.584][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:27.586][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:27.587][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:27.588][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:02:27.921][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:02:28.254][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:28.256][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content"
biodb.TRACE[2025-04-12 16:02:28.259][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.request"
biodb.DEBUG[2025-04-12 16:02:28.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:28.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:28.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:28.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:28.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:28.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:28.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:28.270][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2025-04-12 16:02:28.270][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:28.272][cch$loadFileContent] Trying to load 1 files from cache: [1]: "113227".
biodb.TRACE[2025-04-12 16:02:28.272][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:28.273][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:28.274][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:28.275][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:28.276][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:28.276][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:28.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:28.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:28.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:28.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:28.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:28.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:28.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:28.286][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.DEBUG[2025-04-12 16:02:28.288][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:28.289][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:28.290][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.TRACE[2025-04-12 16:02:28.623][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227).
biodb.DEBUG[2025-04-12 16:02:28.956][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:28.958][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.content"
biodb.TRACE[2025-04-12 16:02:28.961][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.request"
biodb.TRACE[2025-04-12 16:02:28.962][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml"
biodb.DEBUG[2025-04-12 16:02:28.964][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:28.964][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:28.965][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:28.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:28.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:28.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:28.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:28.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:28.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:28.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:28.976][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:28.977][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:28.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:28.978][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:28.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:28.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:28.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:28.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:28.982][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:28.983][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:28.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:28.984][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:28.985][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:28.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:28.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:28.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:28.988][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:28.989][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:28.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:28.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:28.991][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:28.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:28.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:28.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:28.994][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:28.994][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:28.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:28.996][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:28.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:28.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:28.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:28.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.000][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:29.000][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:29.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.002][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:29.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:29.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.005][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:29.006][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:29.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.007][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.008][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:29.009][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:29.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.010][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.011][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:29.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:29.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.014][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:29.015][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:29.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:29.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:29.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.020][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:29.021][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:29.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.022][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:29.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:29.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.026][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:29.027][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:29.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.029][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:29.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:29.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.032][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:29.033][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:29.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.034][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:29.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:29.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:29.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:29.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:29.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:29.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:29.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:29.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:29.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:29.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:29.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:29.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:29.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:29.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:29.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:29.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:29.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:29.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:29.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:29.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:29.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:29.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:29.067][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2025-04-12 16:02:29.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:29.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:29.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:29.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:29.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:29.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:29.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:29.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:29.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:29.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:29.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:29.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:29.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:29.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:29.086][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2025-04-12 16:02:29.087][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:29.088][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169712".
biodb.TRACE[2025-04-12 16:02:29.089][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:29.090][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:29.091][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:29.092][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:29.092][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:29.093][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:29.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:29.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:29.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:29.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:29.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:29.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:29.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:29.104][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.DEBUG[2025-04-12 16:02:29.106][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:29.107][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:29.108][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.TRACE[2025-04-12 16:02:29.444][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712).
biodb.DEBUG[2025-04-12 16:02:29.776][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:29.778][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.content"
biodb.TRACE[2025-04-12 16:02:29.780][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.request"
biodb.TRACE[2025-04-12 16:02:29.782][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml"
biodb.DEBUG[2025-04-12 16:02:29.783][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:29.784][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:29.785][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:29.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:29.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:29.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:29.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:29.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:29.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:29.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:29.796][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:29.797][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:29.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.798][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:29.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:29.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.802][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:29.803][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:29.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.806][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:29.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:29.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.809][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:29.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:29.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:29.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:29.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.816][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:29.816][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:29.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:29.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:29.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.822][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:29.833][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:29.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.835][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:29.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:29.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.839][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:29.840][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:29.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.841][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.842][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:29.843][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:29.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.844][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.845][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:29.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:29.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.848][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:29.849][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:29.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:29.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:29.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.854][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:29.855][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:29.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:29.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:29.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.860][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:29.861][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:29.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.862][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.863][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:29.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:29.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.866][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:29.867][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:29.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.868][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.869][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:29.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:29.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:29.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:29.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:29.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:29.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:29.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:29.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:29.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:29.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:29.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:29.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:29.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:29.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:29.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:29.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:29.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:29.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:29.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:29.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:29.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:29.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:29.901][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2025-04-12 16:02:29.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:29.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:29.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:29.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:29.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:29.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:29.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:29.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:29.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:29.911][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:29.913][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:29.914][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:29.916][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:02:30.253][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:02:30.585][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:30.587][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content"
biodb.TRACE[2025-04-12 16:02:30.590][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.request"
biodb.DEBUG[2025-04-12 16:02:30.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:30.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:30.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:30.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:30.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:30.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:30.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:30.600][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2025-04-12 16:02:30.601][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:30.602][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4781".
biodb.TRACE[2025-04-12 16:02:30.603][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:30.604][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:30.605][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:30.605][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:30.606][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:30.607][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:30.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:30.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:30.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:30.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:30.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:30.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:30.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:30.617][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.DEBUG[2025-04-12 16:02:30.619][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:30.620][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:30.621][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.TRACE[2025-04-12 16:02:30.955][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781).
biodb.DEBUG[2025-04-12 16:02:31.371][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:31.372][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.content"
biodb.TRACE[2025-04-12 16:02:31.375][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.request"
biodb.TRACE[2025-04-12 16:02:31.377][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml"
biodb.DEBUG[2025-04-12 16:02:31.378][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:31.379][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:31.380][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:31.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:31.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:31.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:31.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:31.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:31.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:31.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:31.391][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:31.392][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:31.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.393][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:31.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:31.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.398][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:31.398][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:31.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.401][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:31.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:31.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.404][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:31.404][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:31.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.407][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:31.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:31.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.410][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:31.410][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:31.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:31.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:31.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.415][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:31.416][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:31.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:31.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:31.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.422][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:31.422][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:31.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.425][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:31.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:31.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.428][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:31.428][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:31.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.431][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:31.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:31.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.433][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:31.434][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:31.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:31.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:31.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.439][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:31.440][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:31.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.443][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:31.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:31.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.446][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:31.447][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:31.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.448][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.449][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:31.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:31.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.452][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:31.453][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:31.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.455][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:31.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:31.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:31.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:31.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:31.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:31.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:31.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:31.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:31.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:31.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:31.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:31.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:31.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:31.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:31.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:31.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:31.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:31.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:31.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:31.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:31.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:31.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:31.489][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2025-04-12 16:02:31.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:31.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:31.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:31.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:31.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:31.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:31.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:31.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:31.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:31.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:31.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:31.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:31.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:31.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:31.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:31.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:31.508][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2025-04-12 16:02:31.509][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:31.510][cch$loadFileContent] Trying to load 1 files from cache: [1]: "16587".
biodb.TRACE[2025-04-12 16:02:31.511][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:31.512][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:31.512][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:31.513][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:31.523][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:31.524][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:31.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:31.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:31.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:31.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:31.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:31.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:31.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:31.534][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.DEBUG[2025-04-12 16:02:31.536][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:31.537][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:31.538][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.TRACE[2025-04-12 16:02:31.871][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587).
biodb.DEBUG[2025-04-12 16:02:32.210][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:32.212][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.content"
biodb.TRACE[2025-04-12 16:02:32.215][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.request"
biodb.TRACE[2025-04-12 16:02:32.217][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml"
biodb.DEBUG[2025-04-12 16:02:32.218][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:32.219][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:32.220][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:32.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:32.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:32.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:32.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:32.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:32.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:32.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:32.231][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:32.232][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:32.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.234][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:32.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:32.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.237][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:32.238][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:32.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.240][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.241][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:32.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:32.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.244][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:32.244][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:32.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.247][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:32.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:32.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.250][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:32.251][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:32.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.253][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:32.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:32.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.256][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:32.257][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:32.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:32.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:32.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.262][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:32.263][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:32.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.264][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.265][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:32.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:32.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.268][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:32.269][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:32.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.271][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.272][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:32.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:32.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.275][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:32.275][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:32.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.277][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:32.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:32.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.281][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:32.282][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:32.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:32.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:32.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.288][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:32.289][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:32.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.292][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:32.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:32.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.295][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:32.296][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:32.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.297][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:32.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:32.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:32.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:32.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:32.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:32.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:32.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:32.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:32.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:32.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:32.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:32.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:32.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:32.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:32.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:32.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:32.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:32.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:32.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:32.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:32.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:32.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:32.333][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2025-04-12 16:02:32.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:32.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:32.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:32.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:32.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:32.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:32.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:32.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:32.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:32.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:32.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:32.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:32.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:32.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:32.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:32.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:32.353][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2025-04-12 16:02:32.354][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:32.355][cch$loadFileContent] Trying to load 1 files from cache: [1]: "19804".
biodb.TRACE[2025-04-12 16:02:32.356][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:32.357][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:32.358][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:32.359][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:32.360][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:32.360][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:32.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:32.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:32.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:32.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:32.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:32.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:32.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:32.371][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.DEBUG[2025-04-12 16:02:32.373][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:32.374][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:32.375][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.TRACE[2025-04-12 16:02:32.708][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804).
biodb.DEBUG[2025-04-12 16:02:33.050][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:33.052][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.content"
biodb.TRACE[2025-04-12 16:02:33.055][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.request"
biodb.TRACE[2025-04-12 16:02:33.056][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml"
biodb.DEBUG[2025-04-12 16:02:33.058][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:33.059][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:33.059][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:33.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:33.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:33.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:33.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:33.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:33.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:33.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:33.071][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:33.072][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:33.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:33.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:33.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.077][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:33.078][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:33.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.080][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:33.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:33.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.083][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:33.084][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:33.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.086][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:33.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:33.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.089][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:33.090][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:33.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.092][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:33.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:33.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.096][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:33.096][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:33.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:33.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:33.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.102][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:33.103][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:33.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.105][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:33.106][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:33.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.107][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.108][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:33.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:33.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.111][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:33.112][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:33.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.113][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:33.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:33.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.118][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:33.118][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:33.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.120][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:33.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:33.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.124][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:33.125][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:33.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.127][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:33.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:33.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.130][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:33.131][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:33.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:33.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:33.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:33.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:33.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:33.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:33.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:33.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:33.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:33.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:33.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:33.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:33.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:33.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:33.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:33.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:33.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:33.172][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2025-04-12 16:02:33.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:33.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:33.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:33.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:33.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:33.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:33.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:33.196][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:02:33.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:33.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:33.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:33.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:33.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:33.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:33.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:33.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.226][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:33.227][private$selectFields]
biodb.TRACE[2025-04-12 16:02:33.228][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:33.228][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:33.229][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:33.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.231][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.232][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.235][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.235][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:33.236][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:33.237][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.238][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.239][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.240][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:33.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.249][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:02:33.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:33.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:33.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:33.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:33.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:33.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:33.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:33.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.264][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:33.265][private$selectFields]
biodb.TRACE[2025-04-12 16:02:33.266][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:33.266][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:33.267][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:33.268][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.270][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.271][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.273][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:33.274][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:33.275][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.276][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.277][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.278][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:33.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.287][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-12 16:02:33.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:33.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:33.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:33.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:33.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:33.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:33.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:33.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:33.303][private$selectFields]
biodb.TRACE[2025-04-12 16:02:33.303][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:33.304][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:33.305][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:33.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.306][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.309][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.311][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.311][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:33.312][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:33.313][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.313][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.315][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.315][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:33.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:33.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:33.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:33.325][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-12 16:02:33.326][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:02:33.327][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:02:33.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:33.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:33.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:33.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:33.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:33.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:33.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:33.338][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:33.340][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:33.341][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:33.342][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:02:33.674][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:02:34.006][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:34.008][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content"
biodb.TRACE[2025-04-12 16:02:34.011][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.request"
biodb.DEBUG[2025-04-12 16:02:34.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:34.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:34.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:34.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:34.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:34.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:34.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:34.022][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2025-04-12 16:02:34.023][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:34.024][cch$loadFileContent] Trying to load 1 files from cache: [1]: "159630".
biodb.TRACE[2025-04-12 16:02:34.025][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:34.026][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:34.027][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:34.027][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:34.028][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:34.029][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:34.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:34.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:34.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:34.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:34.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:34.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:34.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:34.040][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.DEBUG[2025-04-12 16:02:34.042][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:34.043][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:34.044][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.TRACE[2025-04-12 16:02:34.378][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630).
biodb.DEBUG[2025-04-12 16:02:34.730][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:34.732][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.content"
biodb.TRACE[2025-04-12 16:02:34.734][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.request"
biodb.TRACE[2025-04-12 16:02:34.737][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml"
biodb.DEBUG[2025-04-12 16:02:34.738][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:34.739][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:34.740][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:34.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:34.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:34.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:34.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:34.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:34.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:34.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:34.760][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:34.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:34.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:34.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:34.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.766][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:34.766][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:34.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.769][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:34.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:34.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.772][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:34.772][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:34.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:34.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:34.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.778][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:34.778][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:34.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:34.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:34.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.783][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:34.784][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:34.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:34.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:34.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.789][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:34.790][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:34.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.792][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:34.793][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:34.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.795][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:34.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:34.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.798][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:34.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:34.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:34.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:34.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.803][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:34.804][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:34.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.806][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:34.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:34.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.810][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:34.810][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:34.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.813][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:34.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:34.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.815][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:34.816][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:34.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.818][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:34.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:34.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:34.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:34.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:34.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:34.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:34.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:34.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:34.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:34.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:34.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:34.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:34.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:34.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:34.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:34.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:34.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:34.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:34.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:34.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:34.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:34.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:34.850][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2025-04-12 16:02:34.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:34.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:34.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:34.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:34.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:34.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:34.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:34.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:34.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:34.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:34.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:34.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:34.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:34.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:34.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:34.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:34.868][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2025-04-12 16:02:34.869][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:34.870][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160202".
biodb.TRACE[2025-04-12 16:02:34.871][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:34.872][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:34.872][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:34.873][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:34.874][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:34.875][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:34.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:34.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:34.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:34.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:34.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:34.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:34.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:34.885][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.DEBUG[2025-04-12 16:02:34.887][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:34.888][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:34.889][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.TRACE[2025-04-12 16:02:35.220][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202).
biodb.DEBUG[2025-04-12 16:02:35.552][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:35.554][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.content"
biodb.TRACE[2025-04-12 16:02:35.556][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.request"
biodb.TRACE[2025-04-12 16:02:35.558][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml"
biodb.DEBUG[2025-04-12 16:02:35.560][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:35.560][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:35.561][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:35.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:35.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:35.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:35.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:35.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:35.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:35.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:35.572][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:35.573][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:35.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:35.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:35.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.578][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:35.579][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:35.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.581][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:35.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:35.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.584][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:35.585][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:35.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.587][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:35.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:35.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.590][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:35.591][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:35.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.592][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:35.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:35.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.596][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:35.597][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:35.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:35.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:35.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.602][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:35.602][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:35.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.604][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.605][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:35.605][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:35.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.608][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:35.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:35.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.610][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:35.611][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:35.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.613][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:35.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:35.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.617][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:35.618][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:35.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.619][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:35.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:35.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.623][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:35.623][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:35.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.625][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.626][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:35.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:35.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.629][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:35.629][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:35.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:35.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:35.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:35.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:35.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:35.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:35.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:35.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:35.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:35.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:35.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:35.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:35.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:35.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:35.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:35.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:35.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:35.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:35.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:35.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:35.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:35.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:35.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:35.663][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2025-04-12 16:02:35.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:35.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:35.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:35.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:35.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:35.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:35.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:35.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:35.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:35.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:35.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:35.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:35.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:35.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:35.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:35.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:35.687][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2025-04-12 16:02:35.687][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:35.688][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160393".
biodb.TRACE[2025-04-12 16:02:35.689][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:35.690][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:35.691][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:35.692][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:35.692][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:35.693][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:35.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:35.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:35.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:35.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:35.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:35.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:35.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:35.703][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.DEBUG[2025-04-12 16:02:35.704][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:35.705][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:35.706][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.TRACE[2025-04-12 16:02:36.042][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393).
biodb.DEBUG[2025-04-12 16:02:36.378][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:36.380][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.content"
biodb.TRACE[2025-04-12 16:02:36.383][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.request"
biodb.TRACE[2025-04-12 16:02:36.385][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml"
biodb.DEBUG[2025-04-12 16:02:36.386][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:36.387][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:36.388][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:36.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:36.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:36.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:36.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:36.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:36.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:36.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:36.400][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:36.400][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:36.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:36.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:36.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.406][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:36.407][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:36.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.409][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.410][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:36.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:36.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.413][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:36.414][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:36.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.415][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.416][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:36.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:36.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.420][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:36.420][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:36.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.422][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:36.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:36.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.426][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:36.427][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:36.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.428][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:36.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:36.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.433][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:36.434][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:36.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.436][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:36.437][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:36.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.439][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:36.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:36.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.443][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:36.443][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:36.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:36.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:36.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.449][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:36.450][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:36.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.452][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:36.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:36.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.456][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:36.457][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:36.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.460][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:36.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:36.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.463][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:36.464][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:36.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.466][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:36.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:36.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:36.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:36.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:36.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:36.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:36.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:36.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:36.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:36.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:36.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:36.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:36.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:36.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:36.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:36.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:36.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:36.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:36.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:36.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:36.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:36.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:36.502][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2025-04-12 16:02:36.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:36.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:36.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:36.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:36.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:36.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:36.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:36.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:36.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:36.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:36.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:36.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:36.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:36.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:36.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:36.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:36.522][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2025-04-12 16:02:36.523][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:36.524][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160991".
biodb.TRACE[2025-04-12 16:02:36.525][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:36.526][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:36.526][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:36.527][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:36.528][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:36.529][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:36.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:36.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:36.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:36.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:36.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:36.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:36.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:36.540][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.DEBUG[2025-04-12 16:02:36.542][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:36.543][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:36.544][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.TRACE[2025-04-12 16:02:36.876][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991).
biodb.DEBUG[2025-04-12 16:02:37.213][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:37.215][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.content"
biodb.TRACE[2025-04-12 16:02:37.218][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.request"
biodb.TRACE[2025-04-12 16:02:37.220][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml"
biodb.DEBUG[2025-04-12 16:02:37.221][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:37.222][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:37.223][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:37.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:37.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:37.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:37.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:37.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:37.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:37.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:37.235][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:37.236][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:37.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:37.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:37.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.242][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:37.243][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:37.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.244][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.245][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:37.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:37.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.248][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:37.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:37.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:37.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:37.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.255][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:37.255][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:37.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.257][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:37.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:37.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.261][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:37.262][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:37.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:37.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:37.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.268][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:37.268][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:37.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.270][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.271][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:37.272][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:37.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.274][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:37.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:37.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.278][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:37.279][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:37.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.280][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:37.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:37.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.284][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:37.285][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:37.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.287][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:37.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:37.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.291][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:37.292][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:37.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.294][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.295][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:37.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:37.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.298][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:37.299][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:37.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.305][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.311][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:37.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:37.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:37.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:37.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:37.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:37.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:37.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:37.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:37.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:37.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:37.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:37.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:37.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:37.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:37.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:37.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:37.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:37.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:37.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:37.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:37.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:37.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:37.345][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2025-04-12 16:02:37.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:37.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:37.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:37.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:37.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:37.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:37.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:37.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:37.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:37.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:37.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:37.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:37.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:37.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:37.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:37.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:37.365][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2025-04-12 16:02:37.365][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:37.367][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164975".
biodb.TRACE[2025-04-12 16:02:37.367][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:37.368][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:37.369][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:37.370][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:37.371][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:37.372][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:37.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:37.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:37.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:37.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:37.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:37.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:37.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:37.383][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.DEBUG[2025-04-12 16:02:37.385][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:37.386][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:37.387][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.TRACE[2025-04-12 16:02:37.718][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975).
biodb.DEBUG[2025-04-12 16:02:38.051][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:38.053][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.content"
biodb.TRACE[2025-04-12 16:02:38.056][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.request"
biodb.TRACE[2025-04-12 16:02:38.058][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml"
biodb.DEBUG[2025-04-12 16:02:38.059][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:38.060][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:38.061][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:38.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:38.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:38.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:38.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:38.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:38.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:38.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:38.072][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:38.073][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:38.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.075][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:38.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:38.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.079][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:38.080][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:38.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.082][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:38.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:38.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.085][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:38.086][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:38.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.088][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.089][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:38.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:38.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.092][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:38.093][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:38.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.094][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:38.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:38.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.098][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:38.099][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:38.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:38.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:38.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.105][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:38.105][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:38.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.107][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.108][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:38.109][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:38.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.111][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:38.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:38.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.114][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:38.115][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:38.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:38.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:38.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.120][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:38.121][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:38.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.122][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:38.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:38.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.126][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:38.127][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:38.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.128][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.129][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:38.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:38.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.132][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:38.133][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:38.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.134][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.135][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:38.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:38.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:38.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:38.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:38.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:38.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:38.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:38.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:38.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:38.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:38.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:38.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:38.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:38.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:38.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:38.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:38.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:38.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:38.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:38.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:38.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:38.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:38.168][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2025-04-12 16:02:38.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:38.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:38.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:38.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:38.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:38.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:38.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:38.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:38.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:38.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:38.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:38.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:38.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:38.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:38.187][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2025-04-12 16:02:38.188][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:38.189][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164994".
biodb.TRACE[2025-04-12 16:02:38.190][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:38.191][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:38.191][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:38.192][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:38.193][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:38.194][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:38.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:38.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:38.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:38.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:38.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:38.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:38.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:38.204][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.DEBUG[2025-04-12 16:02:38.206][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:38.207][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:38.208][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.TRACE[2025-04-12 16:02:38.542][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994).
biodb.DEBUG[2025-04-12 16:02:38.875][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:38.877][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.content"
biodb.TRACE[2025-04-12 16:02:38.880][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.request"
biodb.TRACE[2025-04-12 16:02:38.882][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml"
biodb.DEBUG[2025-04-12 16:02:38.883][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:38.884][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:38.885][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:38.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:38.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:38.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:38.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:38.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:38.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:38.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:38.896][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:38.897][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:38.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:38.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:38.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.903][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:38.903][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:38.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.905][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.906][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:38.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:38.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.909][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:38.910][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:38.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.912][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.913][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:38.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:38.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.926][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:38.926][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:38.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:38.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:38.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.931][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:38.932][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:38.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.934][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:38.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:38.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.938][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:38.939][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:38.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.940][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.941][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:38.942][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:38.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.944][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:38.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:38.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.948][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:38.949][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:38.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:38.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:38.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.955][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:38.956][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:38.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.957][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:38.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:38.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.962][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:38.963][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:38.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.964][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.965][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:38.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:38.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.969][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:38.969][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:38.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.971][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.972][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:38.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:38.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:38.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:38.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:38.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:38.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:38.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:38.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:38.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:38.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:38.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:38.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:38.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:38.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:38.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:38.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:38.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:38.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:38.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:38.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:39.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:39.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:39.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:39.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:39.006][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2025-04-12 16:02:39.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:39.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:39.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:39.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:39.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:39.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:39.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:39.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:39.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:39.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:39.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:39.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:39.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:39.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:39.024][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2025-04-12 16:02:39.025][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:39.026][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169251".
biodb.TRACE[2025-04-12 16:02:39.027][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:39.028][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:39.029][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:39.030][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:39.031][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:39.031][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:39.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:39.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:39.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:39.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:39.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:39.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:39.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:39.043][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.DEBUG[2025-04-12 16:02:39.045][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:39.046][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:39.047][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.TRACE[2025-04-12 16:02:39.381][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251).
biodb.DEBUG[2025-04-12 16:02:39.715][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:39.717][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.content"
biodb.TRACE[2025-04-12 16:02:39.720][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.request"
biodb.TRACE[2025-04-12 16:02:39.721][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml"
biodb.DEBUG[2025-04-12 16:02:39.723][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:39.724][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:39.724][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:39.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:39.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:39.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:39.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:39.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:39.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:39.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:39.735][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:39.736][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:39.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.737][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:39.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:39.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.741][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:39.742][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:39.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.744][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:39.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:39.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.747][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:39.748][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:39.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.751][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:39.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:39.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.754][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:39.755][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:39.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.756][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:39.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:39.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.760][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:39.760][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:39.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:39.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:39.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.766][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:39.767][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:39.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.769][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:39.770][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:39.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.772][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:39.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:39.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.775][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:39.775][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:39.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:39.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:39.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.781][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:39.781][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:39.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:39.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:39.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.787][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:39.787][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:39.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.790][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:39.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:39.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.792][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:39.793][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:39.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.795][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:39.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:39.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:39.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:39.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:39.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:39.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:39.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:39.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:39.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:39.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:39.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:39.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:39.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:39.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:39.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:39.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:39.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:39.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:39.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:39.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:39.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:39.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:39.828][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2025-04-12 16:02:39.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:39.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:39.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:39.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:39.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:39.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:39.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:39.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:39.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:39.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:39.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:39.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:39.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:39.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:39.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:39.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:39.847][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2025-04-12 16:02:39.848][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:39.849][cch$loadFileContent] Trying to load 1 files from cache: [1]: "224261".
biodb.TRACE[2025-04-12 16:02:39.850][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:39.851][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:39.852][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:39.852][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:39.853][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:39.854][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:39.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:39.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:39.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:39.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:39.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:39.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:39.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:39.872][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.DEBUG[2025-04-12 16:02:39.874][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:39.875][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:39.876][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.TRACE[2025-04-12 16:02:40.208][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261).
biodb.DEBUG[2025-04-12 16:02:40.544][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:40.546][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.content"
biodb.TRACE[2025-04-12 16:02:40.548][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.request"
biodb.TRACE[2025-04-12 16:02:40.551][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml"
biodb.DEBUG[2025-04-12 16:02:40.552][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:40.553][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:40.554][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:40.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:40.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:40.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:40.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:40.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:40.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:40.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:40.564][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:40.565][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:40.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.566][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:40.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:40.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.570][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:40.571][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:40.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.573][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:40.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:40.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.576][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:40.577][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:40.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:40.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:40.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.583][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:40.584][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:40.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.585][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:40.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:40.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.589][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:40.590][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:40.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.591][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:40.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:40.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.595][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:40.596][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:40.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.598][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:40.599][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:40.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.600][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.601][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:40.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:40.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.604][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:40.605][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:40.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.606][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:40.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:40.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.610][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:40.611][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:40.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.612][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:40.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:40.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.616][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:40.617][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:40.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.619][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:40.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:40.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.622][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:40.623][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:40.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.625][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.625][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:40.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:40.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:40.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:40.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:40.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:40.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:40.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:40.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:40.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:40.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:40.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:40.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:40.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:40.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:40.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:40.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:40.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:40.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:40.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:40.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:40.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:40.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:40.658][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2025-04-12 16:02:40.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:40.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:40.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:40.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:40.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:40.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:40.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:40.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:40.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:40.668][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:40.671][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:40.671][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:40.673][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:02:41.005][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:02:41.337][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:41.338][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content"
biodb.TRACE[2025-04-12 16:02:41.341][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.request"
biodb.DEBUG[2025-04-12 16:02:41.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:41.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:41.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:41.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:41.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:41.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:41.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:41.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:41.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:41.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:41.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:41.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:41.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:41.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:41.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:41.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:41.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:41.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:41.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:41.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:41.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:41.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:41.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:41.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:41.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:41.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:41.370][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2025-04-12 16:02:41.371][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:41.372][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71954".
biodb.TRACE[2025-04-12 16:02:41.373][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:41.374][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:41.375][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:41.375][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:41.376][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:41.377][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:41.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:41.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:41.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:41.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:41.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:41.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:41.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:41.388][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.DEBUG[2025-04-12 16:02:41.389][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:41.390][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:41.391][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.TRACE[2025-04-12 16:02:41.726][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954).
biodb.DEBUG[2025-04-12 16:02:42.069][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:42.071][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.content"
biodb.TRACE[2025-04-12 16:02:42.073][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.request"
biodb.TRACE[2025-04-12 16:02:42.075][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml"
biodb.DEBUG[2025-04-12 16:02:42.076][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:42.077][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:42.078][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:42.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:42.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:42.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:42.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:42.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:42.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:42.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:42.089][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:42.090][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:42.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.092][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:42.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:42.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.096][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:42.097][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:42.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.099][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:42.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:42.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.102][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:42.103][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:42.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.105][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:42.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:42.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.108][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:42.109][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:42.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:42.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:42.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.114][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:42.115][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:42.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:42.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:42.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.120][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:42.121][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:42.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.122][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.123][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:42.124][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:42.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.126][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:42.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:42.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.129][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:42.130][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:42.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:42.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:42.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.136][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:42.136][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:42.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:42.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:42.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.153][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:42.153][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:42.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.155][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.156][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:42.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:42.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.158][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:42.159][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:42.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.161][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:42.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:42.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:42.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:42.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:42.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:42.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:42.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:42.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:42.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:42.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:42.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:42.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:42.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:42.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:42.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:42.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:42.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:42.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:42.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:42.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:42.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:42.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:42.192][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2025-04-12 16:02:42.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:42.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:42.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:42.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:42.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:42.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:42.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:42.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:42.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:42.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:42.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:42.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:42.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:42.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:42.209][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2025-04-12 16:02:42.210][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:42.211][cch$loadFileContent] Trying to load 1 files from cache: [1]: "197612".
biodb.TRACE[2025-04-12 16:02:42.213][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:42.213][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:42.214][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:42.215][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:42.216][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:42.216][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:42.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:42.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:42.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:42.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:42.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:42.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:42.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:42.226][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.DEBUG[2025-04-12 16:02:42.228][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:42.229][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:42.230][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.TRACE[2025-04-12 16:02:42.579][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612).
biodb.DEBUG[2025-04-12 16:02:42.917][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:42.919][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.content"
biodb.TRACE[2025-04-12 16:02:42.922][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.request"
biodb.TRACE[2025-04-12 16:02:42.924][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml"
biodb.DEBUG[2025-04-12 16:02:42.925][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:42.926][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:42.927][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:42.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:42.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:42.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:42.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:42.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:42.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:42.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:42.938][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:42.938][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:42.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.940][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:42.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:42.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.944][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:42.944][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:42.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.947][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:42.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:42.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.950][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:42.950][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:42.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.952][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.953][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:42.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:42.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.956][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:42.957][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:42.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.958][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:42.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:42.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.962][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:42.963][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:42.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.964][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:42.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:42.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.968][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:42.969][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:42.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.970][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.971][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:42.972][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:42.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.974][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:42.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:42.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.977][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:42.978][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:42.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.980][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:42.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:42.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.984][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:42.984][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:42.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.986][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:42.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:42.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.990][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:42.991][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:42.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.992][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.993][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:42.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:42.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.996][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:42.997][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:42.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:42.998][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:42.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:43.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:43.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:43.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:43.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:43.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:43.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:43.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:43.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:43.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:43.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:43.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:43.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:43.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:43.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:43.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:43.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:43.032][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2025-04-12 16:02:43.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:43.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:43.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:43.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:43.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:43.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:43.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:43.042][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:02:43.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:43.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:43.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:43.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:43.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:43.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:43.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:43.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.057][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:43.058][private$selectFields]
biodb.TRACE[2025-04-12 16:02:43.059][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:43.060][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:43.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:43.061][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.062][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.063][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.064][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.065][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.067][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:43.068][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:43.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.069][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.071][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:43.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.081][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:02:43.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:43.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:43.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:43.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:43.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:43.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:43.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:43.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.104][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:43.104][private$selectFields]
biodb.TRACE[2025-04-12 16:02:43.105][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:43.106][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:43.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:43.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.108][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.110][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.111][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.113][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.113][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:43.114][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:43.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.116][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.117][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.118][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:43.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.127][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-12 16:02:43.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:43.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:43.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:43.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:43.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:43.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:43.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:43.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.143][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:43.144][private$selectFields]
biodb.TRACE[2025-04-12 16:02:43.144][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:43.145][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:43.146][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:43.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.149][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.150][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.151][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.153][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:43.153][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:43.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.155][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.156][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.157][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:43.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:43.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.167][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-12 16:02:43.168][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:02:43.169][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-12 16:02:43.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:43.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:43.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:43.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:43.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:43.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:43.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:43.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:43.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:43.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:43.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:43.261][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:43.263][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:43.264][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:43.266][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:02:43.602][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:02:43.938][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:43.940][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content"
biodb.TRACE[2025-04-12 16:02:43.943][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.request"
biodb.DEBUG[2025-04-12 16:02:43.946][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:43.948][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:43.949][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:43.950][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:02:44.289][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:02:44.623][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:44.625][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content"
biodb.TRACE[2025-04-12 16:02:44.628][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.request"
biodb.DEBUG[2025-04-12 16:02:44.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:44.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:44.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:44.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:44.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:44.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:44.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:44.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:44.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:44.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:44.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:44.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:44.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:44.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:44.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:44.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:44.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:44.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:44.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:44.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:44.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:44.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:44.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:44.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:44.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:44.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:44.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:44.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:44.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:44.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:44.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:44.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:44.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:44.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:44.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:44.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:44.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:44.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:44.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:44.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:44.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:44.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:44.683][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:02:44.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:44.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:44.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:44.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:44.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:44.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:44.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:44.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.699][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:44.709][private$selectFields]
biodb.TRACE[2025-04-12 16:02:44.715][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:44.715][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:44.716][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:44.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.718][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.720][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.720][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.721][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.723][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.723][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:44.724][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:44.725][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.725][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.728][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:44.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.738][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-12 16:02:44.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:44.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:44.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:44.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:44.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:44.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:44.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:44.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.774][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:44.775][private$selectFields]
biodb.TRACE[2025-04-12 16:02:44.776][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:44.777][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:44.777][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:44.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.783][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:44.791][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:44.791][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.792][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.793][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.794][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:44.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.804][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:02:44.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:44.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:44.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:44.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:44.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:44.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:44.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:44.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.820][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:44.820][private$selectFields]
biodb.TRACE[2025-04-12 16:02:44.821][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:44.822][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:44.822][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:44.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.825][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.826][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.827][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.829][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:44.830][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:44.830][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.831][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.833][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.833][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:44.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:44.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:44.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:44.843][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-12 16:02:44.844][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:02:44.845][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:02:44.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:44.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:44.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:44.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:44.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:44.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:44.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:44.856][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:44.859][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:44.859][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:44.861][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:02:45.194][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:02:45.530][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:45.532][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content"
biodb.TRACE[2025-04-12 16:02:45.535][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.request"
biodb.DEBUG[2025-04-12 16:02:45.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:45.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:45.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:45.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:45.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:45.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:45.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:45.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:45.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:45.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:45.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:45.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:45.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:45.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:45.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:45.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:45.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:45.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:45.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:45.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:45.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:45.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:45.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:45.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:45.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:45.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:45.565][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2025-04-12 16:02:45.566][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:45.567][cch$loadFileContent] Trying to load 1 files from cache: [1]: "91601".
biodb.TRACE[2025-04-12 16:02:45.568][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:45.569][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:45.569][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:45.570][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:45.571][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:45.572][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:45.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:45.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:45.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:45.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:45.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:45.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:45.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:45.583][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.DEBUG[2025-04-12 16:02:45.585][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:45.585][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:45.586][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.TRACE[2025-04-12 16:02:45.922][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601).
biodb.DEBUG[2025-04-12 16:02:46.256][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:46.257][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.content"
biodb.TRACE[2025-04-12 16:02:46.260][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.request"
biodb.TRACE[2025-04-12 16:02:46.262][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml"
biodb.DEBUG[2025-04-12 16:02:46.263][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:46.264][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:46.265][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:46.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:46.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:46.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:46.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:46.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:46.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:46.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:46.276][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:46.276][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:46.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:46.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:46.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.282][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:46.283][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:46.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.285][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:46.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:46.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.288][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:46.289][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:46.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.290][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:46.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:46.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.294][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:46.295][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:46.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.296][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:46.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:46.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.300][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:46.301][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:46.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:46.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:46.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.316][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:46.317][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:46.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.318][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.319][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:46.320][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:46.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.321][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.322][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:46.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:46.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.325][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:46.326][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:46.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.327][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:46.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:46.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.331][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:46.331][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:46.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.333][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:46.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:46.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.337][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:46.337][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:46.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.339][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.340][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:46.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:46.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.342][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:46.343][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:46.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.344][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.345][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:46.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:46.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:46.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:46.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:46.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:46.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:46.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:46.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:46.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:46.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:46.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:46.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:46.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:46.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:46.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:46.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:46.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:46.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:46.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:46.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:46.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:46.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:46.377][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2025-04-12 16:02:46.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:46.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:46.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:46.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:46.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:46.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:46.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:46.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:46.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:46.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:46.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:46.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:46.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:46.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:46.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:46.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:46.395][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2025-04-12 16:02:46.396][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:46.397][cch$loadFileContent] Trying to load 1 files from cache: [1]: "95147".
biodb.TRACE[2025-04-12 16:02:46.398][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:46.399][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:46.400][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:46.401][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:46.401][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:46.402][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:46.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:46.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:46.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:46.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:46.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:46.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:46.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:46.413][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.DEBUG[2025-04-12 16:02:46.415][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:46.416][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:46.417][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.TRACE[2025-04-12 16:02:46.786][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147).
biodb.DEBUG[2025-04-12 16:02:47.125][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:47.127][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.content"
biodb.TRACE[2025-04-12 16:02:47.130][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.request"
biodb.TRACE[2025-04-12 16:02:47.132][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml"
biodb.DEBUG[2025-04-12 16:02:47.133][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:47.134][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:47.135][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:47.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:47.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:47.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:47.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:47.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:47.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:47.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:47.146][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:47.146][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:47.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:47.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:47.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.152][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:47.152][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:47.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.155][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:47.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:47.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.158][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:47.159][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:47.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.161][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:47.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:47.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.164][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:47.165][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:47.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:47.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:47.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.171][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:47.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:47.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.173][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:47.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:47.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.177][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:47.178][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:47.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.179][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.180][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:47.181][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:47.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.182][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.183][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:47.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:47.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.186][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:47.187][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:47.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:47.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:47.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.192][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:47.193][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:47.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:47.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:47.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.198][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:47.199][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:47.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.201][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:47.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:47.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.204][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:47.205][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:47.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.208][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:47.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:47.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:47.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:47.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:47.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:47.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:47.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:47.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:47.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:47.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:47.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:47.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:47.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:47.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:47.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:47.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:47.241][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2025-04-12 16:02:47.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:47.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:47.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:47.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:47.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:47.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:47.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:47.251][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:02:47.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:47.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:47.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:47.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:47.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:47.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:47.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:47.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.267][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:47.268][private$selectFields]
biodb.TRACE[2025-04-12 16:02:47.268][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:47.269][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:47.270][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:47.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.271][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.274][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.276][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.277][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:47.278][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:47.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.281][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:47.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.298][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:02:47.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:47.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:47.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:47.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:47.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:47.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:47.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:47.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.314][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:47.314][private$selectFields]
biodb.TRACE[2025-04-12 16:02:47.315][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:47.316][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:47.316][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:47.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.318][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.321][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.323][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:47.324][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:47.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.325][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.327][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:47.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.336][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-12 16:02:47.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:47.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:47.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:47.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:47.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:47.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:47.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:47.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.352][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:47.352][private$selectFields]
biodb.TRACE[2025-04-12 16:02:47.353][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:47.354][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:47.355][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:47.355][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.358][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.359][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.361][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.361][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:47.362][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:47.363][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.363][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.365][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.366][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:47.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:47.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:47.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:47.376][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-12 16:02:47.376][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:02:47.377][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:02:47.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:47.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:47.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:47.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:47.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:47.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:47.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:47.389][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:47.391][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:47.392][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:47.394][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:02:47.727][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:02:48.061][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:48.062][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content"
biodb.TRACE[2025-04-12 16:02:48.065][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.request"
biodb.DEBUG[2025-04-12 16:02:48.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:48.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:48.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:48.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:48.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:48.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:48.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:48.077][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2025-04-12 16:02:48.078][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:48.079][cch$loadFileContent] Trying to load 1 files from cache: [1]: "636".
biodb.TRACE[2025-04-12 16:02:48.079][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:48.080][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:48.081][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:48.082][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:48.083][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:48.084][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:48.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:48.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:48.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:48.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:48.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:48.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:48.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:48.094][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.DEBUG[2025-04-12 16:02:48.096][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:48.097][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:48.098][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.TRACE[2025-04-12 16:02:48.431][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636).
biodb.DEBUG[2025-04-12 16:02:48.774][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:48.776][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.content"
biodb.TRACE[2025-04-12 16:02:48.780][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.request"
biodb.TRACE[2025-04-12 16:02:48.782][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml"
biodb.DEBUG[2025-04-12 16:02:48.783][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:48.784][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:48.785][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:48.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:48.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:48.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:48.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:48.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:48.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:48.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:48.796][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:48.797][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:48.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.798][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:48.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:48.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.802][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:48.803][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:48.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.806][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:48.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:48.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.809][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:48.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:48.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:48.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:48.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.815][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:48.816][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:48.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:48.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:48.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.821][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:48.822][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:48.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:48.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:48.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.827][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:48.828][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:48.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.830][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:48.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:48.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.833][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:48.834][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:48.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.835][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.836][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:48.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:48.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.839][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:48.840][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:48.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.842][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:48.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:48.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.845][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:48.846][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:48.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.848][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.849][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:48.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:48.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.852][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:48.852][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:48.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.854][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.855][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:48.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:48.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.858][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:48.858][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:48.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.860][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:48.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:48.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:48.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:48.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:48.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:48.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:48.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:48.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:48.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:48.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:48.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:48.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:48.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:48.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:48.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:48.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:48.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:48.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:48.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:48.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:48.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:48.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:48.894][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2025-04-12 16:02:48.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:48.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:48.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:48.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:48.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:48.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:48.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:48.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:48.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:48.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:48.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:48.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:48.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:48.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:48.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:48.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:48.922][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2025-04-12 16:02:48.922][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:48.924][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64199".
biodb.TRACE[2025-04-12 16:02:48.925][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:48.925][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:48.926][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:48.927][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:48.928][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:48.928][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:48.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:48.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:48.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:48.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:48.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:48.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:48.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:48.938][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.DEBUG[2025-04-12 16:02:48.940][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:48.941][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:48.942][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.TRACE[2025-04-12 16:02:49.278][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199).
biodb.DEBUG[2025-04-12 16:02:49.655][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:49.657][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.content"
biodb.TRACE[2025-04-12 16:02:49.660][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.request"
biodb.TRACE[2025-04-12 16:02:49.662][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml"
biodb.DEBUG[2025-04-12 16:02:49.663][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:49.664][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:49.665][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:49.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:49.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:49.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:49.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:49.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:49.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:49.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:49.676][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:49.677][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:49.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:49.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:49.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.682][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:49.683][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:49.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.684][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.685][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:49.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:49.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.688][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:49.688][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:49.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.690][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:49.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:49.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.693][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:49.694][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:49.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.695][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:49.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:49.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.699][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:49.700][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:49.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:49.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:49.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.705][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:49.706][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:49.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.708][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:49.709][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:49.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.711][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.712][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:49.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:49.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.715][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:49.715][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:49.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.717][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:49.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:49.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.721][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:49.721][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:49.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.723][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:49.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:49.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.727][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:49.727][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:49.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.729][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.730][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:49.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:49.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.732][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:49.733][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:49.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.735][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:49.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:49.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:49.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:49.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:49.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:49.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:49.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:49.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:49.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:49.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:49.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:49.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:49.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:49.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:49.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:49.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:49.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:49.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:49.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:49.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:49.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:49.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:49.767][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2025-04-12 16:02:49.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:49.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:49.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:49.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:49.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:49.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:49.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:49.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:49.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:49.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:49.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:49.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:49.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:49.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:49.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:49.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:49.786][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2025-04-12 16:02:49.786][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:49.788][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65648".
biodb.TRACE[2025-04-12 16:02:49.789][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:49.789][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:49.790][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:49.791][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:49.792][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:49.792][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:49.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:49.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:49.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:49.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:49.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:49.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:49.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:49.803][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.DEBUG[2025-04-12 16:02:49.805][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:49.806][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:49.807][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.TRACE[2025-04-12 16:02:50.148][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648).
biodb.DEBUG[2025-04-12 16:02:50.486][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:50.487][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.content"
biodb.TRACE[2025-04-12 16:02:50.490][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.request"
biodb.TRACE[2025-04-12 16:02:50.492][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml"
biodb.DEBUG[2025-04-12 16:02:50.493][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:50.494][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:50.495][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:50.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:50.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:50.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:50.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:50.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:50.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:50.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:50.505][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:50.506][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:50.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:50.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:50.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.511][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:50.512][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:50.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.514][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:50.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:50.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.517][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:50.518][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:50.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.520][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.520][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:50.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:50.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.523][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:50.524][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:50.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:50.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:50.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.529][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:50.530][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:50.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:50.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:50.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.535][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:50.536][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:50.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.538][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.538][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:50.539][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.541][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.541][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:50.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.544][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:50.545][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:50.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:50.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:50.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.550][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:50.551][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:50.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.552][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.554][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:50.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:50.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.556][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:50.557][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:50.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.559][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:50.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:50.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.562][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:50.563][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:50.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.575][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:50.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:50.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:50.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:50.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:50.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:50.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:50.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:50.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:50.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:50.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:50.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:50.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:50.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:50.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:50.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:50.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:50.607][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2025-04-12 16:02:50.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:50.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:50.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:50.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:50.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:50.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:50.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:50.616][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:02:50.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:50.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:50.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:50.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:50.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:50.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:50.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:50.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.631][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.632][private$selectFields]
biodb.TRACE[2025-04-12 16:02:50.633][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:50.634][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:50.634][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.635][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.636][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.637][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.638][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.639][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.641][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.641][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.645][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:50.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.654][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-12 16:02:50.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:50.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:50.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:50.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:50.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:50.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:50.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:50.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.670][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.670][private$selectFields]
biodb.TRACE[2025-04-12 16:02:50.671][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:50.672][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:50.672][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.673][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.674][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.677][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.679][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.680][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.680][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.681][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.683][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:50.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.692][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-12 16:02:50.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:50.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:50.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:50.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:50.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:50.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:50.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:50.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.708][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.708][private$selectFields]
biodb.TRACE[2025-04-12 16:02:50.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:50.710][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:50.710][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.711][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.712][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.714][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.715][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.716][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.717][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.718][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.719][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.719][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.721][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.721][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:50.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.731][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-04-12 16:02:50.732][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:02:50.732][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-12 16:02:50.740][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:02:50.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:02:50.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.743][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:02:50.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:02:50.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.746][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:02:50.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:02:50.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-12 16:02:50.752][biodb::testThat]
biodb.INFO [2025-04-12 16:02:50.753][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-04-12 16:02:50.753][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:02:50.754][biodb::testThat]
biodb.TRACE[2025-04-12 16:02:50.756][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:02:50.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:02:50.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.759][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:02:50.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:02:50.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.762][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:02:50.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:02:50.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:50.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:50.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:50.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:50.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:50.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:50.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:50.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:50.811][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:50.813][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:02:50.814][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-12 16:02:50.815][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:02:50.816][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-12 16:02:50.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:50.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:50.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:50.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:50.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:50.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:50.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:50.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:50.841][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:50.843][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:02:50.844][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-12 16:02:50.845][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:02:50.846][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-12 16:02:50.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:50.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:50.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:50.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:50.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:50.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:50.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:50.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:50.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:50.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:50.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:50.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:50.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:50.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:50.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:50.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:50.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:50.881][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:02:50.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:50.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:50.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:50.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:50.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:50.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:50.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:50.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.896][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.897][private$selectFields]
biodb.TRACE[2025-04-12 16:02:50.898][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:50.898][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:50.899][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.900][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.903][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.903][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.905][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.905][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.906][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.907][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.908][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.910][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:50.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.919][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-12 16:02:50.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:50.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:50.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:50.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:50.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:50.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:50.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:50.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.935][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.935][private$selectFields]
biodb.TRACE[2025-04-12 16:02:50.936][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:50.937][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:50.937][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.940][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.944][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.945][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.945][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.946][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.947][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.948][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:50.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.958][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:02:50.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:50.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:50.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:50.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:50.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:50.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:50.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:50.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.973][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.974][private$selectFields]
biodb.TRACE[2025-04-12 16:02:50.974][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:50.975][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:50.976][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.977][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.979][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.982][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.983][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:50.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.986][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.986][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:50.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:50.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:50.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:50.996][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-12 16:02:50.997][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:02:50.997][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:02:50.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:50.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:51.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:51.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:51.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:51.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:51.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:51.009][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:51.011][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:02:51.012][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-12 16:02:51.013][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:02:51.014][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-12 16:02:51.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:51.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:51.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:51.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:51.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:51.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:51.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:51.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:51.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:51.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:51.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:51.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:51.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:51.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:51.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:51.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:51.050][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:51.052][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:02:51.053][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-12 16:02:51.054][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:02:51.055][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-12 16:02:51.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:51.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:51.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:51.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:51.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:51.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:51.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:51.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:51.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:51.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:51.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:51.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:51.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:51.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:51.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:51.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:51.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:51.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:51.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:51.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:51.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:51.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:51.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:51.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:51.115][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:02:51.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:51.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:51.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:51.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:51.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:51.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:51.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:51.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.130][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:51.130][private$selectFields]
biodb.TRACE[2025-04-12 16:02:51.131][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:51.132][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:51.132][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:51.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.135][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.136][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.136][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:51.139][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:51.140][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.140][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.142][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:51.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.151][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:02:51.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:51.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:51.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:51.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:51.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:51.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:51.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:51.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.166][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:51.167][private$selectFields]
biodb.TRACE[2025-04-12 16:02:51.168][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:51.168][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:51.169][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:51.170][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.172][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.173][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.175][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.175][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:51.176][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:51.177][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.177][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.179][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.179][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:51.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.189][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-12 16:02:51.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:51.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:51.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:51.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:51.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:51.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:51.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:51.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.204][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:51.205][private$selectFields]
biodb.TRACE[2025-04-12 16:02:51.205][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:51.206][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:51.207][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:51.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.212][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.213][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:51.214][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:51.214][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.215][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.217][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.217][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:51.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:51.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.227][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-12 16:02:51.228][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:02:51.228][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:02:51.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:51.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:51.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:51.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:51.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:51.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:51.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:51.239][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:51.242][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:02:51.243][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-12 16:02:51.244][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:02:51.245][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-12 16:02:51.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:51.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:51.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:51.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:51.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:51.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:51.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:51.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:51.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:51.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:51.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:51.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:51.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:51.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:51.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:51.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:51.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:51.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:51.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:51.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:51.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:51.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:51.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:51.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:51.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:51.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:51.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:51.298][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:51.301][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:51.301][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:51.303][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:02:51.639][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:02:52.141][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:52.143][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content"
biodb.TRACE[2025-04-12 16:02:52.146][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.request"
biodb.DEBUG[2025-04-12 16:02:52.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:52.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:52.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:52.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:52.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:52.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:52.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:52.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:52.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:52.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:52.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:52.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:52.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:52.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:52.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:52.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:52.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:52.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:52.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:52.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:52.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:52.177][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2025-04-12 16:02:52.178][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:52.180][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3017".
biodb.TRACE[2025-04-12 16:02:52.181][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:52.182][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:52.182][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:52.183][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:52.184][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:52.185][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:52.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:52.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:52.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:52.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:52.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:52.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:52.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:52.196][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.DEBUG[2025-04-12 16:02:52.198][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:52.199][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:52.200][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.TRACE[2025-04-12 16:02:52.533][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017).
biodb.DEBUG[2025-04-12 16:02:52.881][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:52.883][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.content"
biodb.TRACE[2025-04-12 16:02:52.886][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.request"
biodb.TRACE[2025-04-12 16:02:52.888][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml"
biodb.DEBUG[2025-04-12 16:02:52.890][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:52.891][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:52.892][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:52.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:52.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:52.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:52.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:52.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:52.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:52.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:52.914][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:52.915][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:52.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.917][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:52.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:52.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.921][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:52.922][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:52.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.923][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.924][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:52.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:52.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.927][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:52.928][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:52.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.930][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.931][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:52.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:52.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.934][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:52.935][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:52.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.936][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:52.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:52.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.941][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:52.941][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:52.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:52.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:52.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.947][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:52.948][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:52.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.951][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:52.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:52.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.954][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:52.955][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:52.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.956][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.957][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:52.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:52.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.960][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:52.961][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:52.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.963][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:52.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:52.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.967][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:52.968][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:52.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.969][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:52.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:52.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.973][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:52.974][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:52.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.976][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.977][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:52.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:52.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.980][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:52.981][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:52.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.982][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.983][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:52.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:52.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:52.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:52.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:52.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:52.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:52.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:52.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:52.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:52.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:52.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:52.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:53.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:53.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:53.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:53.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:53.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:53.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:53.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:53.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:53.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:53.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:53.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:53.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:53.019][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2025-04-12 16:02:53.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:53.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:53.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:53.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:53.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:53.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:53.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:53.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:53.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:53.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:53.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:53.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:53.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:53.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:53.039][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2025-04-12 16:02:53.040][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:53.041][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3510".
biodb.TRACE[2025-04-12 16:02:53.042][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:53.043][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:53.044][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:53.045][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:53.046][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:53.047][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:53.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:53.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:53.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:53.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:53.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:53.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:53.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:53.058][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.DEBUG[2025-04-12 16:02:53.060][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:53.061][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:53.062][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.TRACE[2025-04-12 16:02:53.407][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510).
biodb.DEBUG[2025-04-12 16:02:53.749][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:53.751][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.content"
biodb.TRACE[2025-04-12 16:02:53.754][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.request"
biodb.TRACE[2025-04-12 16:02:53.756][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml"
biodb.DEBUG[2025-04-12 16:02:53.757][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:53.758][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:53.759][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:53.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:53.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:53.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:53.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:53.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:53.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:53.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:53.769][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:53.770][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:53.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:53.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:53.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.776][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:53.777][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:53.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.779][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:53.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:53.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.782][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:53.783][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:53.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:53.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:53.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.789][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:53.789][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:53.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:53.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:53.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.795][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:53.795][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:53.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:53.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:53.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.801][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:53.801][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:53.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.803][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.804][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:53.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:53.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.807][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:53.807][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:53.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.810][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:53.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:53.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.813][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:53.814][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:53.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.815][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:53.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:53.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.819][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:53.820][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:53.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.823][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:53.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:53.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.825][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:53.827][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:53.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.829][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:53.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:53.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.832][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:53.833][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:53.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:53.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:53.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:53.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:53.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:53.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:53.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:53.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:53.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:53.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:53.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:53.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:53.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:53.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:53.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:53.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:53.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:53.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:53.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:53.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:53.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:53.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:53.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:53.876][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2025-04-12 16:02:53.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:53.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:53.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:53.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:53.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:53.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:53.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:53.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:53.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:53.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:53.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:53.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:53.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:53.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:53.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:53.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:53.895][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2025-04-12 16:02:53.895][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:53.897][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7554".
biodb.TRACE[2025-04-12 16:02:53.898][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:53.898][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:53.899][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:53.900][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:53.901][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:53.902][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:53.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:53.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:53.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:53.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:53.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:53.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:53.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:53.913][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.DEBUG[2025-04-12 16:02:53.914][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:53.915][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:53.916][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.TRACE[2025-04-12 16:02:54.247][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554).
biodb.DEBUG[2025-04-12 16:02:54.587][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:54.589][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.content"
biodb.TRACE[2025-04-12 16:02:54.592][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.request"
biodb.TRACE[2025-04-12 16:02:54.594][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml"
biodb.DEBUG[2025-04-12 16:02:54.595][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:54.596][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:54.597][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:54.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:54.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:54.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:54.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:54.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:54.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:54.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:54.608][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:54.608][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:54.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:54.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:54.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.614][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:54.615][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:54.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.617][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:54.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:54.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.620][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:54.621][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:54.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.623][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.624][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:54.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:54.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.627][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:54.628][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:54.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.629][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:54.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:54.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.633][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:54.634][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:54.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.635][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:54.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:54.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.640][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:54.640][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:54.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.642][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.643][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:54.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:54.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.646][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:54.647][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:54.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.650][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:54.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:54.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.653][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.654][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.660][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:54.661][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:54.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:54.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:54.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.666][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:54.667][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:54.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.669][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:54.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:54.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.673][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:54.673][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:54.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:54.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:54.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:54.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:54.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:54.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:54.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:54.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:54.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:54.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:54.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:54.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:54.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:54.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:54.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:54.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:54.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:54.710][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2025-04-12 16:02:54.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:54.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:54.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:54.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:54.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:54.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:54.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:54.720][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:02:54.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:54.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:54.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:54.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:54.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:54.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:54.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:54.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.737][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:54.738][private$selectFields]
biodb.TRACE[2025-04-12 16:02:54.739][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:54.739][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:54.740][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:54.741][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.742][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.747][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:54.748][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:54.749][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.749][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.751][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.752][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:54.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.762][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:02:54.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:54.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:54.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:54.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:54.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:54.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:54.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:54.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.777][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:54.778][private$selectFields]
biodb.TRACE[2025-04-12 16:02:54.779][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:54.780][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:54.780][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:54.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.785][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.787][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:54.788][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:54.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.791][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:54.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.802][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2025-04-12 16:02:54.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:54.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:54.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:54.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:54.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:54.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:54.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:54.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.825][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:54.826][private$selectFields]
biodb.TRACE[2025-04-12 16:02:54.827][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:54.828][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:54.828][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:54.829][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.830][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.832][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.833][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.835][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:54.835][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:54.836][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.837][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.838][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.839][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:54.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.849][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2025-04-12 16:02:54.850][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:02:54.851][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-12 16:02:54.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:54.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:54.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:54.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:54.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:54.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:54.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:54.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:54.905][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:54.908][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:02:54.909][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-12 16:02:54.910][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:02:54.911][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-12 16:02:54.913][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:54.915][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:02:54.916][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-12 16:02:54.917][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:02:54.918][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-12 16:02:54.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:54.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:54.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:54.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:54.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:54.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:54.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:54.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:54.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:54.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:54.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:54.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:54.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:54.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:54.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:54.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:54.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:54.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:54.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:54.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:54.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:54.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:54.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:54.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:54.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:54.973][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:02:54.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:54.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:54.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:54.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:54.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:54.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:54.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:54.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.990][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:54.990][private$selectFields]
biodb.TRACE[2025-04-12 16:02:54.991][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:54.992][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:54.992][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:54.993][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.995][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.996][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:54.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:54.998][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:54.999][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:54.999][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:55.000][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.001][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.002][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.003][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:55.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.013][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-12 16:02:55.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:55.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:55.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:55.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:55.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:55.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:55.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:55.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:55.029][private$selectFields]
biodb.TRACE[2025-04-12 16:02:55.030][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:55.030][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:55.031][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:55.032][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.033][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.034][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.035][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.038][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:55.039][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:55.040][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.040][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.042][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.042][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:55.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.053][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:02:55.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:55.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:55.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:55.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:55.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:55.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:55.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:55.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.068][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:55.069][private$selectFields]
biodb.TRACE[2025-04-12 16:02:55.069][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:55.070][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:55.071][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:55.072][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.072][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.074][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.077][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.078][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:55.078][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:55.079][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.080][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.082][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:55.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:55.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.091][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-12 16:02:55.092][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:02:55.098][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:02:55.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:55.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:55.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:55.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:55.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:55.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:55.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:55.110][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:55.112][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:55.113][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:55.114][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:02:55.448][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:02:55.794][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:55.796][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.content"
biodb.TRACE[2025-04-12 16:02:55.799][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.request"
biodb.DEBUG[2025-04-12 16:02:55.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:55.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:55.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:55.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:55.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:55.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:55.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:55.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:55.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:55.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:55.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:55.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:55.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:55.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:55.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:55.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:55.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:55.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:55.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:55.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:55.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:55.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:55.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:55.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:55.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:55.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:55.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:55.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:55.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:55.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:55.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:55.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:55.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:55.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:55.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:55.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:55.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:55.845][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2025-04-12 16:02:55.846][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:55.847][cch$loadFileContent] Trying to load 1 files from cache: [1]: "27495".
biodb.TRACE[2025-04-12 16:02:55.848][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:55.849][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:55.849][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:55.850][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:55.851][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:55.851][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:55.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:55.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:55.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:55.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:55.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:55.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:55.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:55.862][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.DEBUG[2025-04-12 16:02:55.864][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:55.865][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:55.866][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.TRACE[2025-04-12 16:02:56.210][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495).
biodb.DEBUG[2025-04-12 16:02:56.552][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:56.554][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.content"
biodb.TRACE[2025-04-12 16:02:56.557][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.request"
biodb.TRACE[2025-04-12 16:02:56.559][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml"
biodb.DEBUG[2025-04-12 16:02:56.560][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:56.561][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:56.562][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:56.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:56.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:56.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:56.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:56.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:56.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:56.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:56.574][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:56.574][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:56.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.576][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:56.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:56.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.580][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:56.581][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:56.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.583][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:56.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:56.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.586][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:56.587][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:56.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:56.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:56.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.593][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:56.594][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:56.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.596][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:56.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:56.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.600][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:56.600][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:56.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.602][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:56.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:56.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.606][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:56.607][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:56.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.609][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:56.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:56.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.613][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:56.613][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:56.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.615][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.616][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:56.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:56.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.619][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.620][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.621][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.625][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:56.626][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:56.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.628][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:56.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:56.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.632][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:56.633][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:56.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.634][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.635][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:56.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:56.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.638][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:56.639][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:56.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.641][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:56.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:56.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:56.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:56.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:56.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:56.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:56.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:56.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:56.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:56.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:56.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:56.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:56.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:56.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:56.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:56.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:56.674][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2025-04-12 16:02:56.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:56.684][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:02:56.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:56.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:56.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:56.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:56.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:56.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:56.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:56.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.700][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:56.701][private$selectFields]
biodb.TRACE[2025-04-12 16:02:56.702][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:56.702][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:56.703][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:56.704][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.704][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.707][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.707][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.709][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.709][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:56.710][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:56.711][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.712][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.714][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:56.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.724][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-12 16:02:56.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:56.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:56.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:56.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:56.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:56.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:56.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:56.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.748][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:56.749][private$selectFields]
biodb.TRACE[2025-04-12 16:02:56.750][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:56.750][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:56.751][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:56.752][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.754][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.755][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.755][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.757][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.758][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:56.758][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:56.759][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.760][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.761][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.762][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:56.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.771][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-12 16:02:56.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:56.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:56.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:56.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:56.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:56.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:56.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:56.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.787][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:56.787][private$selectFields]
biodb.TRACE[2025-04-12 16:02:56.788][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:02:56.789][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:02:56.790][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:56.791][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.791][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.793][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.793][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.794][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.796][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:56.797][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:02:56.798][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.799][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.801][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:02:56.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:56.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.811][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2025-04-12 16:02:56.811][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:02:56.812][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:02:56.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:56.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:56.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:56.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:56.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:56.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:56.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:56.823][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:02:56.825][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:02:56.826][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-12 16:02:56.827][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:02:56.828][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-12 16:02:56.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:56.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:56.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:56.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:56.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:56.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:56.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:56.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:56.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:56.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:56.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:56.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:56.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:56.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:56.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:56.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:56.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:56.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:56.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:56.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:56.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:56.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:56.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:56.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:56.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:56.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:56.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:56.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:56.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:56.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:56.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:56.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:56.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:56.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:56.895][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2025-04-12 16:02:56.895][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:56.896][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65675".
biodb.TRACE[2025-04-12 16:02:56.897][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:56.898][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:56.899][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:56.900][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:56.901][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:56.901][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:56.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:56.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:56.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:56.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:56.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:56.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:56.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:56.912][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.DEBUG[2025-04-12 16:02:56.914][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:56.915][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:56.916][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.TRACE[2025-04-12 16:02:57.248][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675).
biodb.DEBUG[2025-04-12 16:02:57.584][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:57.585][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.content"
biodb.TRACE[2025-04-12 16:02:57.589][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.request"
biodb.TRACE[2025-04-12 16:02:57.591][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml"
biodb.DEBUG[2025-04-12 16:02:57.592][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:57.593][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:57.594][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:57.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:57.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:57.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:57.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:57.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:57.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:57.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:57.606][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:57.607][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:57.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:57.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:57.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.613][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:57.614][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:57.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.615][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.616][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:57.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:57.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.619][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:57.620][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:57.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:57.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:57.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.626][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:57.627][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:57.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.628][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:57.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:57.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.632][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:57.633][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:57.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.635][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:57.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:57.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.639][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:57.640][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:57.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.641][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.642][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:57.643][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:57.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.645][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.646][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:57.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:57.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.649][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:57.650][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:57.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.651][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:57.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:57.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.656][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:57.657][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:57.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.658][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:57.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:57.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.662][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:57.663][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:57.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.665][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.666][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:57.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:57.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.669][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:57.670][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:57.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.672][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:57.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:57.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:57.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:57.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:57.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:57.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:57.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:57.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:57.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:57.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:57.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:57.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:57.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:57.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:57.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:57.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:57.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:57.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:57.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:57.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:57.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:57.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:57.715][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2025-04-12 16:02:57.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:57.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:57.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:57.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:57.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:57.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:57.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:57.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:57.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:57.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:57.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:57.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:57.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:57.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:57.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:57.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:57.735][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2025-04-12 16:02:57.736][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:57.737][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66318".
biodb.TRACE[2025-04-12 16:02:57.738][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:57.739][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:57.739][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:57.740][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:57.741][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:57.742][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:57.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:57.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:57.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:57.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:57.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:57.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:57.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:57.753][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.DEBUG[2025-04-12 16:02:57.755][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:57.756][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:57.757][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.TRACE[2025-04-12 16:02:58.087][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318).
biodb.DEBUG[2025-04-12 16:02:58.428][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:58.430][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.content"
biodb.TRACE[2025-04-12 16:02:58.433][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.request"
biodb.TRACE[2025-04-12 16:02:58.435][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml"
biodb.DEBUG[2025-04-12 16:02:58.436][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:58.437][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:58.438][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:58.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:58.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:58.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:58.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:58.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:58.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:58.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:58.449][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:58.450][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:58.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.451][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:58.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:58.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.455][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:58.456][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:58.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.457][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.458][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:58.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:58.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.461][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:58.462][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:58.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.464][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.465][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:58.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:58.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.468][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:58.469][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:58.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:58.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:58.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.474][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:58.475][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:58.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:58.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:58.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.480][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:58.481][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:58.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.484][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:58.484][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:58.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.487][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:58.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:58.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.490][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:58.491][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:58.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:58.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:58.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.496][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:58.497][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:58.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:58.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:58.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.503][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:58.503][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:58.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.505][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.506][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:58.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:58.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.509][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:58.510][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:58.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:58.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:58.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:58.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:58.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:58.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:58.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:58.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:58.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:58.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:58.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:58.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:58.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:58.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:58.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:58.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:58.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:58.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:58.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:58.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:58.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:58.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:58.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:58.546][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2025-04-12 16:02:58.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:58.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:58.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:58.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:58.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:58.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:58.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:58.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:58.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:58.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:58.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:58.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:58.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:58.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:58.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:58.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:58.565][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2025-04-12 16:02:58.566][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:58.567][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67547".
biodb.TRACE[2025-04-12 16:02:58.568][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:58.569][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:58.570][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:58.570][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:58.571][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:58.572][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:58.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:58.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:58.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:58.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:58.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:58.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:58.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:58.584][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.DEBUG[2025-04-12 16:02:58.587][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:58.588][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:58.589][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.TRACE[2025-04-12 16:02:58.922][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547).
biodb.DEBUG[2025-04-12 16:02:59.334][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:02:59.336][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.content"
biodb.TRACE[2025-04-12 16:02:59.338][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.request"
biodb.TRACE[2025-04-12 16:02:59.340][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml"
biodb.DEBUG[2025-04-12 16:02:59.342][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:02:59.343][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:02:59.344][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:02:59.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:59.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:59.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:59.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:59.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:59.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:59.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:02:59.355][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:59.356][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:59.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:59.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:59.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.361][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:59.362][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:59.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.364][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:02:59.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:02:59.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.367][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:59.368][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:59.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.370][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.371][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:02:59.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:02:59.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.374][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:59.375][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:59.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:02:59.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:02:59.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.380][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:59.381][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:59.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.387][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:02:59.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:02:59.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.397][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:59.398][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:59.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.400][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:59.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:02:59.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.403][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:59.404][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:59.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.407][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:02:59.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:02:59.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.410][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:59.410][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:59.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:59.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:59.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.416][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:59.417][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:59.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:02:59.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:02:59.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.422][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:59.423][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:59.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.425][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:02:59.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:02:59.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.428][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:59.429][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:59.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:02:59.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:02:59.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:59.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:59.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:59.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:59.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:59.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:59.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:02:59.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:02:59.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:59.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:59.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:59.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:59.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:59.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:59.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:59.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:59.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:59.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:59.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:02:59.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:02:59.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:59.463][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2025-04-12 16:02:59.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:59.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:59.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:59.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:59.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:02:59.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:59.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:02:59.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:02:59.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:02:59.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:59.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:59.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:59.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:59.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:59.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:59.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:59.482][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2025-04-12 16:02:59.483][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:02:59.484][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69550".
biodb.TRACE[2025-04-12 16:02:59.485][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:02:59.486][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:02:59.487][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:02:59.488][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:02:59.489][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:02:59.489][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:02:59.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:02:59.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:02:59.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:02:59.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:02:59.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:02:59.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:02:59.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:02:59.500][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.DEBUG[2025-04-12 16:02:59.502][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:02:59.503][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:02:59.504][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.TRACE[2025-04-12 16:02:59.836][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550).
biodb.DEBUG[2025-04-12 16:03:00.175][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:00.177][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.content"
biodb.TRACE[2025-04-12 16:03:00.179][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.request"
biodb.TRACE[2025-04-12 16:03:00.182][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml"
biodb.DEBUG[2025-04-12 16:03:00.183][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:00.184][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:00.185][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:00.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:00.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:00.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:00.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:00.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:00.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:00.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:00.195][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:00.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:00.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.198][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:00.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:00.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.202][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:00.203][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:00.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.204][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.205][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:00.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:00.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.209][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:00.209][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:00.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.211][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.212][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:00.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:00.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.215][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:00.216][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:00.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.217][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:00.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:00.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.222][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:00.222][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:00.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.224][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:00.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:00.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.228][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:00.229][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:00.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.231][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:00.232][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:00.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.234][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:00.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:00.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.237][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:00.238][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:00.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.239][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:00.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:00.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.244][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:00.244][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:00.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:00.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:00.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.250][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:00.251][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:00.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.253][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:00.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:00.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.256][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:00.257][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:00.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:00.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:00.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:00.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:00.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:00.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:00.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:00.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:00.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:00.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:00.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:00.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:00.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:00.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:00.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:00.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:00.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:00.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:00.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:00.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:00.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:00.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:00.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:00.293][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2025-04-12 16:03:00.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:00.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:00.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:00.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:00.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:00.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:00.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:00.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:00.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:00.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:00.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:00.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:00.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:00.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:00.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:00.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:00.312][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2025-04-12 16:03:00.313][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:00.314][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71520".
biodb.TRACE[2025-04-12 16:03:00.315][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:00.316][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:00.317][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:00.317][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:00.318][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:00.319][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:00.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:00.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:00.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:00.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:00.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:00.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:00.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:00.330][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.DEBUG[2025-04-12 16:03:00.340][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:00.341][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:00.342][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.TRACE[2025-04-12 16:03:00.677][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520).
biodb.DEBUG[2025-04-12 16:03:01.016][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:01.017][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.content"
biodb.TRACE[2025-04-12 16:03:01.020][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.request"
biodb.TRACE[2025-04-12 16:03:01.022][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml"
biodb.DEBUG[2025-04-12 16:03:01.023][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:01.024][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:01.025][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:01.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:01.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:01.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:01.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:01.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:01.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:01.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:01.036][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:01.037][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:01.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.038][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:01.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:01.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.042][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:01.042][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:01.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.044][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.045][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:01.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:01.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.048][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:01.049][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:01.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.051][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:01.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:01.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.054][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:01.055][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:01.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.056][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:01.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:01.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.060][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:01.061][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:01.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:01.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:01.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.066][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:01.067][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:01.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.068][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.069][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:01.070][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:01.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.072][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:01.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:01.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.075][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:01.076][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:01.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.078][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:01.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:01.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.081][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:01.082][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:01.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:01.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:01.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.087][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:01.088][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:01.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.090][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:01.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:01.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.093][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:01.094][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:01.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:01.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:01.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:01.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:01.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:01.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:01.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:01.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:01.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:01.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:01.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:01.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:01.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:01.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:01.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:01.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:01.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:01.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:01.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:01.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:01.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:01.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:01.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:01.129][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2025-04-12 16:03:01.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:01.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:01.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:01.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:01.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:01.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:01.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:01.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:01.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:01.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:01.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:01.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:01.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:01.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:01.148][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2025-04-12 16:03:01.149][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:01.150][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77600".
biodb.TRACE[2025-04-12 16:03:01.151][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:01.152][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:01.153][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:01.154][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:01.155][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:01.155][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:01.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:01.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:01.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:01.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:01.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:01.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:01.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:01.166][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.DEBUG[2025-04-12 16:03:01.168][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:01.169][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:01.170][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.TRACE[2025-04-12 16:03:01.506][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600).
biodb.DEBUG[2025-04-12 16:03:01.842][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:01.843][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.content"
biodb.TRACE[2025-04-12 16:03:01.846][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.request"
biodb.TRACE[2025-04-12 16:03:01.848][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml"
biodb.DEBUG[2025-04-12 16:03:01.850][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:01.851][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:01.852][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:01.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:01.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:01.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:01.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:01.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:01.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:01.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:01.863][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:01.864][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:01.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.866][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:01.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:01.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.870][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:01.870][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:01.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.873][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:01.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:01.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.876][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:01.877][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:01.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.879][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:01.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:01.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.883][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:01.883][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:01.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:01.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:01.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.889][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:01.890][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:01.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:01.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:01.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.896][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:01.896][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:01.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.899][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:01.900][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:01.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.901][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.902][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:01.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:01.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.906][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:01.907][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:01.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.908][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:01.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:01.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.913][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:01.914][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:01.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.915][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:01.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:01.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.919][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:01.920][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:01.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.921][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.922][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:01.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:01.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.926][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:01.927][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:01.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:01.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:01.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:01.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:01.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:01.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:01.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:01.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:01.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:01.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:01.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:01.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:01.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:01.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:01.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:01.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:01.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:01.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:01.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:01.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:01.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:01.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:01.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:01.975][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2025-04-12 16:03:01.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:01.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:01.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:01.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:01.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:01.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:01.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:01.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:01.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:01.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:01.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:01.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:01.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:01.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:01.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:01.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:01.995][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2025-04-12 16:03:01.995][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:01.996][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77601".
biodb.TRACE[2025-04-12 16:03:01.997][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:01.998][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:01.999][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:02.000][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:02.001][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:02.001][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:02.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:02.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:02.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:02.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:02.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:02.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:02.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:02.012][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.DEBUG[2025-04-12 16:03:02.014][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:02.015][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:02.016][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.TRACE[2025-04-12 16:03:02.349][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601).
biodb.DEBUG[2025-04-12 16:03:02.710][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:02.712][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.content"
biodb.TRACE[2025-04-12 16:03:02.714][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.request"
biodb.TRACE[2025-04-12 16:03:02.716][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml"
biodb.DEBUG[2025-04-12 16:03:02.718][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:02.719][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:02.720][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:02.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:02.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:02.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:02.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:02.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:02.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:02.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:02.731][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:02.732][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:02.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.733][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:02.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:02.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.738][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:02.738][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:02.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.740][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.741][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:02.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:02.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.744][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:02.745][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:02.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.747][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:02.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:02.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.751][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:02.752][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:02.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:02.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:02.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.758][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:02.758][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:02.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.760][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:02.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:02.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.764][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:02.765][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:02.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.767][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.768][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:02.768][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:02.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.770][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.771][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:02.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:02.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.774][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:02.775][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:02.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:02.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:02.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.781][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:02.781][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:02.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:02.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:02.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.787][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:02.788][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:02.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.790][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:02.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:02.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.793][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:02.794][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:02.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.796][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:02.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:02.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:02.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:02.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:02.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:02.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:02.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:02.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:02.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:02.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:02.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:02.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:02.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:02.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:02.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:02.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:02.831][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2025-04-12 16:03:02.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:02.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:02.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:02.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:02.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:02.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:02.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:02.841][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:02.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:02.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:02.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:02.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:02.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:02.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:02.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:02.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.858][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:02.859][private$selectFields]
biodb.TRACE[2025-04-12 16:03:02.859][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:02.860][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:02.861][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:02.861][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.862][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.864][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.866][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.867][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:02.868][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:02.869][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.870][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.872][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:02.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.883][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-12 16:03:02.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:02.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:02.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:02.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:02.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:02.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:02.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:02.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.899][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:02.900][private$selectFields]
biodb.TRACE[2025-04-12 16:03:02.901][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:02.901][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:02.902][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:02.903][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.905][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.906][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.907][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.909][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:02.910][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:02.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.912][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.913][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.914][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:02.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.924][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2025-04-12 16:03:02.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:02.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:02.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:02.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:02.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:02.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:02.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:02.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.947][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:02.948][private$selectFields]
biodb.TRACE[2025-04-12 16:03:02.949][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:02.950][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:02.950][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:02.951][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.953][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.956][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.957][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:02.958][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:02.958][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.959][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.961][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.961][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:02.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:02.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.971][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2025-04-12 16:03:02.972][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:02.973][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-12 16:03:02.980][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:03:02.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:03:02.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.983][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:03:02.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:03:02.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:02.986][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:03:02.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:03:02.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-12 16:03:02.992][biodb::testThat]
biodb.INFO [2025-04-12 16:03:02.993][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-04-12 16:03:02.994][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:03:02.995][biodb::testThat]
biodb.TRACE[2025-04-12 16:03:02.997][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:03:02.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:03:02.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:02.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.000][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:03:03.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:03:03.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.003][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:03:03.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:03:03.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:03.060][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:03.063][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:03.064][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-12 16:03:03.065][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:03.066][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-12 16:03:03.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.087][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:03.090][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:03.091][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-12 16:03:03.092][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:03.093][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-12 16:03:03.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.130][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:03.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.147][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.148][private$selectFields]
biodb.TRACE[2025-04-12 16:03:03.149][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:03.150][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:03.150][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.153][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.155][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.156][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.157][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.158][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.160][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.162][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:03.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.172][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-12 16:03:03.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.189][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.190][private$selectFields]
biodb.TRACE[2025-04-12 16:03:03.190][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:03.191][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:03.192][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.195][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.198][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.199][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.199][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.200][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.203][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:03.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.214][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:03:03.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.235][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.236][private$selectFields]
biodb.TRACE[2025-04-12 16:03:03.236][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:03.237][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:03.238][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.239][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.239][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.244][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.244][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.245][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.247][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.248][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.249][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:03.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.259][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-12 16:03:03.260][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:03.261][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:03.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:03.273][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:03.275][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:03.276][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-12 16:03:03.277][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:03.278][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-12 16:03:03.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.317][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:03.319][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:03.320][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-12 16:03:03.321][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:03.322][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-12 16:03:03.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.379][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:03.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.396][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.396][private$selectFields]
biodb.TRACE[2025-04-12 16:03:03.397][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:03.398][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:03.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.399][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.400][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.401][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.402][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.403][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.406][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.407][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.408][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.409][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.410][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:03.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.421][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:03:03.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.438][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.439][private$selectFields]
biodb.TRACE[2025-04-12 16:03:03.439][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:03.440][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:03.441][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.442][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.443][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.445][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.446][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.448][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.449][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.450][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.451][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.452][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.453][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:03.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.464][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-12 16:03:03.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.479][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.480][private$selectFields]
biodb.TRACE[2025-04-12 16:03:03.481][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:03.482][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:03.482][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.483][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.484][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.485][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.486][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.487][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.488][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.489][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.490][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.491][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.494][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:03.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.511][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-12 16:03:03.511][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:03.512][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:03.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:03.524][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:03.526][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:03.528][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-12 16:03:03.529][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:03.530][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-12 16:03:03.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.678][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:03.681][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:03.682][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-12 16:03:03.683][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:03.684][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-12 16:03:03.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:03.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.740][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:03.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.757][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.758][private$selectFields]
biodb.TRACE[2025-04-12 16:03:03.758][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:03.759][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:03.760][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.761][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.761][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.764][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.767][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.768][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.768][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.769][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.772][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:03.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.782][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:03:03.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.803][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.803][private$selectFields]
biodb.TRACE[2025-04-12 16:03:03.804][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:03.805][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:03.806][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.806][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.807][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.810][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.812][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.813][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.814][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.815][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.817][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:03.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.827][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-12 16:03:03.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.844][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.844][private$selectFields]
biodb.TRACE[2025-04-12 16:03:03.845][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:03.846][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:03.846][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.848][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.851][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.851][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.853][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.853][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.854][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:03.855][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.856][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.857][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.858][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:03.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:03.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.868][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-12 16:03:03.869][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:03.870][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-12 16:03:03.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:03.938][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:03.941][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:03.942][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-12 16:03:03.943][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:03.944][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-12 16:03:03.946][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:03.948][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:03.949][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-12 16:03:03.950][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:03.951][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-12 16:03:03.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:03.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:03.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:03.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:03.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:03.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:03.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:03.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:03.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:03.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:03.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:03.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:04.008][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:04.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:04.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:04.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:04.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:04.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:04.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:04.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:04.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.024][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.025][private$selectFields]
biodb.TRACE[2025-04-12 16:03:04.026][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:04.027][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:04.027][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.028][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.029][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.031][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.032][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.034][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.035][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.035][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.037][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.038][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.039][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:04.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.049][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-12 16:03:04.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:04.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:04.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:04.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:04.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:04.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:04.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:04.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.066][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.067][private$selectFields]
biodb.TRACE[2025-04-12 16:03:04.067][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:04.068][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:04.069][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.069][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.072][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.072][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.073][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.081][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.082][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.084][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.085][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.086][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:04.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.095][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:03:04.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:04.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:04.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:04.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:04.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:04.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:04.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:04.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.111][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.112][private$selectFields]
biodb.TRACE[2025-04-12 16:03:04.112][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:04.113][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:04.114][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.116][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.117][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.118][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.120][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.121][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.121][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.123][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.125][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:04.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.135][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-12 16:03:04.135][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:04.136][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:04.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:04.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:04.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:04.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:04.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:04.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:04.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:04.147][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:04.149][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:04.150][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-12 16:03:04.151][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:04.152][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-12 16:03:04.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:04.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:04.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:04.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:04.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:04.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:04.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:04.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:04.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:04.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:04.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:04.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:04.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:04.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:04.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:04.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:04.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:04.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:04.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:04.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:04.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:04.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:04.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:04.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:04.209][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:04.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:04.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:04.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:04.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:04.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:04.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:04.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:04.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.226][private$selectFields]
biodb.TRACE[2025-04-12 16:03:04.226][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:04.227][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:04.228][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.229][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.229][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.232][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.234][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.234][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.235][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.239][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:04.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.249][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:03:04.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:04.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:04.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:04.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:04.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:04.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:04.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:04.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.266][private$selectFields]
biodb.TRACE[2025-04-12 16:03:04.267][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:04.268][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:04.268][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.269][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.270][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.272][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.275][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.276][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.277][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.278][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.279][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.280][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:04.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.290][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-12 16:03:04.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:04.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:04.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:04.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:04.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:04.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:04.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:04.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.306][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.307][private$selectFields]
biodb.TRACE[2025-04-12 16:03:04.308][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:04.308][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:04.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.310][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.311][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.313][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.313][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.316][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.317][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.318][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.319][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.321][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:04.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.331][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-12 16:03:04.332][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:04.333][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:04.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:04.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:04.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:04.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:04.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:04.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:04.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:04.344][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:04.347][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:04.348][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-12 16:03:04.349][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:04.350][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-12 16:03:04.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:04.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:04.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:04.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:04.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:04.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:04.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:04.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:04.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:04.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:04.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:04.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:04.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:04.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:04.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:04.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:04.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:04.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:04.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:04.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:04.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:04.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:04.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:04.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:04.432][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:04.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:04.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:04.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:04.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:04.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:04.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:04.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:04.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.448][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.449][private$selectFields]
biodb.TRACE[2025-04-12 16:03:04.449][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:04.450][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:04.451][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.452][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.454][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.455][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.457][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.458][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.459][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.461][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.462][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:04.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.472][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-12 16:03:04.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:04.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:04.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:04.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:04.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:04.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:04.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:04.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.488][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.489][private$selectFields]
biodb.TRACE[2025-04-12 16:03:04.489][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:04.490][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:04.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.491][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.494][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.495][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.495][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.497][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.498][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.499][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.501][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.503][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:04.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.514][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-12 16:03:04.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:04.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:04.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:04.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:04.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:04.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:04.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:04.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.532][private$selectFields]
biodb.TRACE[2025-04-12 16:03:04.533][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:04.534][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:04.535][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.538][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.541][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.542][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.543][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:04.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.546][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.547][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:04.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:04.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.559][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-04-12 16:03:04.560][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:04.561][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-12 16:03:04.580][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:03:04.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:03:04.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.584][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:03:04.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:03:04.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.587][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:03:04.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:03:04.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.594][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:04.595][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:04.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.598][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.598][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:04.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.600][ef$get] fields variable is a list.
biodb.INFO [2025-04-12 16:03:04.602][biodb::testThat]
biodb.INFO [2025-04-12 16:03:04.603][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-04-12 16:03:04.604][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:03:04.604][biodb::testThat]
biodb.TRACE[2025-04-12 16:03:04.607][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:03:04.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:03:04.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.610][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:03:04.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:03:04.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.614][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:03:04.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:03:04.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:04.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:04.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:04.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:04.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:04.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:04.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:04.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:04.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:04.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:04.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:04.671][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:04.678][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:04.679][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:04.681][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:03:05.017][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:03:05.527][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:05.529][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content"
biodb.TRACE[2025-04-12 16:03:05.532][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.request"
biodb.DEBUG[2025-04-12 16:03:05.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:05.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:05.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:05.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:05.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:05.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:05.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:05.546][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2025-04-12 16:03:05.547][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:05.548][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3014".
biodb.TRACE[2025-04-12 16:03:05.549][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:05.550][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:05.551][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:05.552][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:05.552][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:05.553][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:05.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:05.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:05.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:05.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:05.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:05.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:05.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:05.564][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.DEBUG[2025-04-12 16:03:05.566][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:05.567][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:05.568][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.TRACE[2025-04-12 16:03:05.915][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014).
biodb.DEBUG[2025-04-12 16:03:06.252][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:06.254][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.content"
biodb.TRACE[2025-04-12 16:03:06.256][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.request"
biodb.TRACE[2025-04-12 16:03:06.258][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml"
biodb.DEBUG[2025-04-12 16:03:06.260][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:06.261][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:06.262][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:06.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:06.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:06.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:06.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:06.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:06.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:06.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:06.272][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:06.273][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:06.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:06.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:06.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.279][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:06.280][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:06.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.282][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:06.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:06.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.285][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:06.286][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:06.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:06.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:06.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.292][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:06.293][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:06.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.294][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:06.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:06.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.299][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:06.300][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:06.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.301][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:06.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:06.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.306][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:06.307][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:06.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.309][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:06.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:06.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.313][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:06.314][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:06.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.315][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.316][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:06.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:06.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.319][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:06.320][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:06.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:06.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:06.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.326][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:06.327][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:06.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.328][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:06.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:06.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.332][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:06.333][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:06.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.335][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.336][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:06.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:06.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.339][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:06.340][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:06.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:06.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:06.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:06.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:06.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:06.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:06.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:06.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:06.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:06.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:06.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:06.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:06.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:06.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:06.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:06.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:06.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:06.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:06.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:06.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:06.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:06.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:06.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:06.376][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2025-04-12 16:03:06.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:06.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:06.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:06.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:06.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:06.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:06.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:06.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:06.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:06.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:06.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:06.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:06.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:06.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:06.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:06.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:06.395][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2025-04-12 16:03:06.396][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:06.397][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7567".
biodb.TRACE[2025-04-12 16:03:06.398][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:06.398][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:06.399][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:06.400][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:06.401][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:06.401][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:06.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:06.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:06.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:06.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:06.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:06.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:06.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:06.413][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.DEBUG[2025-04-12 16:03:06.415][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:06.416][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:06.417][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.TRACE[2025-04-12 16:03:06.752][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567).
biodb.DEBUG[2025-04-12 16:03:07.094][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:07.096][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.content"
biodb.TRACE[2025-04-12 16:03:07.098][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.request"
biodb.TRACE[2025-04-12 16:03:07.100][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml"
biodb.DEBUG[2025-04-12 16:03:07.102][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:07.102][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:07.103][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:07.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:07.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:07.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:07.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:07.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:07.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:07.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:07.117][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:07.117][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:07.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:07.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:07.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.123][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:07.124][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:07.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.126][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:07.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:07.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.129][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:07.130][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:07.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.132][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:07.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:07.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.135][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:07.136][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:07.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.138][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:07.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:07.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.142][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:07.142][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:07.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.144][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:07.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:07.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.148][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:07.148][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:07.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.150][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.151][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:07.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:07.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.154][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:07.155][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:07.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.156][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.162][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:07.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:07.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.173][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:07.174][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:07.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.175][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:07.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:07.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.179][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:07.180][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:07.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.182][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:07.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:07.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.185][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:07.186][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:07.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.188][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:07.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:07.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.192][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:07.192][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:07.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.195][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:07.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:07.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:07.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:07.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:07.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:07.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:07.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:07.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:07.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:07.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:07.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:07.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:07.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:07.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:07.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:07.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:07.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:07.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:07.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:07.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:07.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:07.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:07.227][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2025-04-12 16:03:07.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:07.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:07.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:07.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:07.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:07.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:07.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:07.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:07.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:07.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:07.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:07.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:07.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:07.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:07.245][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2025-04-12 16:03:07.246][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:07.247][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8021".
biodb.TRACE[2025-04-12 16:03:07.248][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:07.249][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:07.250][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:07.251][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:07.252][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:07.253][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:07.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:07.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:07.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:07.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:07.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:07.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:07.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:07.264][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.DEBUG[2025-04-12 16:03:07.266][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:07.267][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:07.268][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.TRACE[2025-04-12 16:03:07.603][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021).
biodb.DEBUG[2025-04-12 16:03:07.951][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:07.953][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.content"
biodb.TRACE[2025-04-12 16:03:07.956][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.request"
biodb.TRACE[2025-04-12 16:03:07.958][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml"
biodb.DEBUG[2025-04-12 16:03:07.959][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:07.960][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:07.961][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:07.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:07.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:07.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:07.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:07.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:07.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:07.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:07.972][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:07.973][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:07.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.974][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:07.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:07.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.978][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:07.979][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:07.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.980][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.981][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:07.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:07.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.985][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:07.985][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:07.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.987][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.988][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:07.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:07.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.991][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:07.992][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:07.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.993][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:07.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:07.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:07.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:07.997][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:07.998][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:07.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:08.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:08.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.004][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:08.004][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:08.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.006][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.007][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:08.008][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:08.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.009][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.010][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:08.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:08.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.013][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:08.014][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:08.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:08.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:08.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.020][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:08.021][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:08.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.022][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:08.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:08.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.026][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:08.027][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:08.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.029][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.030][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:08.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:08.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.033][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:08.033][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:08.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.035][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:08.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:08.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:08.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:08.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:08.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:08.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:08.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:08.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:08.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:08.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:08.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:08.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:08.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:08.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:08.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:08.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:08.070][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2025-04-12 16:03:08.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:08.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:08.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:08.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:08.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:08.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:08.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:08.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:08.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:08.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:08.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:08.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:08.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:08.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:08.088][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2025-04-12 16:03:08.089][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:08.090][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30382".
biodb.TRACE[2025-04-12 16:03:08.091][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:08.092][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:08.093][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:08.094][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:08.095][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:08.095][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:08.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:08.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:08.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:08.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:08.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:08.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:08.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:08.107][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.DEBUG[2025-04-12 16:03:08.109][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:08.110][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:08.111][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.TRACE[2025-04-12 16:03:08.445][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382).
biodb.DEBUG[2025-04-12 16:03:08.780][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:08.782][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.content"
biodb.TRACE[2025-04-12 16:03:08.785][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.request"
biodb.TRACE[2025-04-12 16:03:08.788][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml"
biodb.DEBUG[2025-04-12 16:03:08.789][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:08.790][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:08.801][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:08.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:08.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:08.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:08.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:08.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:08.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:08.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:08.812][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:08.813][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:08.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.815][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:08.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:08.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.819][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:08.820][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:08.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.822][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:08.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:08.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.825][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:08.826][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:08.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:08.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:08.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.832][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:08.833][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:08.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:08.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:08.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.838][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:08.839][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:08.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.841][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:08.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:08.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.845][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:08.845][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:08.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.847][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.848][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:08.849][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:08.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.851][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:08.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:08.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.854][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:08.855][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:08.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.857][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:08.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:08.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.861][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:08.862][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:08.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.864][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:08.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:08.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.867][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:08.868][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:08.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.870][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.871][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:08.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:08.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.874][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:08.875][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:08.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.876][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:08.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:08.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:08.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:08.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:08.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:08.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:08.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:08.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:08.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:08.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:08.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:08.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:08.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:08.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:08.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:08.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:08.912][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2025-04-12 16:03:08.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:08.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:08.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:08.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:08.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:08.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:08.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:08.922][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:08.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:08.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:08.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:08.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:08.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:08.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:08.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:08.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.939][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:08.940][private$selectFields]
biodb.TRACE[2025-04-12 16:03:08.941][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:08.941][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:08.942][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:08.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.946][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.947][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.950][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:08.950][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:08.951][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.953][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.954][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:08.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.965][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-12 16:03:08.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:08.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:08.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:08.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:08.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:08.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:08.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:08.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.981][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:08.981][private$selectFields]
biodb.TRACE[2025-04-12 16:03:08.982][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:08.983][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:08.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:08.985][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.985][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.987][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.988][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.991][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:08.992][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:08.992][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.993][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.995][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.995][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:08.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:08.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:08.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:08.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:09.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:09.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:09.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:09.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:09.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:09.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:09.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:09.006][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-04-12 16:03:09.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:09.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:09.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:09.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:09.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:09.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:09.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:09.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:09.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:09.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:09.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:09.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:09.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:09.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:09.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:09.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:09.023][private$selectFields]
biodb.TRACE[2025-04-12 16:03:09.023][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:09.024][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:09.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:09.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:09.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:09.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:09.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:09.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:09.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:09.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:09.031][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:09.032][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:09.033][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:09.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:09.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:09.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:09.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:09.037][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:09.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:09.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:09.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:09.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:09.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:09.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:09.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:09.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:09.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:09.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:09.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:09.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:09.048][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-04-12 16:03:09.049][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:09.049][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:09.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:09.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:09.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:09.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:09.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:09.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:09.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:09.061][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:09.063][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:09.064][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:09.066][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:03:09.400][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:03:09.747][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:09.748][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content"
biodb.TRACE[2025-04-12 16:03:09.752][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.request"
biodb.DEBUG[2025-04-12 16:03:09.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:09.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:09.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:09.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:09.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:09.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:09.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:09.772][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2025-04-12 16:03:09.773][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:09.774][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9710".
biodb.TRACE[2025-04-12 16:03:09.775][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:09.776][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:09.777][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:09.777][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:09.778][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:09.779][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:09.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:09.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:09.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:09.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:09.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:09.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:09.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:09.790][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.DEBUG[2025-04-12 16:03:09.793][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:09.794][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:09.795][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.TRACE[2025-04-12 16:03:10.128][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710).
biodb.DEBUG[2025-04-12 16:03:10.465][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:10.467][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.content"
biodb.TRACE[2025-04-12 16:03:10.470][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.request"
biodb.TRACE[2025-04-12 16:03:10.472][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml"
biodb.DEBUG[2025-04-12 16:03:10.473][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:10.474][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:10.475][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:10.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:10.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:10.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:10.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:10.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:10.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:10.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:10.486][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:10.486][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:10.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.488][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:10.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:10.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.491][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:10.492][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:10.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.494][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:10.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:10.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.497][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:10.498][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:10.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:10.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:10.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.504][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:10.504][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:10.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.506][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:10.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:10.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.510][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:10.510][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:10.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:10.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:10.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.515][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:10.516][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:10.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.519][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:10.520][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:10.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.522][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:10.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:10.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.525][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:10.526][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:10.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.527][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:10.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:10.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.531][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:10.532][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:10.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.534][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:10.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:10.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.538][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:10.539][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:10.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.540][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.541][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:10.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:10.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.544][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:10.545][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:10.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.546][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:10.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:10.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:10.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:10.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:10.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:10.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:10.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:10.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:10.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:10.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:10.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:10.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:10.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:10.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:10.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:10.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:10.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:10.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:10.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:10.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:10.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:10.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:10.579][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2025-04-12 16:03:10.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:10.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:10.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:10.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:10.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:10.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:10.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:10.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:10.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:10.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:10.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:10.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:10.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:10.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:10.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:10.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:10.598][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2025-04-12 16:03:10.599][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:10.600][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65530".
biodb.TRACE[2025-04-12 16:03:10.601][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:10.602][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:10.603][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:10.603][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:10.604][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:10.605][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:10.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:10.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:10.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:10.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:10.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:10.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:10.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:10.616][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.DEBUG[2025-04-12 16:03:10.618][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:10.618][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:10.619][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.TRACE[2025-04-12 16:03:10.952][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530).
biodb.DEBUG[2025-04-12 16:03:11.292][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:11.293][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.content"
biodb.TRACE[2025-04-12 16:03:11.296][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.request"
biodb.TRACE[2025-04-12 16:03:11.299][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml"
biodb.DEBUG[2025-04-12 16:03:11.300][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:11.301][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:11.302][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:11.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:11.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:11.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:11.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:11.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:11.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:11.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:11.313][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:11.314][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:11.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.315][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:11.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:11.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.320][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:11.321][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:11.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.323][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:11.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:11.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.326][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:11.327][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:11.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.328][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.329][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:11.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:11.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.332][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:11.333][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:11.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.334][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:11.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:11.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.338][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:11.339][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:11.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.340][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:11.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:11.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.344][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:11.345][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:11.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.347][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:11.348][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:11.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.350][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:11.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:11.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.353][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:11.354][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:11.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:11.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:11.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.359][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:11.360][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:11.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.363][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:11.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:11.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.366][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:11.367][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:11.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.369][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:11.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:11.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.372][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:11.383][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:11.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:11.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:11.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:11.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:11.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:11.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:11.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:11.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:11.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:11.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:11.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:11.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:11.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:11.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:11.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:11.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:11.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:11.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:11.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:11.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:11.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:11.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:11.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:11.417][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2025-04-12 16:03:11.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:11.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:11.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:11.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:11.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:11.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:11.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:11.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:11.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:11.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:11.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:11.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:11.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:11.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:11.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:11.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:11.435][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2025-04-12 16:03:11.436][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:11.437][cch$loadFileContent] Trying to load 1 files from cache: [1]: "72338".
biodb.TRACE[2025-04-12 16:03:11.438][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:11.439][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:11.440][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:11.441][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:11.441][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:11.442][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:11.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:11.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:11.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:11.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:11.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:11.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:11.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:11.453][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.DEBUG[2025-04-12 16:03:11.455][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:11.456][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:11.457][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.TRACE[2025-04-12 16:03:11.804][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338).
biodb.DEBUG[2025-04-12 16:03:12.136][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:12.137][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.content"
biodb.TRACE[2025-04-12 16:03:12.140][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.request"
biodb.TRACE[2025-04-12 16:03:12.142][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml"
biodb.DEBUG[2025-04-12 16:03:12.143][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:12.144][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:12.145][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:12.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:12.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:12.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:12.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:12.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:12.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:12.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:12.157][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:12.157][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:12.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.159][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:12.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:12.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.163][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:12.164][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:12.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.166][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:12.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:12.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.169][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:12.170][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:12.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.173][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:12.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:12.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.176][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:12.176][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:12.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.178][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:12.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:12.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.182][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:12.183][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:12.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:12.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:12.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.188][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:12.189][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:12.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.190][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.191][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:12.192][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:12.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.193][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.194][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:12.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:12.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.198][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:12.199][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:12.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:12.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:12.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.204][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:12.205][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:12.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.207][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:12.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:12.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.210][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:12.211][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:12.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.212][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.213][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:12.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:12.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.216][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:12.217][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:12.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.218][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:12.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:12.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:12.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:12.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:12.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:12.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:12.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:12.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:12.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:12.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:12.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:12.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:12.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:12.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:12.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:12.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:12.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:12.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:12.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:12.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:12.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:12.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:12.252][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2025-04-12 16:03:12.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:12.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:12.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:12.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:12.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:12.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:12.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:12.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:12.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:12.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:12.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:12.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:12.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:12.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:12.271][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2025-04-12 16:03:12.272][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:12.273][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77926".
biodb.TRACE[2025-04-12 16:03:12.274][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:12.275][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:12.275][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:12.276][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:12.277][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:12.278][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:12.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:12.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:12.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:12.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:12.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:12.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:12.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:12.288][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.DEBUG[2025-04-12 16:03:12.291][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:12.291][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:12.292][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.TRACE[2025-04-12 16:03:12.624][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926).
biodb.DEBUG[2025-04-12 16:03:12.960][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:12.962][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.content"
biodb.TRACE[2025-04-12 16:03:12.966][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.request"
biodb.TRACE[2025-04-12 16:03:12.969][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml"
biodb.DEBUG[2025-04-12 16:03:12.972][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:12.973][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:12.974][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:12.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:12.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:12.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:12.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:12.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:12.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:12.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:12.986][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:12.987][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:12.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.988][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:12.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:12.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.993][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:12.994][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:12.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.995][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:12.996][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:12.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:12.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:12.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.010][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:13.011][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:13.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.013][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:13.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:13.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.017][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:13.018][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:13.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.019][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:13.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:13.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.024][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:13.024][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:13.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.026][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:13.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:13.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.030][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:13.031][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:13.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.033][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:13.034][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:13.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.035][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.036][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:13.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:13.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.040][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:13.040][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:13.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.042][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:13.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:13.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.046][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:13.047][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:13.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.048][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:13.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:13.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.052][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:13.053][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:13.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.055][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:13.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:13.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.059][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:13.060][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:13.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.061][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.062][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:13.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:13.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:13.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:13.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:13.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:13.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:13.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:13.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:13.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:13.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:13.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:13.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:13.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:13.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:13.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:13.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:13.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:13.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:13.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:13.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:13.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:13.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:13.096][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2025-04-12 16:03:13.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:13.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:13.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:13.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:13.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:13.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:13.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:13.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:13.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:13.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:13.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:13.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:13.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:13.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:13.115][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2025-04-12 16:03:13.116][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:13.117][cch$loadFileContent] Trying to load 1 files from cache: [1]: "82369".
biodb.TRACE[2025-04-12 16:03:13.118][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:13.119][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:13.120][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:13.121][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:13.122][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:13.123][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:13.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:13.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:13.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:13.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:13.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:13.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:13.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:13.134][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.DEBUG[2025-04-12 16:03:13.136][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:13.137][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:13.138][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.TRACE[2025-04-12 16:03:13.472][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369).
biodb.DEBUG[2025-04-12 16:03:13.821][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:13.822][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.content"
biodb.TRACE[2025-04-12 16:03:13.825][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.request"
biodb.TRACE[2025-04-12 16:03:13.828][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml"
biodb.DEBUG[2025-04-12 16:03:13.829][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:13.830][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:13.831][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:13.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:13.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:13.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:13.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:13.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:13.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:13.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:13.841][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:13.843][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:13.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.844][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:13.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:13.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.848][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:13.849][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:13.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.851][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:13.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:13.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.854][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:13.855][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:13.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.857][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.858][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:13.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:13.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.861][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:13.861][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:13.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:13.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:13.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.867][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:13.868][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:13.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.870][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:13.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:13.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.874][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:13.875][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:13.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.876][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.877][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:13.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:13.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.880][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:13.881][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:13.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.882][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.883][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:13.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:13.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.886][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:13.887][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:13.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.888][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:13.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:13.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.892][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:13.893][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:13.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.894][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:13.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:13.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.899][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:13.899][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:13.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.901][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.902][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:13.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:13.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.905][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:13.906][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:13.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:13.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:13.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:13.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:13.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:13.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:13.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:13.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:13.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:13.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:13.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:13.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:13.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:13.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:13.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:13.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:13.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:13.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:13.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:13.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:13.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:13.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:13.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:13.942][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2025-04-12 16:03:13.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:13.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:13.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:13.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:13.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:13.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:13.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:13.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:13.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:13.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:13.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:13.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:13.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:13.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:13.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:13.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:13.961][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2025-04-12 16:03:13.966][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:13.970][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90204".
biodb.TRACE[2025-04-12 16:03:13.972][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:13.972][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:13.973][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:13.974][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:13.975][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:13.975][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:13.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:13.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:13.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:13.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:13.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:13.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:13.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:13.987][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.DEBUG[2025-04-12 16:03:13.989][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:13.989][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:13.990][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.TRACE[2025-04-12 16:03:14.327][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204).
biodb.DEBUG[2025-04-12 16:03:14.674][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:14.676][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.content"
biodb.TRACE[2025-04-12 16:03:14.679][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.request"
biodb.TRACE[2025-04-12 16:03:14.681][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml"
biodb.DEBUG[2025-04-12 16:03:14.682][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:14.683][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:14.684][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:14.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:14.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:14.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:14.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:14.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:14.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:14.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:14.695][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:14.696][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:14.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.697][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:14.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:14.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.701][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:14.702][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:14.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.705][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:14.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:14.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.708][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:14.708][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:14.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.711][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:14.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:14.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.714][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:14.714][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:14.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.716][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:14.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:14.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.720][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:14.720][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:14.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.722][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:14.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:14.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.726][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:14.727][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:14.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.728][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.729][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:14.730][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:14.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.732][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:14.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:14.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.738][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:14.739][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:14.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.740][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:14.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:14.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.744][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:14.745][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:14.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:14.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:14.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.752][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:14.754][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:14.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.757][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.758][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:14.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:14.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.762][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:14.762][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:14.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.764][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:14.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:14.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:14.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:14.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:14.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:14.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:14.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:14.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:14.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:14.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:14.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:14.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:14.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:14.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:14.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:14.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:14.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:14.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:14.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:14.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:14.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:14.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:14.799][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2025-04-12 16:03:14.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:14.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:14.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:14.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:14.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:14.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:14.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:14.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:14.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:14.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:14.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:14.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:14.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:14.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:14.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:14.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:14.819][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2025-04-12 16:03:14.819][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:14.821][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132793".
biodb.TRACE[2025-04-12 16:03:14.822][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:14.823][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:14.823][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:14.824][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:14.825][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:14.826][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:14.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:14.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:14.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:14.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:14.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:14.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:14.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:14.840][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.DEBUG[2025-04-12 16:03:14.842][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:14.843][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:14.844][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.TRACE[2025-04-12 16:03:15.175][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793).
biodb.DEBUG[2025-04-12 16:03:15.522][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:15.524][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.content"
biodb.TRACE[2025-04-12 16:03:15.527][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.request"
biodb.TRACE[2025-04-12 16:03:15.529][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml"
biodb.DEBUG[2025-04-12 16:03:15.532][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:15.534][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:15.537][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:15.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:15.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:15.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:15.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:15.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:15.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:15.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:15.548][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:15.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:15.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:15.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:15.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.555][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:15.556][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:15.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.557][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.558][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:15.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:15.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.562][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:15.563][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:15.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.564][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.565][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:15.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:15.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.568][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:15.569][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:15.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.570][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:15.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:15.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.575][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:15.576][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:15.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:15.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:15.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.581][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:15.582][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:15.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.584][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:15.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:15.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.587][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:15.588][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:15.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.590][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:15.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:15.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.593][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:15.594][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:15.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.595][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:15.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:15.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.599][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:15.600][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:15.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.602][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.603][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:15.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:15.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.606][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:15.607][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:15.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.609][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:15.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:15.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.612][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:15.613][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:15.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.615][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:15.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:15.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:15.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:15.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:15.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:15.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:15.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:15.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:15.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:15.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:15.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:15.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:15.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:15.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:15.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:15.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:15.672][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2025-04-12 16:03:15.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:15.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:15.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:15.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:15.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:15.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:15.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:15.682][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:15.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:15.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:15.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:15.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:15.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:15.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:15.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:15.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.698][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:15.699][private$selectFields]
biodb.TRACE[2025-04-12 16:03:15.700][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:15.701][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:15.701][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:15.702][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.703][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.705][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.706][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.708][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:15.709][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:15.709][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.710][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.711][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.712][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:15.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.723][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-04-12 16:03:15.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:15.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:15.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:15.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:15.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:15.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:15.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:15.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.739][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:15.740][private$selectFields]
biodb.TRACE[2025-04-12 16:03:15.741][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:15.741][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:15.742][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:15.743][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.744][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.745][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.746][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.747][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.748][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.749][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:15.750][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:15.750][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.751][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.754][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:15.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.764][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-04-12 16:03:15.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:15.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:15.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:15.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:15.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:15.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:15.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:15.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.780][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:15.780][private$selectFields]
biodb.TRACE[2025-04-12 16:03:15.781][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:15.782][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:15.783][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:15.783][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.784][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.786][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.787][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.790][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:15.791][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:15.791][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.792][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.794][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:15.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:15.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:15.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:15.807][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-04-12 16:03:15.807][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:15.808][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:15.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:15.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:15.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:15.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:15.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:15.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:15.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:15.826][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:15.829][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:15.830][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:15.831][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:03:16.164][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:03:16.498][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:16.500][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content"
biodb.TRACE[2025-04-12 16:03:16.504][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.request"
biodb.DEBUG[2025-04-12 16:03:16.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:16.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:16.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:16.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:16.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:16.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:16.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:16.519][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2025-04-12 16:03:16.520][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:16.521][cch$loadFileContent] Trying to load 1 files from cache: [1]: "131378".
biodb.TRACE[2025-04-12 16:03:16.522][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:16.523][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:16.524][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:16.525][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:16.525][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:16.526][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:16.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:16.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:16.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:16.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:16.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:16.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:16.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:16.543][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.DEBUG[2025-04-12 16:03:16.545][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:16.545][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:16.546][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.TRACE[2025-04-12 16:03:16.886][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378).
biodb.DEBUG[2025-04-12 16:03:17.219][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:17.221][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.content"
biodb.TRACE[2025-04-12 16:03:17.224][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.request"
biodb.TRACE[2025-04-12 16:03:17.230][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml"
biodb.DEBUG[2025-04-12 16:03:17.231][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:17.232][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:17.233][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:17.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:17.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:17.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:17.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:17.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:17.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:17.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:17.245][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:17.246][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:17.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.247][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:17.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:17.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.252][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:17.253][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:17.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.254][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.255][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:17.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:17.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.258][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:17.259][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:17.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.261][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:17.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:17.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.264][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:17.265][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:17.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:17.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:17.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.271][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:17.277][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:17.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:17.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:17.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.288][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:17.289][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:17.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.292][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:17.295][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:17.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.298][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.299][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:17.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:17.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.302][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:17.303][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:17.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.304][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:17.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:17.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.308][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:17.309][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:17.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.311][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:17.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:17.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.315][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:17.315][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:17.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.317][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.318][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:17.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:17.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.321][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:17.322][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:17.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.323][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.324][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:17.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:17.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:17.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:17.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:17.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:17.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:17.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:17.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:17.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:17.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:17.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:17.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:17.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:17.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:17.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:17.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:17.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:17.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:17.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:17.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:17.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:17.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:17.360][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2025-04-12 16:03:17.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:17.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:17.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:17.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:17.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:17.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:17.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:17.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:17.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:17.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:17.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:17.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:17.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:17.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:17.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:17.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:17.384][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2025-04-12 16:03:17.385][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:17.386][cch$loadFileContent] Trying to load 1 files from cache: [1]: "214202".
biodb.TRACE[2025-04-12 16:03:17.387][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:17.388][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:17.389][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:17.390][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:17.391][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:17.391][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:17.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:17.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:17.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:17.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:17.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:17.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:17.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:17.403][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.DEBUG[2025-04-12 16:03:17.405][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:17.409][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:17.411][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.TRACE[2025-04-12 16:03:17.743][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202).
biodb.DEBUG[2025-04-12 16:03:18.075][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:18.077][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.content"
biodb.TRACE[2025-04-12 16:03:18.080][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.request"
biodb.TRACE[2025-04-12 16:03:18.082][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml"
biodb.DEBUG[2025-04-12 16:03:18.089][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:18.090][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:18.091][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:18.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:18.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:18.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:18.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:18.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:18.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:18.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:18.101][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:18.102][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:18.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.103][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:18.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:18.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.107][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:18.108][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:18.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.109][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.110][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:18.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:18.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.113][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:18.114][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:18.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:18.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:18.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.120][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:18.120][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:18.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.122][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:18.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:18.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.126][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:18.126][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:18.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.128][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:18.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:18.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.132][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:18.133][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:18.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.134][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.135][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:18.136][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:18.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.138][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:18.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:18.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.141][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:18.142][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:18.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.144][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:18.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:18.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.148][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:18.148][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:18.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.150][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.151][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:18.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:18.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.154][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:18.155][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:18.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.156][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.157][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:18.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:18.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.160][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:18.161][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:18.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.164][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:18.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:18.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:18.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:18.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:18.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:18.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:18.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:18.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:18.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:18.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:18.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:18.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:18.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:18.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:18.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:18.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:18.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:18.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:18.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:18.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:18.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:18.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:18.215][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2025-04-12 16:03:18.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:18.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:18.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:18.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:18.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:18.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:18.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:18.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:18.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:18.226][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:18.229][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:18.229][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:18.231][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:03:18.571][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:03:18.902][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:18.904][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content"
biodb.TRACE[2025-04-12 16:03:18.908][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.request"
biodb.DEBUG[2025-04-12 16:03:18.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:18.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:18.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:18.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:18.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:18.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:18.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:18.919][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2025-04-12 16:03:18.920][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:18.921][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51836".
biodb.TRACE[2025-04-12 16:03:18.927][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:18.933][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:18.934][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:18.935][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:18.936][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:18.937][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:18.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:18.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:18.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:18.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:18.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:18.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:18.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:18.948][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.DEBUG[2025-04-12 16:03:18.950][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:18.951][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:18.952][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.TRACE[2025-04-12 16:03:19.284][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836).
biodb.DEBUG[2025-04-12 16:03:19.623][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:19.625][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.content"
biodb.TRACE[2025-04-12 16:03:19.628][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.request"
biodb.TRACE[2025-04-12 16:03:19.630][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml"
biodb.DEBUG[2025-04-12 16:03:19.632][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:19.633][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:19.634][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:19.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:19.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:19.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:19.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:19.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:19.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:19.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:19.645][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:19.646][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:19.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.647][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:19.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:19.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.651][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:19.652][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:19.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.653][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.654][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:19.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:19.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.657][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:19.658][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:19.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.660][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.661][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:19.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:19.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.664][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:19.665][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:19.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:19.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:19.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.670][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:19.671][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:19.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:19.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:19.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.677][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:19.677][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:19.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.680][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:19.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:19.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.683][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:19.684][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:19.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.686][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.687][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:19.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:19.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.690][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:19.690][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:19.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.692][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:19.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:19.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.696][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:19.697][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:19.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.698][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:19.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:19.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.703][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:19.703][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:19.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.705][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.706][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:19.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:19.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.709][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:19.709][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:19.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.711][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:19.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:19.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:19.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:19.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:19.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:19.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:19.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:19.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:19.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:19.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:19.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:19.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:19.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:19.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:19.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:19.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:19.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:19.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:19.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:19.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:19.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:19.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:19.746][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2025-04-12 16:03:19.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:19.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:19.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:19.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:19.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:19.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:19.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:19.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:19.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:19.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:19.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:19.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:19.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:19.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:19.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:19.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:19.766][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2025-04-12 16:03:19.767][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:19.768][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51837".
biodb.TRACE[2025-04-12 16:03:19.774][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:19.774][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:19.775][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:19.776][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:19.777][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:19.778][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:19.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:19.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:19.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:19.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:19.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:19.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:19.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:19.791][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.DEBUG[2025-04-12 16:03:19.793][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:19.794][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:19.795][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.TRACE[2025-04-12 16:03:20.130][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837).
biodb.DEBUG[2025-04-12 16:03:20.467][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:20.470][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.content"
biodb.TRACE[2025-04-12 16:03:20.473][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.request"
biodb.TRACE[2025-04-12 16:03:20.478][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml"
biodb.DEBUG[2025-04-12 16:03:20.479][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:20.480][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:20.481][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:20.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:20.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:20.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:20.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:20.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:20.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:20.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:20.495][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:20.496][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:20.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.497][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:20.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:20.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.501][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:20.502][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:20.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.505][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:20.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:20.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.508][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:20.509][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:20.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.510][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:20.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:20.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.514][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:20.515][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:20.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.516][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:20.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:20.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.520][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:20.521][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:20.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:20.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:20.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.526][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:20.527][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:20.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.530][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:20.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:20.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.533][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:20.534][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:20.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.535][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.536][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:20.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:20.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.539][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:20.540][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:20.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.541][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:20.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:20.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.545][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:20.546][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:20.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.548][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.549][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:20.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:20.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.553][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:20.554][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:20.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.556][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:20.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:20.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.562][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:20.567][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:20.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:20.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:20.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:20.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:20.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:20.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:20.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:20.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:20.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:20.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:20.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:20.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:20.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:20.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:20.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:20.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:20.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:20.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:20.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:20.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:20.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:20.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:20.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:20.614][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2025-04-12 16:03:20.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:20.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:20.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:20.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:20.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:20.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:20.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:20.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:20.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:20.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:20.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:20.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:20.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:20.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:20.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:20.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:20.632][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2025-04-12 16:03:20.633][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:20.634][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132205".
biodb.TRACE[2025-04-12 16:03:20.636][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:20.637][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:20.639][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:20.643][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:20.646][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:20.647][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:20.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:20.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:20.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:20.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:20.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:20.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:20.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:20.658][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.DEBUG[2025-04-12 16:03:20.660][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:20.660][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:20.661][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.TRACE[2025-04-12 16:03:27.284][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205).
biodb.DEBUG[2025-04-12 16:03:27.617][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:27.618][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.content"
biodb.TRACE[2025-04-12 16:03:27.621][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.request"
biodb.TRACE[2025-04-12 16:03:27.623][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml"
biodb.DEBUG[2025-04-12 16:03:27.624][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:27.625][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:27.626][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:27.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:27.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:27.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:27.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:27.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:27.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:27.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:27.637][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:27.638][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:27.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.639][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:27.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:27.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.643][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:27.644][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:27.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.646][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.647][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:27.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:27.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.650][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:27.651][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:27.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.653][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:27.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:27.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.656][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:27.657][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:27.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.659][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:27.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:27.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.663][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:27.664][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:27.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.665][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:27.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:27.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.669][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:27.670][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:27.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.672][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:27.673][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.674][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.675][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:27.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.679][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:27.680][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:27.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:27.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:27.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.685][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:27.686][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:27.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.687][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:27.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:27.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.692][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:27.693][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:27.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.694][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.695][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:27.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:27.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.698][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:27.699][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:27.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.702][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:27.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:27.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:27.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:27.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:27.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:27.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:27.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:27.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:27.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:27.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:27.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:27.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:27.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:27.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:27.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:27.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:27.737][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2025-04-12 16:03:27.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:27.747][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:27.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:27.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:27.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:27.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:27.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:27.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:27.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:27.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.764][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:27.765][private$selectFields]
biodb.TRACE[2025-04-12 16:03:27.765][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:27.766][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:27.767][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:27.767][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.768][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.770][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.771][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.774][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:27.775][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:27.775][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.776][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.778][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:27.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.789][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-04-12 16:03:27.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:27.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:27.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:27.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:27.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:27.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:27.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:27.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.806][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:27.807][private$selectFields]
biodb.TRACE[2025-04-12 16:03:27.808][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:27.809][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:27.809][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:27.810][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.811][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.821][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.822][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.824][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.825][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:27.826][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:27.826][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.827][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.829][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:27.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.840][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-04-12 16:03:27.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:27.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:27.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:27.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:27.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:27.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:27.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:27.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.856][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:27.857][private$selectFields]
biodb.TRACE[2025-04-12 16:03:27.857][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:27.858][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:27.859][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:27.860][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.860][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.862][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.863][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.864][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.866][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:27.867][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:27.867][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.868][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.870][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:27.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.881][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-04-12 16:03:27.881][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:27.882][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:27.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:27.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:27.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:27.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:27.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:27.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:27.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:27.911][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:27.914][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:27.914][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-12 16:03:27.915][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:27.917][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-12 16:03:27.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:27.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:27.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:27.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:27.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:27.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:27.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:27.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:27.938][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:27.941][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:27.942][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-12 16:03:27.943][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:27.945][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-12 16:03:27.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:27.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:27.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:27.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:27.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:27.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:27.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:27.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:27.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:27.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:27.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:27.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:27.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:27.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:27.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:27.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:27.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:27.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:27.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:27.987][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:27.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:27.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:27.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:27.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:27.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:27.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:27.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:27.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:27.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.004][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.004][private$selectFields]
biodb.TRACE[2025-04-12 16:03:28.005][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:28.006][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:28.006][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.010][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.011][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.013][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.014][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.015][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.018][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.018][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:28.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.029][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-12 16:03:28.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.046][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.047][private$selectFields]
biodb.TRACE[2025-04-12 16:03:28.047][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:28.048][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:28.049][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.050][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.053][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.054][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.055][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.056][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.057][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.057][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.059][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.061][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:28.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.072][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:03:28.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.088][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.089][private$selectFields]
biodb.TRACE[2025-04-12 16:03:28.090][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:28.091][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:28.092][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.092][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.093][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.096][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.099][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.099][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.100][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.101][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.103][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.103][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:28.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.120][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-12 16:03:28.121][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:28.121][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:28.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:28.134][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:28.136][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:28.137][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-12 16:03:28.138][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:28.139][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-12 16:03:28.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:28.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:28.179][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:28.181][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:28.182][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-12 16:03:28.183][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:28.184][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-12 16:03:28.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:28.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:28.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:28.244][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:28.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.261][private$selectFields]
biodb.TRACE[2025-04-12 16:03:28.262][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:28.263][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:28.264][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.270][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.270][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.271][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.274][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.275][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:28.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.286][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:03:28.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.303][private$selectFields]
biodb.TRACE[2025-04-12 16:03:28.304][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:28.304][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:28.305][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.307][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.309][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.312][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.313][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.314][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.315][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.317][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:28.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.328][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-12 16:03:28.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.345][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.346][private$selectFields]
biodb.TRACE[2025-04-12 16:03:28.347][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:28.347][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:28.348][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.349][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.350][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.352][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.353][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.355][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.355][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.356][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.358][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.360][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:28.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.371][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-12 16:03:28.372][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:28.373][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:28.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:28.385][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:28.388][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:28.389][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-12 16:03:28.390][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:28.391][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-12 16:03:28.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:28.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:28.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:28.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:28.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:28.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:28.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:28.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:28.551][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:28.553][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:28.554][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-12 16:03:28.555][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:28.557][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-12 16:03:28.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:28.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:28.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:28.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:28.616][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:28.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.633][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.634][private$selectFields]
biodb.TRACE[2025-04-12 16:03:28.635][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:28.635][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:28.636][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.639][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.641][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.643][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.644][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.644][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.645][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.646][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.647][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.648][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:28.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.659][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:03:28.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.675][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.676][private$selectFields]
biodb.TRACE[2025-04-12 16:03:28.676][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:28.677][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:28.678][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.680][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.682][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.683][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.684][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.685][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.686][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.687][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.689][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.690][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:28.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.706][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-12 16:03:28.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:28.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.722][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.723][private$selectFields]
biodb.TRACE[2025-04-12 16:03:28.724][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:28.724][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:28.725][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.726][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.727][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.728][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.732][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.733][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:28.734][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.734][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.736][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:28.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:28.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:28.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:28.747][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-12 16:03:28.748][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:28.748][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:28.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:28.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:28.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:28.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:28.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:28.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:28.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:28.777][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:28.779][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:28.780][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:28.781][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:03:29.115][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:03:29.448][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:29.450][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content"
biodb.TRACE[2025-04-12 16:03:29.453][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.request"
biodb.DEBUG[2025-04-12 16:03:29.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:29.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:29.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:29.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:29.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:29.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:29.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:29.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:29.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:29.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:29.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:29.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:29.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:29.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:29.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:29.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:29.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:29.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:29.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:29.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:29.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:29.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:29.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:29.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:29.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:29.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:29.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:29.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:29.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:29.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:29.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:29.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:29.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:29.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:29.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:29.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:29.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:29.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:29.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:29.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:29.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:29.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:29.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:29.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:29.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:29.505][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2025-04-12 16:03:29.505][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:29.506][cch$loadFileContent] Trying to load 1 files from cache: [1]: "28243".
biodb.TRACE[2025-04-12 16:03:29.507][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:29.508][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:29.509][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:29.510][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:29.511][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:29.511][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:29.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:29.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:29.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:29.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:29.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:29.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:29.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:29.522][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.DEBUG[2025-04-12 16:03:29.524][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:29.525][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:29.526][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.TRACE[2025-04-12 16:03:29.864][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243).
biodb.DEBUG[2025-04-12 16:03:30.221][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:30.223][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.content"
biodb.TRACE[2025-04-12 16:03:30.226][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.request"
biodb.TRACE[2025-04-12 16:03:30.228][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml"
biodb.DEBUG[2025-04-12 16:03:30.230][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:30.231][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:30.232][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:30.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:30.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:30.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:30.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:30.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:30.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:30.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:30.243][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:30.244][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:30.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:30.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:30.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.250][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:30.251][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:30.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.253][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:30.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:30.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.256][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:30.257][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:30.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.259][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:30.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:30.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.263][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:30.263][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:30.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.265][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:30.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:30.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.269][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:30.269][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:30.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.271][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:30.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:30.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.275][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:30.276][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:30.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.277][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.278][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:30.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:30.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.281][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:30.282][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:30.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.284][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:30.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:30.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.287][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:30.288][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:30.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.290][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:30.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:30.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.294][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:30.294][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:30.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.296][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.297][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:30.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:30.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.300][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:30.301][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:30.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.303][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:30.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:30.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.306][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:30.307][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:30.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:30.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:30.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:30.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:30.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:30.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:30.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:30.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:30.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:30.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:30.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:30.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:30.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:30.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:30.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:30.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:30.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:30.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:30.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:30.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:30.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:30.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:30.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:30.354][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2025-04-12 16:03:30.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:30.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:30.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:30.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:30.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:30.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:30.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:30.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:30.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:30.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:30.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:30.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:30.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:30.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:30.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:30.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:30.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:30.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:30.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:30.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:30.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:30.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:30.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:30.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:30.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:30.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:30.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:30.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:30.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:30.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:30.392][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2025-04-12 16:03:30.392][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:30.393][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70786".
biodb.TRACE[2025-04-12 16:03:30.394][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:30.395][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:30.396][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:30.397][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:30.397][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:30.398][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:30.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:30.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:30.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:30.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:30.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:30.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:30.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:30.409][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.DEBUG[2025-04-12 16:03:30.411][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:30.412][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:30.413][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.TRACE[2025-04-12 16:03:30.747][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786).
biodb.DEBUG[2025-04-12 16:03:31.100][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:31.102][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.content"
biodb.TRACE[2025-04-12 16:03:31.105][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.request"
biodb.TRACE[2025-04-12 16:03:31.107][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml"
biodb.DEBUG[2025-04-12 16:03:31.108][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:31.109][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:31.110][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:31.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:31.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:31.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:31.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:31.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:31.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:31.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:31.121][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:31.122][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:31.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:31.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:31.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.128][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:31.129][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:31.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.130][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.131][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:31.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:31.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.134][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:31.135][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:31.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.136][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.137][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:31.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:31.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.140][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:31.141][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:31.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.143][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:31.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:31.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.146][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:31.147][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:31.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.149][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:31.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:31.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.153][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:31.154][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:31.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.155][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.156][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:31.157][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:31.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.158][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.159][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:31.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:31.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.162][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:31.163][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:31.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.164][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:31.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:31.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.168][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:31.169][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:31.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:31.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:31.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.175][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:31.176][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:31.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.177][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.178][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:31.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:31.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.182][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:31.182][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:31.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:31.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:31.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:31.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:31.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:31.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:31.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:31.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:31.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:31.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:31.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:31.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:31.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:31.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:31.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:31.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:31.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:31.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:31.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:31.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:31.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:31.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:31.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:31.227][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2025-04-12 16:03:31.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:31.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:31.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:31.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:31.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:31.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:31.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:31.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:31.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:31.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:31.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:31.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:31.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:31.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:31.249][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2025-04-12 16:03:31.250][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:31.251][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78144".
biodb.TRACE[2025-04-12 16:03:31.252][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:31.253][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:31.254][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:31.255][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:31.256][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:31.256][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:31.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:31.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:31.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:31.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:31.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:31.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:31.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:31.267][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.DEBUG[2025-04-12 16:03:31.269][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:31.270][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:31.271][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.TRACE[2025-04-12 16:03:31.608][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144).
biodb.DEBUG[2025-04-12 16:03:31.947][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:31.949][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.content"
biodb.TRACE[2025-04-12 16:03:31.952][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.request"
biodb.TRACE[2025-04-12 16:03:31.954][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml"
biodb.DEBUG[2025-04-12 16:03:31.955][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:31.956][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:31.957][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:31.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:31.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:31.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:31.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:31.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:31.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:31.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:31.968][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:31.968][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:31.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.970][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:31.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:31.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.974][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:31.975][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:31.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.976][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.977][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:31.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:31.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.980][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:31.981][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:31.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.982][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:31.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:31.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.986][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:31.987][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:31.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:31.989][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:31.989][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:31.990][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:31.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.001][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.003][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:32.003][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:32.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.005][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.006][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:32.007][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:32.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.009][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:32.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:32.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.012][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:32.012][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:32.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:32.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:32.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.018][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:32.018][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:32.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:32.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:32.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.024][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:32.026][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:32.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.028][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:32.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:32.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.032][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:32.032][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:32.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.034][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:32.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:32.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:32.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:32.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:32.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:32.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:32.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:32.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:32.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:32.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:32.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:32.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:32.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:32.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:32.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:32.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:32.066][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2025-04-12 16:03:32.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:32.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:32.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:32.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:32.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:32.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:32.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:32.075][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:32.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:32.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:32.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:32.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:32.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:32.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:32.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:32.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.091][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:32.092][private$selectFields]
biodb.TRACE[2025-04-12 16:03:32.092][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:32.093][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:32.094][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:32.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.097][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.098][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.100][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.100][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:32.101][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:32.102][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.103][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.105][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:32.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.115][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:03:32.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:32.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:32.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:32.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:32.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:32.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:32.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:32.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.130][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:32.131][private$selectFields]
biodb.TRACE[2025-04-12 16:03:32.132][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:32.132][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:32.133][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:32.134][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.135][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.136][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.137][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.138][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.139][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.140][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:32.141][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:32.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.142][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.143][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.144][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:32.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.154][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-04-12 16:03:32.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:32.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:32.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:32.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:32.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:32.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:32.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:32.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.170][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:32.171][private$selectFields]
biodb.TRACE[2025-04-12 16:03:32.171][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:32.172][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:32.173][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:32.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.175][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.177][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.179][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.180][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:32.180][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:32.181][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.182][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.183][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.184][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:32.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:32.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:32.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:32.194][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-04-12 16:03:32.195][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:32.195][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:32.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:32.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:32.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:32.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:32.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:32.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:32.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:32.207][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:32.209][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:32.210][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:32.212][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:03:32.547][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:03:33.039][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:33.041][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content"
biodb.TRACE[2025-04-12 16:03:33.044][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.request"
biodb.DEBUG[2025-04-12 16:03:33.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:33.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:33.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:33.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:33.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:33.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:33.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:33.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:33.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:33.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:33.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:33.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:33.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:33.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:33.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:33.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:33.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:33.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:33.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:33.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:33.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:33.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:33.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:33.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:33.110][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:33.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:33.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:33.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:33.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:33.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:33.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:33.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:33.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.126][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:33.127][private$selectFields]
biodb.TRACE[2025-04-12 16:03:33.127][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:33.128][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:33.129][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:33.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.130][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.133][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.134][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.135][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:33.136][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:33.137][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.138][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.139][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.140][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:33.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.149][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:03:33.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:33.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:33.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:33.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:33.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:33.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:33.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:33.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.165][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:33.165][private$selectFields]
biodb.TRACE[2025-04-12 16:03:33.166][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:33.167][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:33.168][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:33.168][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.169][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.171][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.173][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.174][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:33.175][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:33.176][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.177][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.178][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.179][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:33.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.189][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-12 16:03:33.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:33.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:33.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:33.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:33.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:33.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:33.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:33.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.205][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:33.205][private$selectFields]
biodb.TRACE[2025-04-12 16:03:33.206][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:33.207][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:33.208][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:33.208][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.211][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.212][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.213][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:33.215][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:33.215][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.216][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.218][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.218][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:33.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:33.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.228][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-12 16:03:33.229][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:33.230][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:33.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:33.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:33.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:33.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:33.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:33.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:33.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:33.242][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:33.244][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:33.245][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:33.246][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:03:33.585][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:03:33.925][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:33.927][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content"
biodb.TRACE[2025-04-12 16:03:33.930][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.request"
biodb.DEBUG[2025-04-12 16:03:33.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:33.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:33.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:33.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:33.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:33.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:33.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:33.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:33.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:33.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:33.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:33.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:33.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:33.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:33.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:33.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:33.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:33.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:33.959][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2025-04-12 16:03:33.960][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:33.962][cch$loadFileContent] Trying to load 1 files from cache: [1]: "47739".
biodb.TRACE[2025-04-12 16:03:33.963][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:33.963][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:33.964][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:33.965][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:33.966][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:33.967][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:33.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:33.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:33.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:33.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:33.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:33.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:33.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:33.978][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.DEBUG[2025-04-12 16:03:33.980][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:33.981][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:33.982][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.TRACE[2025-04-12 16:03:34.317][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739).
biodb.DEBUG[2025-04-12 16:03:34.650][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:34.652][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.content"
biodb.TRACE[2025-04-12 16:03:34.655][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.request"
biodb.TRACE[2025-04-12 16:03:34.657][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml"
biodb.DEBUG[2025-04-12 16:03:34.659][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:34.660][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:34.661][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:34.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:34.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:34.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:34.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:34.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:34.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:34.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:34.673][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:34.674][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:34.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.676][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:34.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:34.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.680][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:34.681][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:34.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.684][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:34.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:34.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.687][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:34.688][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:34.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.691][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:34.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:34.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.695][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:34.695][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:34.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.697][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:34.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:34.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.701][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:34.702][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:34.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:34.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:34.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.708][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:34.709][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:34.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.714][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:34.720][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:34.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.729][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:34.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:34.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.732][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:34.733][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:34.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.734][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:34.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:34.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.739][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:34.740][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:34.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.741][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.742][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:34.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:34.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.746][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:34.746][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:34.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.748][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.749][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:34.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:34.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.752][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:34.753][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:34.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:34.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:34.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:34.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:34.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:34.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:34.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:34.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:34.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:34.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:34.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:34.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:34.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:34.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:34.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:34.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:34.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:34.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:34.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:34.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:34.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:34.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:34.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:34.793][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2025-04-12 16:03:34.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:34.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:34.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:34.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:34.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:34.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:34.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:34.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:34.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:34.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:34.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:34.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:34.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:34.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:34.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:34.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:34.811][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2025-04-12 16:03:34.812][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:34.813][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51744".
biodb.TRACE[2025-04-12 16:03:34.814][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:34.815][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:34.816][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:34.817][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:34.818][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:34.818][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:34.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:34.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:34.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:34.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:34.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:34.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:34.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:34.829][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.DEBUG[2025-04-12 16:03:34.832][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:34.833][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:34.834][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.TRACE[2025-04-12 16:03:35.169][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744).
biodb.DEBUG[2025-04-12 16:03:35.501][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:35.503][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.content"
biodb.TRACE[2025-04-12 16:03:35.506][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.request"
biodb.TRACE[2025-04-12 16:03:35.508][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml"
biodb.DEBUG[2025-04-12 16:03:35.509][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:35.510][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:35.511][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:35.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:35.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:35.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:35.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:35.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:35.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:35.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:35.523][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:35.524][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:35.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:35.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:35.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.530][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:35.530][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:35.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.533][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:35.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:35.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.536][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:35.537][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:35.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.539][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.540][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:35.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:35.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.543][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:35.544][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:35.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.545][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:35.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:35.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.550][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:35.551][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:35.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.552][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:35.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:35.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.556][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:35.557][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:35.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.560][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:35.560][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:35.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.562][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.563][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:35.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:35.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.567][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:35.567][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:35.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:35.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:35.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.573][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:35.574][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:35.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.576][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:35.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:35.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.580][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:35.581][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:35.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.584][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:35.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:35.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.587][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:35.588][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:35.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:35.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:35.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:35.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:35.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:35.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:35.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:35.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:35.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:35.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:35.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:35.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:35.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:35.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:35.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:35.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:35.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:35.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:35.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:35.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:35.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:35.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:35.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:35.627][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2025-04-12 16:03:35.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:35.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:35.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:35.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:35.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:35.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:35.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:35.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:35.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:35.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:35.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:35.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:35.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:35.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:35.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:35.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:35.647][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2025-04-12 16:03:35.647][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:35.649][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64473".
biodb.TRACE[2025-04-12 16:03:35.650][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:35.650][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:35.651][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:35.652][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:35.653][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:35.654][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:35.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:35.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:35.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:35.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:35.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:35.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:35.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:35.665][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.DEBUG[2025-04-12 16:03:35.667][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:35.668][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:35.669][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.TRACE[2025-04-12 16:03:36.002][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473).
biodb.DEBUG[2025-04-12 16:03:36.345][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:36.358][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.content"
biodb.TRACE[2025-04-12 16:03:36.362][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.request"
biodb.TRACE[2025-04-12 16:03:36.364][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml"
biodb.DEBUG[2025-04-12 16:03:36.366][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:36.367][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:36.368][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:36.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:36.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:36.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:36.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:36.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:36.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:36.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:36.379][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:36.380][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:36.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:36.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:36.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.386][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:36.386][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:36.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.388][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.389][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:36.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:36.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.393][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:36.394][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:36.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.396][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.397][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:36.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:36.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.401][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:36.402][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:36.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:36.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:36.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.408][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:36.409][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:36.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.411][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:36.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:36.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.415][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:36.416][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:36.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.419][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:36.420][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:36.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.422][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.423][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:36.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:36.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.426][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:36.427][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:36.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:36.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:36.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.434][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:36.435][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:36.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:36.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:36.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.441][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:36.442][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:36.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.443][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.444][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:36.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:36.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.448][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:36.449][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:36.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:36.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:36.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:36.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:36.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:36.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:36.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:36.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:36.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:36.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:36.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:36.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:36.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:36.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:36.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:36.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:36.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:36.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:36.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:36.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:36.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:36.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:36.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:36.491][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2025-04-12 16:03:36.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:36.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:36.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:36.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:36.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:36.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:36.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:36.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:36.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:36.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:36.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:36.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:36.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:36.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:36.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:36.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:36.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:36.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:36.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:36.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:36.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:36.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:36.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:36.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:36.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:36.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:36.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:36.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:36.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:36.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:36.531][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2025-04-12 16:03:36.532][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:36.534][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75244".
biodb.TRACE[2025-04-12 16:03:36.535][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:36.536][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:36.537][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:36.538][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:36.539][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:36.539][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:36.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:36.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:36.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:36.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:36.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:36.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:36.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:36.552][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.DEBUG[2025-04-12 16:03:36.554][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:36.555][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:36.556][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.TRACE[2025-04-12 16:03:36.891][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244).
biodb.DEBUG[2025-04-12 16:03:37.229][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:37.231][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.content"
biodb.TRACE[2025-04-12 16:03:37.235][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.request"
biodb.TRACE[2025-04-12 16:03:37.237][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml"
biodb.DEBUG[2025-04-12 16:03:37.239][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:37.240][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:37.241][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:37.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:37.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:37.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:37.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:37.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:37.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:37.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:37.254][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:37.255][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:37.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:37.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:37.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.261][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:37.262][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:37.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.264][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.265][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:37.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:37.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.268][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:37.269][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:37.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.271][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.272][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:37.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:37.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.276][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:37.277][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:37.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:37.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:37.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.283][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:37.284][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:37.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:37.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:37.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.290][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:37.291][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:37.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.294][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:37.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:37.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.297][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:37.298][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:37.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.300][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.301][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:37.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:37.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.304][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:37.305][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:37.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.307][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:37.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:37.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.312][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:37.313][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:37.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.315][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:37.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:37.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.319][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:37.320][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:37.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.323][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:37.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:37.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.326][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:37.327][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:37.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.330][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:37.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:37.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:37.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:37.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:37.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:37.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:37.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:37.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:37.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:37.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:37.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:37.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:37.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:37.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:37.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:37.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:37.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:37.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:37.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:37.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:37.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:37.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:37.381][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2025-04-12 16:03:37.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:37.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:37.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:37.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:37.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:37.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:37.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:37.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:37.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:37.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:37.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:37.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:37.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:37.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:37.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:37.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:37.403][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2025-04-12 16:03:37.403][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:37.405][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75311".
biodb.TRACE[2025-04-12 16:03:37.406][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:37.407][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:37.408][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:37.409][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:37.410][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:37.410][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:37.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:37.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:37.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:37.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:37.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:37.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:37.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:37.422][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.DEBUG[2025-04-12 16:03:37.424][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:37.425][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:37.426][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.TRACE[2025-04-12 16:03:37.759][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311).
biodb.DEBUG[2025-04-12 16:03:38.098][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:38.100][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.content"
biodb.TRACE[2025-04-12 16:03:38.103][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.request"
biodb.TRACE[2025-04-12 16:03:38.105][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml"
biodb.DEBUG[2025-04-12 16:03:38.106][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:38.107][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:38.108][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:38.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:38.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:38.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:38.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:38.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:38.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:38.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:38.121][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:38.122][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:38.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:38.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:38.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.128][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:38.129][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:38.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.132][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:38.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:38.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.135][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:38.136][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:38.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.139][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:38.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:38.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.143][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:38.144][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:38.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:38.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:38.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.150][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:38.151][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:38.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:38.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:38.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.157][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:38.158][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:38.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.159][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.161][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:38.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:38.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.164][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:38.165][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:38.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.168][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:38.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:38.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.171][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:38.172][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:38.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:38.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:38.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.178][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:38.179][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:38.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.182][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:38.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:38.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.186][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:38.187][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:38.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.189][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.190][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:38.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:38.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.193][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:38.194][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:38.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.196][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:38.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:38.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:38.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:38.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:38.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:38.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:38.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:38.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:38.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:38.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:38.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:38.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:38.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:38.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:38.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:38.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:38.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:38.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:38.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:38.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:38.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:38.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:38.235][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2025-04-12 16:03:38.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:38.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:38.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:38.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:38.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:38.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:38.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:38.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:38.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:38.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:38.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:38.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:38.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:38.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:38.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:38.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:38.255][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2025-04-12 16:03:38.255][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:38.257][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75350".
biodb.TRACE[2025-04-12 16:03:38.258][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:38.259][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:38.260][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:38.271][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:38.272][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:38.273][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:38.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:38.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:38.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:38.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:38.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:38.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:38.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:38.305][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.DEBUG[2025-04-12 16:03:38.307][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:38.308][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:38.309][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.TRACE[2025-04-12 16:03:38.642][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350).
biodb.DEBUG[2025-04-12 16:03:38.975][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:38.977][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.content"
biodb.TRACE[2025-04-12 16:03:38.980][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.request"
biodb.TRACE[2025-04-12 16:03:38.983][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml"
biodb.DEBUG[2025-04-12 16:03:38.984][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:38.985][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:38.986][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:38.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:38.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:38.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:38.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:38.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:38.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:38.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:38.999][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:39.000][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:39.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.001][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:39.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:39.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.006][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:39.007][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:39.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.009][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:39.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:39.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.013][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:39.025][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:39.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.027][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.029][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:39.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:39.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.032][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:39.033][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:39.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.035][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.036][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:39.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:39.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.039][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:39.040][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:39.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.042][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:39.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:39.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.046][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:39.047][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:39.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.049][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.050][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:39.051][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:39.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.053][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:39.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:39.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.057][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:39.058][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:39.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:39.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:39.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.064][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:39.065][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:39.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:39.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:39.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.071][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:39.072][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:39.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.075][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:39.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:39.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.078][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:39.079][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:39.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.082][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:39.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:39.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:39.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:39.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:39.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:39.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:39.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:39.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:39.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:39.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:39.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:39.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:39.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:39.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:39.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:39.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:39.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:39.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:39.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:39.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:39.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:39.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:39.119][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2025-04-12 16:03:39.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:39.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:39.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:39.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:39.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:39.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:39.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:39.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:39.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:39.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:39.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:39.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:39.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:39.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:39.155][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2025-04-12 16:03:39.156][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:39.157][cch$loadFileContent] Trying to load 1 files from cache: [1]: "87236".
biodb.TRACE[2025-04-12 16:03:39.158][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:39.159][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:39.160][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:39.161][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:39.162][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:39.163][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:39.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:39.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:39.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:39.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:39.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:39.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:39.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:39.175][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.DEBUG[2025-04-12 16:03:39.177][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:39.178][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:39.180][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.TRACE[2025-04-12 16:03:39.514][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236).
biodb.DEBUG[2025-04-12 16:03:39.856][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:39.858][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.content"
biodb.TRACE[2025-04-12 16:03:39.862][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.request"
biodb.TRACE[2025-04-12 16:03:39.864][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml"
biodb.DEBUG[2025-04-12 16:03:39.866][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:39.867][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:39.868][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:39.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:39.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:39.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:39.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:39.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:39.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:39.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:39.880][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:39.881][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:39.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.882][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:39.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:39.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.887][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:39.888][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:39.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.889][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.890][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:39.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:39.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.894][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:39.895][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:39.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.897][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:39.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:39.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.901][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:39.902][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:39.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.903][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:39.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:39.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.908][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:39.909][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:39.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.910][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:39.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:39.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.915][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:39.916][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:39.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.918][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.919][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:39.920][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:39.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.921][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.922][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:39.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:39.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.926][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:39.927][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:39.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:39.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:39.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.933][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:39.934][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:39.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.936][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:39.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:39.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.940][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:39.941][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:39.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.944][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:39.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:39.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.948][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:39.948][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:39.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.951][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:39.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:39.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:39.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:39.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:39.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:39.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:39.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:39.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:39.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:39.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:39.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:39.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:39.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:39.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:39.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:39.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:39.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:39.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:40.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:40.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:40.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:40.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:40.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:40.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:40.010][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2025-04-12 16:03:40.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:40.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:40.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:40.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:40.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:40.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:40.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:40.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:40.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:40.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:40.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:40.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:40.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:40.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:40.030][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2025-04-12 16:03:40.031][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:40.032][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132193".
biodb.TRACE[2025-04-12 16:03:40.033][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:40.040][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:40.044][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:40.045][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:40.046][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:40.047][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:40.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:40.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:40.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:40.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:40.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:40.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:40.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:40.060][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.DEBUG[2025-04-12 16:03:40.062][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:40.063][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:40.065][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.TRACE[2025-04-12 16:03:40.398][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193).
biodb.DEBUG[2025-04-12 16:03:40.740][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:40.742][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.content"
biodb.TRACE[2025-04-12 16:03:40.745][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.request"
biodb.TRACE[2025-04-12 16:03:40.747][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml"
biodb.DEBUG[2025-04-12 16:03:40.749][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:40.750][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:40.751][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:40.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:40.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:40.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:40.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:40.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:40.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:40.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:40.763][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:40.764][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:40.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:40.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:40.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.770][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:40.771][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:40.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.773][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:40.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:40.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.777][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:40.778][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:40.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:40.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:40.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.784][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:40.785][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:40.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:40.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:40.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.791][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:40.791][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:40.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.793][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:40.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:40.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.798][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:40.799][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:40.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.802][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:40.802][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:40.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.805][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:40.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:40.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.808][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:40.809][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:40.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:40.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:40.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.816][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:40.817][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:40.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.819][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:40.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:40.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.823][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:40.824][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:40.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.827][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:40.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:40.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.830][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:40.831][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:40.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.833][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.834][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:40.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:40.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:40.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:40.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:40.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:40.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:40.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:40.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:40.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:40.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:40.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:40.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:40.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:40.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:40.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:40.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:40.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:40.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:40.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:40.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:40.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:40.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:40.870][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2025-04-12 16:03:40.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:40.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:40.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:40.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:40.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:40.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:40.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:40.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:40.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:40.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:40.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:40.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:40.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:40.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:40.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:40.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:40.890][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2025-04-12 16:03:40.891][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:40.892][cch$loadFileContent] Trying to load 1 files from cache: [1]: "146002".
biodb.TRACE[2025-04-12 16:03:40.893][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:40.893][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:40.894][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:40.895][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:40.896][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:40.897][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:40.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:40.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:40.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:40.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:40.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:40.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:40.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:40.908][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.DEBUG[2025-04-12 16:03:40.910][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:40.910][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:40.911][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.TRACE[2025-04-12 16:03:41.243][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002).
biodb.DEBUG[2025-04-12 16:03:41.584][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:41.586][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.content"
biodb.TRACE[2025-04-12 16:03:41.589][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.request"
biodb.TRACE[2025-04-12 16:03:41.591][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml"
biodb.DEBUG[2025-04-12 16:03:41.592][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:41.593][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:41.594][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:41.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:41.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:41.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:41.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:41.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:41.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:41.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:41.605][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:41.606][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:41.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:41.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:41.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.612][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:41.613][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:41.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.615][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:41.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:41.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.618][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:41.619][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:41.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.620][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.621][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:41.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:41.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.624][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:41.625][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:41.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:41.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:41.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.631][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:41.631][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:41.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.633][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:41.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:41.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.637][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:41.638][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:41.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.639][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.640][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:41.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:41.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.642][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.643][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:41.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:41.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.647][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:41.647][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:41.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:41.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:41.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.653][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:41.654][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:41.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:41.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:41.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.659][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:41.660][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:41.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.663][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:41.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:41.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.666][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:41.667][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:41.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:41.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:41.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:41.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:41.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:41.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:41.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:41.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:41.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:41.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:41.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:41.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:41.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:41.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:41.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:41.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:41.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:41.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:41.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:41.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:41.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:41.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:41.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:41.714][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2025-04-12 16:03:41.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:41.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:41.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:41.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:41.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:41.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:41.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:41.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:41.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:41.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:41.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:41.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:41.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:41.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:41.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:41.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:41.732][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2025-04-12 16:03:41.733][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:41.734][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65641".
biodb.TRACE[2025-04-12 16:03:41.735][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:41.736][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:41.737][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:41.738][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:41.738][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:41.739][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:41.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:41.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:41.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:41.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:41.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:41.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:41.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:41.750][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.DEBUG[2025-04-12 16:03:41.752][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:41.752][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:41.754][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.TRACE[2025-04-12 16:03:42.089][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641).
biodb.DEBUG[2025-04-12 16:03:42.429][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:42.431][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.content"
biodb.TRACE[2025-04-12 16:03:42.434][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.request"
biodb.TRACE[2025-04-12 16:03:42.436][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml"
biodb.DEBUG[2025-04-12 16:03:42.438][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:42.439][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:42.439][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:42.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:42.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:42.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:42.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:42.452][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:42.453][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:42.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:42.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:42.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.459][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:42.460][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:42.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.463][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:42.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:42.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.466][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:42.467][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:42.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.469][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.470][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:42.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:42.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.473][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:42.474][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:42.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.475][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:42.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:42.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.480][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:42.481][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:42.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.482][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:42.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:42.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.487][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:42.488][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:42.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.491][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:42.492][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:42.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.494][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:42.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:42.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.498][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:42.499][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:42.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:42.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:42.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.505][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:42.506][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:42.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.507][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.509][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:42.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:42.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.512][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:42.513][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:42.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.515][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:42.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:42.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.519][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:42.519][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:42.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.522][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:42.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:42.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:42.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:42.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:42.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:42.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:42.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:42.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:42.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:42.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:42.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:42.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:42.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:42.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:42.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:42.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:42.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:42.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:42.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:42.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:42.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:42.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:42.559][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2025-04-12 16:03:42.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:42.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:42.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:42.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:42.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:42.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:42.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:42.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:42.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:42.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:42.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:42.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:42.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.580][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2025-04-12 16:03:42.581][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:42.582][cch$loadFileContent] Trying to load 1 files from cache: [1]: "144071".
biodb.TRACE[2025-04-12 16:03:42.583][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:42.584][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:42.585][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:42.586][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:42.587][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:42.587][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:42.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:42.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:42.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:42.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.599][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.DEBUG[2025-04-12 16:03:42.602][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:42.603][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:42.604][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.TRACE[2025-04-12 16:03:42.942][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071).
biodb.DEBUG[2025-04-12 16:03:43.278][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:43.280][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.content"
biodb.TRACE[2025-04-12 16:03:43.283][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.request"
biodb.TRACE[2025-04-12 16:03:43.285][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml"
biodb.DEBUG[2025-04-12 16:03:43.287][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:43.288][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:43.289][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:43.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:43.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:43.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:43.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:43.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:43.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:43.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:43.302][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.303][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.304][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.309][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:43.310][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:43.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.311][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.312][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:43.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:43.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.316][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:43.317][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:43.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.318][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.319][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:43.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:43.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.335][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:43.336][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:43.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.338][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:43.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:43.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.342][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.343][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.345][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.350][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:43.350][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:43.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.353][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:43.354][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.357][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:43.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.360][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:43.361][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:43.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:43.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:43.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.367][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:43.368][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:43.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.370][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:43.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:43.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.375][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:43.375][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:43.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.377][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.378][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:43.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:43.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.381][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:43.382][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:43.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:43.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:43.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:43.422][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2025-04-12 16:03:43.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:43.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:43.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:43.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:43.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:43.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:43.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:43.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:43.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:43.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:43.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:43.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:43.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:43.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:43.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:43.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:43.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:43.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:43.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:43.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:43.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:43.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:43.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:43.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:43.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:43.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:43.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:43.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:43.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:43.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:43.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:43.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:43.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:43.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:43.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:43.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:43.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:43.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:43.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:43.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:43.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:43.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:43.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:43.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:43.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:43.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:43.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:43.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:43.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:43.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:43.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:43.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:43.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:43.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:43.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:43.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:43.562][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2025-04-12 16:03:43.563][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:43.564][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168650".
biodb.TRACE[2025-04-12 16:03:43.565][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:43.566][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:43.567][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:43.568][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:43.569][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:43.570][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:43.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:43.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:43.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:43.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:43.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:43.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:43.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:43.582][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.DEBUG[2025-04-12 16:03:43.585][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:43.586][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:43.587][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.TRACE[2025-04-12 16:03:43.920][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650).
biodb.DEBUG[2025-04-12 16:03:44.254][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:44.256][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.content"
biodb.TRACE[2025-04-12 16:03:44.259][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.request"
biodb.TRACE[2025-04-12 16:03:44.262][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml"
biodb.DEBUG[2025-04-12 16:03:44.263][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:44.264][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:44.265][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:44.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:44.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:44.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:44.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:44.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:44.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:44.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:44.277][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.278][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.280][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.285][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:44.285][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:44.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.287][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.288][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:44.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:44.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.292][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:44.293][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:44.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.294][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:44.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:44.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.299][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:44.309][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:44.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.311][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:44.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:44.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.316][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.317][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.323][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:44.324][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:44.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.327][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:44.328][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.331][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:44.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.334][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:44.335][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:44.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.337][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:44.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:44.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.341][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:44.342][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:44.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:44.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:44.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.348][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:44.349][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:44.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.352][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:44.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:44.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.355][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:44.356][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:44.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:44.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:44.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:44.396][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2025-04-12 16:03:44.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:44.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:44.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:44.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:44.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:44.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:44.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:44.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:44.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:44.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:44.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:44.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:44.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:44.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:44.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:44.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:44.437][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2025-04-12 16:03:44.437][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:44.439][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169305".
biodb.TRACE[2025-04-12 16:03:44.440][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:44.441][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:44.442][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:44.442][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:44.443][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:44.444][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:44.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:44.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:44.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:44.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:44.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:44.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:44.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:44.456][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.DEBUG[2025-04-12 16:03:44.458][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:44.459][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:44.461][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.TRACE[2025-04-12 16:03:44.794][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305).
biodb.DEBUG[2025-04-12 16:03:45.167][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:45.170][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.content"
biodb.TRACE[2025-04-12 16:03:45.173][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.request"
biodb.TRACE[2025-04-12 16:03:45.175][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml"
biodb.DEBUG[2025-04-12 16:03:45.177][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:45.178][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:45.179][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:45.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:45.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:45.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:45.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:45.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:45.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:45.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:45.190][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.191][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.193][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.197][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:45.198][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:45.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.201][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:45.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:45.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.205][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:45.205][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:45.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:45.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:45.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.211][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:45.212][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:45.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.214][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:45.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:45.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.218][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.219][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.221][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.225][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:45.226][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:45.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.228][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.229][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:45.230][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.232][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:45.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.236][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.237][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.243][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:45.244][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:45.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.246][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:45.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:45.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.250][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:45.250][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:45.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.253][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:45.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:45.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.256][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:45.257][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:45.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.259][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:45.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:45.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:45.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:45.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:45.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:45.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:45.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:45.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:45.298][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2025-04-12 16:03:45.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:45.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:45.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:45.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:45.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:45.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:45.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:45.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:45.329][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2025-04-12 16:03:45.329][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:45.331][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176869".
biodb.TRACE[2025-04-12 16:03:45.332][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:45.333][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:45.334][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:45.335][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:45.335][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:45.336][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:45.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:45.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:45.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:45.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:45.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:45.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:45.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:45.348][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.DEBUG[2025-04-12 16:03:45.350][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:45.351][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:45.353][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.TRACE[2025-04-12 16:03:45.685][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869).
biodb.DEBUG[2025-04-12 16:03:46.026][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:46.028][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.content"
biodb.TRACE[2025-04-12 16:03:46.042][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.request"
biodb.TRACE[2025-04-12 16:03:46.056][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml"
biodb.DEBUG[2025-04-12 16:03:46.059][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:46.060][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:46.062][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:46.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:46.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:46.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:46.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:46.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:46.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:46.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:46.075][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:46.076][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:46.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.078][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:46.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:46.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.082][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:46.083][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:46.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.084][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.085][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:46.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:46.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.089][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:46.090][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:46.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.091][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.092][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:46.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:46.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.096][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:46.096][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:46.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:46.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:46.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.102][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:46.102][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:46.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:46.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:46.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.108][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:46.108][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:46.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.111][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:46.111][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:46.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.113][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.114][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:46.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:46.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.117][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:46.118][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:46.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:46.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:46.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.124][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:46.125][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:46.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:46.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:46.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.131][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:46.132][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:46.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.133][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.134][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:46.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:46.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.138][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:46.138][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:46.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.141][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:46.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:46.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:46.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:46.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:46.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:46.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:46.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:46.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:46.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:46.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:46.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:46.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:46.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:46.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:46.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:46.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:46.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:46.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:46.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:46.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:46.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:46.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:46.177][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2025-04-12 16:03:46.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:46.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:46.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:46.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:46.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:46.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:46.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:46.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:46.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:46.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:46.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:46.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:46.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:46.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:46.196][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2025-04-12 16:03:46.197][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:46.199][cch$loadFileContent] Trying to load 1 files from cache: [1]: "185696".
biodb.TRACE[2025-04-12 16:03:46.200][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:46.200][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:46.201][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:46.202][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:46.203][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:46.204][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:46.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:46.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:46.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:46.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:46.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:46.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:46.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:46.218][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.DEBUG[2025-04-12 16:03:46.221][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:46.222][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:46.223][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.TRACE[2025-04-12 16:03:46.560][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696).
biodb.DEBUG[2025-04-12 16:03:46.892][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:46.894][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.content"
biodb.TRACE[2025-04-12 16:03:46.897][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.request"
biodb.TRACE[2025-04-12 16:03:46.899][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml"
biodb.DEBUG[2025-04-12 16:03:46.901][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:46.902][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:46.903][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:46.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:46.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:46.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:46.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:46.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:46.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:46.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:46.915][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:46.916][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:46.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.918][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:46.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:46.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.922][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:46.923][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:46.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.925][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.926][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:46.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:46.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.930][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:46.931][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:46.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.932][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.933][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:46.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:46.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.937][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:46.938][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:46.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:46.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:46.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.944][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:46.945][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:46.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:46.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:46.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.951][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:46.951][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:46.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.953][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.954][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:46.955][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:46.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.957][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.958][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:46.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:46.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.961][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:46.962][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:46.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.964][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:46.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:46.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.968][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:46.969][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:46.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.971][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:46.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:46.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.975][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:46.988][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:46.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.991][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:46.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:46.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.995][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:46.996][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:46.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:46.998][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:46.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:47.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:47.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:47.035][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2025-04-12 16:03:47.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:47.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:47.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:47.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:47.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:47.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:47.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:47.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:47.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:47.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:47.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:47.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:47.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:47.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:47.055][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2025-04-12 16:03:47.056][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:47.057][cch$loadFileContent] Trying to load 1 files from cache: [1]: "190762".
biodb.TRACE[2025-04-12 16:03:47.058][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:47.059][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:47.060][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:47.061][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:47.062][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:47.062][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:47.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:47.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:47.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:47.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:47.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:47.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:47.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:47.074][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.DEBUG[2025-04-12 16:03:47.076][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:47.077][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:47.078][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.TRACE[2025-04-12 16:03:47.412][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762).
biodb.DEBUG[2025-04-12 16:03:47.750][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:47.752][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.content"
biodb.TRACE[2025-04-12 16:03:47.755][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.request"
biodb.TRACE[2025-04-12 16:03:47.757][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml"
biodb.DEBUG[2025-04-12 16:03:47.759][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:47.760][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:47.761][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:47.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:47.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:47.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:47.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:47.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:47.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:47.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:47.774][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.774][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.781][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:47.781][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:47.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.784][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:47.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:47.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.787][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:47.788][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:47.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.791][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:47.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:47.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.794][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:47.795][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:47.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:47.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:47.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.802][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:47.802][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:47.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:47.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:47.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.808][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:47.809][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:47.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.812][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:47.813][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:47.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.815][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:47.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:47.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.819][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:47.820][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:47.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:47.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:47.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.826][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:47.827][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:47.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:47.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:47.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.832][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:47.833][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:47.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.835][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.836][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:47.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:47.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.839][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:47.840][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:47.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.842][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.843][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:47.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:47.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:47.880][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2025-04-12 16:03:47.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:47.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:47.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:47.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:47.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:47.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:47.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:47.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:47.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:47.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:47.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:47.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:47.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:47.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:47.901][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2025-04-12 16:03:47.902][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:47.903][cch$loadFileContent] Trying to load 1 files from cache: [1]: "193176".
biodb.TRACE[2025-04-12 16:03:47.904][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:47.905][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:47.906][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:47.907][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:47.907][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:47.908][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:47.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:47.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:47.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:47.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:47.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:47.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:47.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:47.920][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.DEBUG[2025-04-12 16:03:47.923][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:47.923][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:47.925][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.TRACE[2025-04-12 16:03:48.258][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176).
biodb.DEBUG[2025-04-12 16:03:48.594][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:48.596][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.content"
biodb.TRACE[2025-04-12 16:03:48.599][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.request"
biodb.TRACE[2025-04-12 16:03:48.602][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml"
biodb.DEBUG[2025-04-12 16:03:48.603][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:48.604][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:48.605][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:48.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:48.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:48.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:48.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:48.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:48.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:48.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:48.617][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:48.618][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:48.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:48.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:48.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.636][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:48.637][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:48.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.639][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.640][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:48.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:48.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.644][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:48.644][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:48.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.646][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:48.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:48.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.651][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:48.652][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:48.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.653][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:48.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:48.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.658][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:48.659][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:48.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.660][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:48.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:48.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.665][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:48.666][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:48.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.667][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.668][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:48.669][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:48.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.672][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:48.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:48.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.675][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:48.676][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:48.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:48.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:48.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.682][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:48.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:48.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.685][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:48.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:48.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.689][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:48.690][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:48.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.692][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.693][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:48.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:48.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.696][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:48.697][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:48.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.698][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.699][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:48.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:48.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:48.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:48.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:48.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:48.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:48.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:48.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:48.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:48.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:48.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:48.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:48.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:48.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:48.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:48.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:48.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:48.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:48.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:48.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:48.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:48.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:48.736][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2025-04-12 16:03:48.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:48.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:48.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:48.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:48.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:48.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:48.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:48.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:48.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:48.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:48.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:48.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:48.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:48.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:48.757][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2025-04-12 16:03:48.758][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:48.759][cch$loadFileContent] Trying to load 1 files from cache: [1]: "196395".
biodb.TRACE[2025-04-12 16:03:48.760][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:48.761][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:48.762][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:48.763][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:48.764][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:48.765][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:48.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:48.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:48.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:48.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:48.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:48.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:48.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:48.776][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.DEBUG[2025-04-12 16:03:48.779][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:48.780][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:48.781][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.TRACE[2025-04-12 16:03:49.114][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395).
biodb.DEBUG[2025-04-12 16:03:49.448][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:49.450][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.content"
biodb.TRACE[2025-04-12 16:03:49.453][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.request"
biodb.TRACE[2025-04-12 16:03:49.456][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml"
biodb.DEBUG[2025-04-12 16:03:49.457][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:49.458][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:49.459][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:49.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:49.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:49.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:49.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:49.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:49.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:49.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:49.471][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:49.472][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:49.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:49.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:49.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.478][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:49.479][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:49.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.481][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.482][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:49.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:49.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.485][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:49.486][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:49.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.488][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.489][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:49.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:49.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.493][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:49.493][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:49.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.495][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:49.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:49.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.500][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:49.501][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:49.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:49.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:49.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.507][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:49.507][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:49.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.509][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.510][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:49.511][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.513][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:49.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.516][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:49.518][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:49.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.519][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:49.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:49.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.524][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:49.525][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:49.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:49.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:49.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.531][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:49.532][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:49.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.534][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:49.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:49.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.538][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:49.539][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:49.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.540][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:49.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:49.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:49.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:49.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:49.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:49.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:49.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:49.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:49.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:49.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:49.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:49.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:49.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:49.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:49.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:49.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:49.578][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2025-04-12 16:03:49.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:49.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:49.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:49.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:49.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:49.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:49.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:49.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:49.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:49.620][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:49.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:49.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:49.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:49.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:49.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:49.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:49.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:49.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.638][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.639][private$selectFields]
biodb.TRACE[2025-04-12 16:03:49.639][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:49.640][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:49.641][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.642][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.645][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.646][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.647][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.648][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.649][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.650][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.650][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.653][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:49.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.663][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:03:49.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:49.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:49.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:49.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:49.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:49.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:49.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:49.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.680][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.681][private$selectFields]
biodb.TRACE[2025-04-12 16:03:49.682][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:49.683][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:49.684][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.687][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.688][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.691][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.692][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.692][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.693][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.695][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.696][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:49.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.707][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-12 16:03:49.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:49.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:49.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:49.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:49.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:49.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:49.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:49.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.725][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.726][private$selectFields]
biodb.TRACE[2025-04-12 16:03:49.727][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:49.728][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:49.728][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.732][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.733][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.734][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.735][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.736][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.737][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.738][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.738][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.740][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.741][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:49.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.752][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-12 16:03:49.752][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:49.753][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:49.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:49.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:49.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:49.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:49.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:49.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:49.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:49.784][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:49.786][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:49.787][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ebf8c17fa19fb0caf99d83ca8441a2ac".
biodb.TRACE[2025-04-12 16:03:49.788][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:49.790][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content".
biodb.DEBUG[2025-04-12 16:03:49.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:49.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:49.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:49.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:49.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:49.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:49.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:49.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:49.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:49.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:49.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:49.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:49.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:49.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:49.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:49.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:49.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:49.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:49.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:49.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:49.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:49.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:49.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:49.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:49.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:49.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:49.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:49.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:49.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:49.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:49.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:49.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:49.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:49.870][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:49.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:49.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:49.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:49.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:49.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:49.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:49.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:49.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.887][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.888][private$selectFields]
biodb.TRACE[2025-04-12 16:03:49.889][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:49.889][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:49.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.897][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.898][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.900][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.901][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.902][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.904][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.904][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.905][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.906][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.907][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.908][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.909][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:49.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.920][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-12 16:03:49.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:49.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:49.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:49.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:49.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:49.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:49.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:49.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.937][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.937][private$selectFields]
biodb.TRACE[2025-04-12 16:03:49.938][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:49.939][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:49.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.940][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.941][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.947][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.947][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.948][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.949][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.951][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:49.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.962][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-04-12 16:03:49.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:49.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:49.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:49.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:49.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:49.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:49.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:49.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.977][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.978][private$selectFields]
biodb.TRACE[2025-04-12 16:03:49.979][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:49.979][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:49.980][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.982][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.985][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.987][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.987][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.988][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:49.989][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.990][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.992][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.992][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:49.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:49.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:49.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:49.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.003][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-04-12 16:03:50.004][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:50.005][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:50.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:50.018][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:50.020][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:50.021][cch$loadFileContent] Trying to load 1 files from cache: [1]: "152225e020c3e5947a0f5a90f021cee7".
biodb.TRACE[2025-04-12 16:03:50.023][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:50.024][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content".
biodb.DEBUG[2025-04-12 16:03:50.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.166][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:50.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.184][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.185][private$selectFields]
biodb.TRACE[2025-04-12 16:03:50.185][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:50.186][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:50.187][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.189][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.196][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.198][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.201][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.202][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.202][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.203][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.205][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.205][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:50.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.215][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-04-12 16:03:50.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.232][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.233][private$selectFields]
biodb.TRACE[2025-04-12 16:03:50.233][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:50.234][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:50.235][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.236][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.239][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.239][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.242][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.242][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.244][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.246][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:50.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.257][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-04-12 16:03:50.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.273][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.273][private$selectFields]
biodb.TRACE[2025-04-12 16:03:50.274][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:50.275][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:50.275][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.279][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.282][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.283][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.283][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.285][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.286][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.287][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:50.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.298][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-04-12 16:03:50.299][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:50.300][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:50.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:50.312][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:50.315][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:50.316][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9686ce9c957a368dd8f5b4cc9c5b15b3".
biodb.TRACE[2025-04-12 16:03:50.317][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:50.318][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content".
biodb.DEBUG[2025-04-12 16:03:50.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.358][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:50.360][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:50.361][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5d833e77a1be58060d0c3916a1e1b293".
biodb.TRACE[2025-04-12 16:03:50.362][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:50.363][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content".
biodb.DEBUG[2025-04-12 16:03:50.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.423][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:50.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.440][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.441][private$selectFields]
biodb.TRACE[2025-04-12 16:03:50.442][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:50.443][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:50.444][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.444][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.445][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.448][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.449][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.451][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.452][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.453][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.454][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.456][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:50.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.468][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-04-12 16:03:50.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.493][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.495][private$selectFields]
biodb.TRACE[2025-04-12 16:03:50.495][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:50.496][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:50.497][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.498][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.499][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.501][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.502][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.503][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.505][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.506][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.509][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.510][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:50.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.522][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-04-12 16:03:50.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.539][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.540][private$selectFields]
biodb.TRACE[2025-04-12 16:03:50.540][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:50.541][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:50.542][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.544][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.545][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.546][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.547][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.548][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.550][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.553][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.554][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:50.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.564][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-04-12 16:03:50.565][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:50.566][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:50.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:50.596][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:50.599][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:50.600][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-12 16:03:50.601][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:50.602][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-12 16:03:50.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.625][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:50.628][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:50.629][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-12 16:03:50.630][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:50.631][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-12 16:03:50.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.675][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:50.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.693][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.694][private$selectFields]
biodb.TRACE[2025-04-12 16:03:50.695][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:50.695][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:50.696][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.697][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.698][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.699][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.700][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.701][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.703][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.704][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.705][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.706][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.708][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:50.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.719][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-12 16:03:50.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.736][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.736][private$selectFields]
biodb.TRACE[2025-04-12 16:03:50.737][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:50.738][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:50.738][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.740][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.742][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.742][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.743][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.745][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.745][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.746][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.747][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.750][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:50.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.761][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:03:50.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.777][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.778][private$selectFields]
biodb.TRACE[2025-04-12 16:03:50.778][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:50.779][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:50.780][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.790][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.791][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.793][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.794][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.794][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.795][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.796][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.798][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.799][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:50.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.809][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-12 16:03:50.809][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:50.810][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:50.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:50.822][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:50.824][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:50.825][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-12 16:03:50.826][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:50.827][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-12 16:03:50.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.867][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:50.869][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:50.870][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-12 16:03:50.871][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:50.872][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-12 16:03:50.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.931][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:50.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.948][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.949][private$selectFields]
biodb.TRACE[2025-04-12 16:03:50.949][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:50.950][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:50.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.953][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.954][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.955][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.956][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.957][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.958][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.959][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.960][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.960][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.962][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.963][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:50.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.974][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:03:50.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:50.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.992][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.993][private$selectFields]
biodb.TRACE[2025-04-12 16:03:50.994][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:50.995][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:50.996][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:50.996][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:50.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.999][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.000][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.001][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.002][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.003][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.004][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.005][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.006][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.007][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.008][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:51.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.020][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-12 16:03:51.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.038][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.038][private$selectFields]
biodb.TRACE[2025-04-12 16:03:51.039][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:51.040][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:51.041][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.042][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.043][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.044][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.045][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.046][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.048][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.048][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.049][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.050][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.053][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:51.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.065][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-12 16:03:51.065][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:51.066][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:51.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:51.086][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:51.088][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:51.090][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-12 16:03:51.091][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:51.092][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-12 16:03:51.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.259][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:51.261][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:51.263][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-12 16:03:51.264][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:51.265][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-12 16:03:51.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.329][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:51.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.347][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.348][private$selectFields]
biodb.TRACE[2025-04-12 16:03:51.349][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:51.350][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:51.351][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.351][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.352][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.354][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.355][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.358][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.359][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.360][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.364][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:51.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.376][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:03:51.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.406][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.407][private$selectFields]
biodb.TRACE[2025-04-12 16:03:51.414][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:51.415][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:51.416][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.417][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.418][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.422][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.424][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.425][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.426][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.426][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.428][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.429][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:51.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.443][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-12 16:03:51.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.461][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.461][private$selectFields]
biodb.TRACE[2025-04-12 16:03:51.462][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:51.463][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:51.464][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.465][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.466][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.468][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.469][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.471][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.472][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.473][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.475][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.476][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:51.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.486][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-12 16:03:51.487][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:51.488][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:51.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:51.518][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:51.521][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:51.522][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2b6f29bb7a7663ff23fb5e7dcae5c27f".
biodb.TRACE[2025-04-12 16:03:51.523][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:51.524][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content".
biodb.DEBUG[2025-04-12 16:03:51.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.641][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:51.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.659][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.659][private$selectFields]
biodb.TRACE[2025-04-12 16:03:51.660][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:51.661][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:51.662][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.663][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.663][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.665][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.666][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.666][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.669][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.670][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.672][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.674][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:51.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.684][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:03:51.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.702][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.703][private$selectFields]
biodb.TRACE[2025-04-12 16:03:51.703][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:51.704][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:51.705][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.706][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.707][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.708][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.715][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.720][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.720][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.724][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:51.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.735][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-04-12 16:03:51.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.752][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.752][private$selectFields]
biodb.TRACE[2025-04-12 16:03:51.753][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:51.754][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:51.755][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.759][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.760][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.761][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.762][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.763][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.764][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.767][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:51.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.777][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-04-12 16:03:51.778][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:51.779][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:51.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:51.791][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:51.793][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:51.794][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a13652ab89a613a3b0e10d3b6cb10a0".
biodb.TRACE[2025-04-12 16:03:51.795][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:51.797][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content".
biodb.DEBUG[2025-04-12 16:03:51.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.858][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:51.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.876][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.877][private$selectFields]
biodb.TRACE[2025-04-12 16:03:51.878][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:51.879][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:51.879][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.881][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.882][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.883][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.884][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.885][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.887][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.887][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.888][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.889][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.890][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.892][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.892][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:51.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.903][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:03:51.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.921][private$selectFields]
biodb.TRACE[2025-04-12 16:03:51.922][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:51.923][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:51.924][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.927][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.930][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.932][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.935][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.936][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:51.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.947][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-12 16:03:51.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.964][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.965][private$selectFields]
biodb.TRACE[2025-04-12 16:03:51.965][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:51.966][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:51.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.969][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.970][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.971][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.971][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.974][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.975][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:51.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.978][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.979][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:51.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.990][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-12 16:03:51.990][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:51.991][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:51.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:52.011][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:52.013][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:52.015][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a985300ab8a01d49254fbf993ad91279".
biodb.TRACE[2025-04-12 16:03:52.016][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:52.017][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content".
biodb.DEBUG[2025-04-12 16:03:52.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.578][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:52.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.606][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:52.607][private$selectFields]
biodb.TRACE[2025-04-12 16:03:52.608][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:52.608][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:52.609][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:52.610][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.611][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.612][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.613][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.614][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.615][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.616][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:52.616][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:52.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.618][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.619][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.620][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:52.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.640][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:03:52.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.657][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:52.658][private$selectFields]
biodb.TRACE[2025-04-12 16:03:52.658][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:52.659][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:52.660][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:52.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.662][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.663][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.665][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.667][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:52.668][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:52.669][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.672][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:52.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.682][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-12 16:03:52.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.698][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:52.699][private$selectFields]
biodb.TRACE[2025-04-12 16:03:52.699][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:52.700][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:52.701][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:52.702][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.702][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.705][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.706][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.708][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:52.709][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:52.710][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.711][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.712][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.713][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:52.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.725][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-12 16:03:52.725][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:52.726][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-12 16:03:52.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:52.796][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:52.798][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:52.799][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:52.800][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:03:53.379][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:03:54.203][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:54.205][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content"
biodb.TRACE[2025-04-12 16:03:54.208][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.request"
biodb.DEBUG[2025-04-12 16:03:54.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:54.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:54.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:54.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:54.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:54.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:54.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:54.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:54.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:54.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:54.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:54.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:54.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:54.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:54.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:54.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:54.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:54.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:54.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:54.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:54.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:54.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:54.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:54.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:54.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:54.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:54.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:54.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:54.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:54.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:54.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:54.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:54.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:54.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:54.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:54.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:54.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:54.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:54.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:54.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:54.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:54.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:54.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:54.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:54.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:54.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:54.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:54.323][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2025-04-12 16:03:54.324][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:54.325][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9442".
biodb.TRACE[2025-04-12 16:03:54.326][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:54.327][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:54.328][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:54.328][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:54.329][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:54.330][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:54.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:54.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:54.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:54.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:54.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:54.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:54.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:54.341][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.DEBUG[2025-04-12 16:03:54.343][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:54.344][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:54.345][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.TRACE[2025-04-12 16:03:54.677][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442).
biodb.DEBUG[2025-04-12 16:03:55.022][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:55.024][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.content"
biodb.TRACE[2025-04-12 16:03:55.027][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.request"
biodb.TRACE[2025-04-12 16:03:55.029][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml"
biodb.DEBUG[2025-04-12 16:03:55.031][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:55.032][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:55.032][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:55.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:55.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:55.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:55.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:55.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:55.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:55.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:55.044][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:55.045][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:55.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.047][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:55.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:55.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.051][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:55.052][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:55.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.055][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:55.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:55.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.058][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:55.059][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:55.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:55.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:55.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.064][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:55.065][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:55.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:55.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:55.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.071][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:55.072][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:55.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:55.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:55.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.077][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:55.078][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:55.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.081][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:55.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:55.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.084][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:55.085][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:55.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.088][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:55.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:55.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.091][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:55.092][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:55.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.094][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:55.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:55.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.099][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:55.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:55.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:55.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:55.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.106][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:55.106][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:55.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.109][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:55.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:55.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.113][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:55.114][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:55.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.115][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:55.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:55.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:55.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:55.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:55.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:55.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:55.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:55.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:55.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:55.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:55.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:55.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:55.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:55.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:55.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:55.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:55.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:55.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:55.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:55.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:55.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:55.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:55.152][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2025-04-12 16:03:55.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:55.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:55.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:55.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:55.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:55.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:55.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:55.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:55.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:55.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:55.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:55.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:55.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:55.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:55.172][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2025-04-12 16:03:55.173][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:55.174][cch$loadFileContent] Trying to load 1 files from cache: [1]: "34764".
biodb.TRACE[2025-04-12 16:03:55.175][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:55.176][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:55.177][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:55.178][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:55.179][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:55.179][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:55.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:55.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:55.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:55.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:55.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:55.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:55.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:55.191][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.DEBUG[2025-04-12 16:03:55.193][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:55.194][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:55.195][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.TRACE[2025-04-12 16:03:55.528][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764).
biodb.DEBUG[2025-04-12 16:03:55.874][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:55.876][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.content"
biodb.TRACE[2025-04-12 16:03:55.879][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.request"
biodb.TRACE[2025-04-12 16:03:55.881][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml"
biodb.DEBUG[2025-04-12 16:03:55.882][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:55.883][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:55.884][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:55.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:55.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:55.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:55.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:55.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:55.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:55.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:55.897][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:55.898][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:55.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.900][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:55.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:55.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.904][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:55.905][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:55.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.908][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:55.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:55.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.912][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:55.912][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:55.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.916][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:55.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:55.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.919][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:55.920][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:55.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.921][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:55.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:55.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.925][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:55.926][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:55.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:55.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:55.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.932][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:55.933][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:55.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.935][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.936][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:55.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:55.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.940][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:55.941][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:55.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.942][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.943][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:55.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:55.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.947][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:55.948][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:55.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:55.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:55.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.954][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:55.955][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:55.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.957][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:55.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:55.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.992][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:55.993][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:55.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.995][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.996][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:55.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:55.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.999][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:56.000][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:56.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.002][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:56.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:56.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:56.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:56.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:56.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:56.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:56.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:56.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:56.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:56.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:56.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:56.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:56.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:56.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:56.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:56.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:56.038][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2025-04-12 16:03:56.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:56.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:56.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:56.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:56.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:56.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:56.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:56.049][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:56.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:56.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:56.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:56.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:56.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:56.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:56.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:56.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.066][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:56.067][private$selectFields]
biodb.TRACE[2025-04-12 16:03:56.067][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:56.068][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:56.069][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:56.070][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.072][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.073][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.074][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.075][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.076][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:56.077][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:56.078][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.079][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.081][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:56.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.092][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-12 16:03:56.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:56.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:56.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:56.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:56.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:56.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:56.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:56.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.109][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:56.110][private$selectFields]
biodb.TRACE[2025-04-12 16:03:56.111][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:56.112][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:56.112][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:56.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.117][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.117][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:56.121][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:56.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.123][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.125][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:56.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.137][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:03:56.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:56.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:56.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:56.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:56.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:56.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:56.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:56.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.155][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:56.156][private$selectFields]
biodb.TRACE[2025-04-12 16:03:56.156][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:56.157][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:56.158][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:56.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.159][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.164][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.164][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:56.165][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:56.166][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.168][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.169][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:56.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.181][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-04-12 16:03:56.182][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:56.183][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:56.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:56.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:56.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:56.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:56.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:56.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:56.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:56.195][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:56.198][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:56.199][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:56.200][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:03:56.540][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:03:57.201][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:57.203][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content"
biodb.TRACE[2025-04-12 16:03:57.207][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.request"
biodb.DEBUG[2025-04-12 16:03:57.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:57.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:57.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:57.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:57.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:57.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:57.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:57.223][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2025-04-12 16:03:57.224][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:57.225][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2535".
biodb.TRACE[2025-04-12 16:03:57.226][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:57.227][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:57.227][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:57.228][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:57.229][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:57.230][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:57.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:57.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:57.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:57.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:57.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:57.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:57.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:57.242][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.DEBUG[2025-04-12 16:03:57.245][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:57.246][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:57.247][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.TRACE[2025-04-12 16:03:57.580][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535).
biodb.DEBUG[2025-04-12 16:03:57.921][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:57.923][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.content"
biodb.TRACE[2025-04-12 16:03:57.926][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.request"
biodb.TRACE[2025-04-12 16:03:57.928][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml"
biodb.DEBUG[2025-04-12 16:03:57.930][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:57.931][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:57.932][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:57.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:57.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:57.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:57.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:57.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:57.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:57.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:57.944][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:57.944][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:57.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:57.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:57.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.961][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:57.962][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:57.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.963][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.964][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:57.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:57.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.967][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:57.968][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:57.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.969][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:57.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:57.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.974][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:57.975][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:57.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.976][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:57.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:57.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.980][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:57.981][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:57.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:57.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:57.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.987][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:57.988][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:57.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.989][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.990][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:57.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:57.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.993][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:57.994][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:57.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.995][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.996][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:57.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:57.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.999][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.000][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.001][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.005][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:58.006][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:58.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.007][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.008][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:58.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:58.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.011][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:58.012][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:58.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.015][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:58.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:58.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.018][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:58.018][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:58.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.021][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:58.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:58.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:58.054][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2025-04-12 16:03:58.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:58.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:58.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:58.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:58.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:58.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:58.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:58.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:58.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:58.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:58.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:58.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:58.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:58.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:58.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:58.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:58.092][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2025-04-12 16:03:58.093][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:58.094][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5525".
biodb.TRACE[2025-04-12 16:03:58.095][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:58.096][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:58.096][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:58.097][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:58.098][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:58.099][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:58.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:58.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:58.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:58.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:58.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:58.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:58.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:58.110][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.DEBUG[2025-04-12 16:03:58.112][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:58.113][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:58.114][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.TRACE[2025-04-12 16:03:58.448][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525).
biodb.DEBUG[2025-04-12 16:03:58.791][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:58.793][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.content"
biodb.TRACE[2025-04-12 16:03:58.796][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.request"
biodb.TRACE[2025-04-12 16:03:58.798][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml"
biodb.DEBUG[2025-04-12 16:03:58.799][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:58.800][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:58.801][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:58.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:58.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:58.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:58.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:58.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:58.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:58.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:58.813][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.814][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.820][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:58.821][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:58.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.824][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:58.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:58.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.827][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:58.828][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:58.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.831][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:58.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:58.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.834][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:58.835][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:58.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:58.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:58.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.841][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:58.842][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:58.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.844][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:58.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:58.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.849][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:58.849][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:58.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.852][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:58.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:58.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.855][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:58.856][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:58.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.858][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.859][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:58.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:58.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.862][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.863][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.869][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:58.870][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:58.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:58.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:58.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.876][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:58.877][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:58.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.879][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.880][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:58.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:58.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.883][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:58.884][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:58.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.887][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:58.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:58.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:58.932][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2025-04-12 16:03:58.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:58.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:58.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:58.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:58.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:58.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:58.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:58.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:58.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:58.961][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:03:58.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:58.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:58.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:58.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:58.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:58.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:58.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:58.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:58.979][private$selectFields]
biodb.TRACE[2025-04-12 16:03:58.980][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:58.981][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:58.981][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:58.982][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.983][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.985][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.986][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.987][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.988][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.989][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:58.990][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:58.991][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.992][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.993][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.994][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:58.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.005][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-04-12 16:03:59.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:59.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:59.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:59.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:59.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:59.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:59.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:59.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.023][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:59.023][private$selectFields]
biodb.TRACE[2025-04-12 16:03:59.024][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:59.025][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:59.026][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:59.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.029][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.031][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.033][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:59.034][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:59.035][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.038][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:59.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.049][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:03:59.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:59.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:59.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:59.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:59.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:59.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:59.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:59.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.066][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:59.067][private$selectFields]
biodb.TRACE[2025-04-12 16:03:59.067][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:03:59.068][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:03:59.069][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:59.070][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.072][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.073][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.073][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.075][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.076][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:59.077][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:03:59.078][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.079][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.081][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:03:59.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.092][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-12 16:03:59.093][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:03:59.094][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:03:59.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:59.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:59.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:59.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:59.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:59.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:59.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:59.106][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:59.109][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:59.110][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:59.111][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:03:59.450][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:03:59.783][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:59.785][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content"
biodb.TRACE[2025-04-12 16:03:59.788][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.request"
biodb.DEBUG[2025-04-12 16:03:59.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:59.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:59.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:59.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:59.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:59.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:59.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:59.800][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2025-04-12 16:03:59.801][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:59.802][cch$loadFileContent] Trying to load 1 files from cache: [1]: "31303".
biodb.TRACE[2025-04-12 16:03:59.804][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:59.805][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:59.806][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:59.806][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:59.807][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:59.808][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:59.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:59.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:59.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:59.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:59.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:59.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:59.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:59.820][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.DEBUG[2025-04-12 16:03:59.822][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:59.823][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:59.824][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.TRACE[2025-04-12 16:04:00.162][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303).
biodb.DEBUG[2025-04-12 16:04:00.504][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:00.506][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.content"
biodb.TRACE[2025-04-12 16:04:00.509][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.request"
biodb.TRACE[2025-04-12 16:04:00.511][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml"
biodb.DEBUG[2025-04-12 16:04:00.513][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:00.514][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:00.515][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:00.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:00.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:00.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:00.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:00.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:00.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:00.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:00.527][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:00.528][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:00.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:00.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:00.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.534][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:00.535][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:00.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.537][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:00.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:00.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.541][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:00.541][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:00.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.543][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.544][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:00.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:00.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.547][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:00.548][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:00.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.550][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:00.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:00.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.567][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:00.568][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:00.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.570][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:00.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:00.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.574][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:00.575][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:00.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.576][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.577][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:00.578][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:00.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.581][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:00.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:00.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.584][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:00.585][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:00.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:00.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:00.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.591][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:00.591][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:00.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.593][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.594][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:00.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:00.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.597][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:00.598][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:00.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.600][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.601][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:00.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:00.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.604][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:00.605][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:00.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.606][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:00.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:00.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:00.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:00.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:00.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:00.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:00.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:00.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:00.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:00.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:00.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:00.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:00.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:00.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:00.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:00.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:00.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:00.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:00.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:00.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:00.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:00.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:00.642][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2025-04-12 16:04:00.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:00.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:00.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:00.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:00.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:00.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:00.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:00.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:00.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:00.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:00.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:00.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:00.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:00.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:00.662][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2025-04-12 16:04:00.663][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:00.664][cch$loadFileContent] Trying to load 1 files from cache: [1]: "37118".
biodb.TRACE[2025-04-12 16:04:00.665][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:00.666][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:00.667][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:00.668][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:00.669][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:00.669][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:00.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:00.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:00.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:00.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:00.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:00.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:00.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:00.681][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.DEBUG[2025-04-12 16:04:00.683][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:00.684][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:00.685][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.TRACE[2025-04-12 16:04:01.017][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118).
biodb.DEBUG[2025-04-12 16:04:01.353][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:01.366][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.content"
biodb.TRACE[2025-04-12 16:04:01.370][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.request"
biodb.TRACE[2025-04-12 16:04:01.372][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml"
biodb.DEBUG[2025-04-12 16:04:01.373][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:01.374][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:01.375][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:01.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:01.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:01.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:01.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:01.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:01.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:01.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:01.388][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:01.389][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:01.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.390][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:01.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:01.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.395][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:01.396][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:01.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.398][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:01.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:01.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.401][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:01.402][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:01.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:01.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:01.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.408][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:01.408][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:01.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:01.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:01.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.414][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:01.415][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:01.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:01.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:01.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.420][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:01.421][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:01.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.422][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.423][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:01.424][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:01.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.426][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:01.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:01.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.429][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:01.430][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:01.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.432][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:01.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:01.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.436][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:01.437][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:01.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.440][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:01.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:01.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.443][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:01.444][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:01.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.446][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:01.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:01.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.449][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:01.450][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:01.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.452][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.453][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:01.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:01.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:01.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:01.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:01.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:01.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:01.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:01.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:01.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:01.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:01.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:01.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:01.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:01.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:01.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:01.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:01.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:01.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:01.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:01.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:01.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:01.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:01.487][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2025-04-12 16:04:01.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:01.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:01.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:01.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:01.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:01.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:01.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:01.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:01.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:01.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:01.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:01.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:01.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:01.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:01.506][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2025-04-12 16:04:01.507][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:01.509][cch$loadFileContent] Trying to load 1 files from cache: [1]: "39424".
biodb.TRACE[2025-04-12 16:04:01.510][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:01.511][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:01.511][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:01.512][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:01.513][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:01.514][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:01.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:01.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:01.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:01.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:01.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:01.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:01.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:01.534][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.DEBUG[2025-04-12 16:04:01.536][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:01.537][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:01.538][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.TRACE[2025-04-12 16:04:01.872][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424).
biodb.DEBUG[2025-04-12 16:04:02.206][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:02.208][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.content"
biodb.TRACE[2025-04-12 16:04:02.211][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.request"
biodb.TRACE[2025-04-12 16:04:02.213][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml"
biodb.DEBUG[2025-04-12 16:04:02.214][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:02.215][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:02.216][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:02.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:02.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:02.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:02.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:02.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:02.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:02.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:02.228][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:02.229][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:02.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:02.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:02.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.234][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:02.235][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:02.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.238][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:02.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:02.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.241][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:02.242][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:02.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.244][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:02.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:02.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.247][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:02.248][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:02.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.250][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:02.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:02.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.254][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:02.255][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:02.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.257][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:02.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:02.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.261][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:02.262][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:02.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.264][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:02.265][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:02.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.268][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:02.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:02.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.271][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:02.272][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:02.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.274][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:02.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:02.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.278][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:02.279][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:02.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.282][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:02.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:02.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.285][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:02.286][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:02.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.289][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:02.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:02.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.292][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:02.293][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:02.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.294][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.295][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:02.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:02.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:02.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:02.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:02.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:02.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:02.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:02.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:02.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:02.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:02.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:02.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:02.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:02.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:02.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:02.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:02.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:02.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:02.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:02.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:02.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:02.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:02.331][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2025-04-12 16:04:02.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:02.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:02.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:02.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:02.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:02.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:02.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:02.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:02.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:02.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:02.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:02.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:02.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:02.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:02.352][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2025-04-12 16:04:02.353][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:02.354][cch$loadFileContent] Trying to load 1 files from cache: [1]: "81767".
biodb.TRACE[2025-04-12 16:04:02.355][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:02.356][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:02.357][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:02.358][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:02.359][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:02.360][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:02.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:02.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:02.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:02.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:02.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:02.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:02.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:02.372][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.DEBUG[2025-04-12 16:04:02.374][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:02.375][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:02.376][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.TRACE[2025-04-12 16:04:02.709][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767).
biodb.DEBUG[2025-04-12 16:04:03.057][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:03.058][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.content"
biodb.TRACE[2025-04-12 16:04:03.061][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.request"
biodb.TRACE[2025-04-12 16:04:03.064][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml"
biodb.DEBUG[2025-04-12 16:04:03.065][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:03.066][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:03.067][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:03.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.079][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.080][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.082][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.087][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:03.088][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:03.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.090][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.091][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:03.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:03.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.094][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:03.095][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:03.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.097][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.098][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:03.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:03.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.102][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:03.102][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:03.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:03.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:03.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.109][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:03.109][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:03.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:03.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:03.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.115][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:03.116][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:03.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.118][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.119][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:03.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:03.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.122][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:03.123][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:03.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.125][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:03.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:03.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.129][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.130][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.135][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:03.137][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:03.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.140][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:03.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:03.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.143][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:03.144][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:03.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.146][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.147][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:03.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:03.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.150][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:03.151][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:03.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.153][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.154][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:03.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:03.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:03.202][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2025-04-12 16:04:03.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:03.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:03.233][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:03.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.251][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.252][private$selectFields]
biodb.TRACE[2025-04-12 16:04:03.253][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:03.254][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:03.254][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.255][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.259][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.260][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.261][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.262][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.263][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.267][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:03.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.279][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-04-12 16:04:03.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.297][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.297][private$selectFields]
biodb.TRACE[2025-04-12 16:04:03.298][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:03.299][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:03.300][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.301][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.302][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.303][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.304][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.305][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.306][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.307][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.308][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.312][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:03.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.323][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-04-12 16:04:03.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.340][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.341][private$selectFields]
biodb.TRACE[2025-04-12 16:04:03.342][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:03.342][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:03.343][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.344][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.345][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.347][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.348][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.350][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.351][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.352][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.353][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.354][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.355][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:03.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.366][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-04-12 16:04:03.366][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:03.367][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:03.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:03.398][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:03.401][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:03.402][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-12 16:04:03.403][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:03.404][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-12 16:04:03.406][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:03.409][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:03.410][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-12 16:04:03.411][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:03.412][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-12 16:04:03.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:03.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:03.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:03.480][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:03.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.498][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.498][private$selectFields]
biodb.TRACE[2025-04-12 16:04:03.499][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:03.500][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:03.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.502][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.503][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.505][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.506][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.506][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.508][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.509][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.510][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.511][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.513][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:03.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.536][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-12 16:04:03.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.555][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.556][private$selectFields]
biodb.TRACE[2025-04-12 16:04:03.556][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:03.557][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:03.558][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.559][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.561][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.563][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.565][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.565][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.566][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.568][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.570][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:03.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.581][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:04:03.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.598][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.598][private$selectFields]
biodb.TRACE[2025-04-12 16:04:03.599][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:03.600][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:03.601][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.602][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.604][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.605][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.606][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.608][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.609][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.610][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.611][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.613][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.614][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:03.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.625][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-12 16:04:03.626][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:03.627][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:03.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:03.640][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:03.642][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:03.643][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-12 16:04:03.644][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:03.645][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-12 16:04:03.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:03.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:03.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:03.708][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:03.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.726][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.726][private$selectFields]
biodb.TRACE[2025-04-12 16:04:03.727][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:03.728][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:03.729][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.732][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.733][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.734][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.735][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.736][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.737][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.738][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.738][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.740][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.741][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:03.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.752][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:04:03.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.770][private$selectFields]
biodb.TRACE[2025-04-12 16:04:03.770][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:03.771][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:03.772][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.773][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.774][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.781][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.782][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.784][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.786][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.787][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.791][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:03.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.803][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-12 16:04:03.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.820][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.820][private$selectFields]
biodb.TRACE[2025-04-12 16:04:03.821][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:03.822][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:03.822][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.827][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.827][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.830][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.831][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.832][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.832][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.835][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:03.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.846][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-12 16:04:03.847][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:03.848][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:03.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:03.861][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:03.863][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:03.865][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-12 16:04:03.866][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:03.867][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-12 16:04:03.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:03.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:03.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:03.929][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:03.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.946][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.947][private$selectFields]
biodb.TRACE[2025-04-12 16:04:03.948][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:03.949][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:03.950][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.951][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.953][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.956][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.957][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.958][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.959][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.959][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.961][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.962][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:03.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.974][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-12 16:04:03.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.991][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.992][private$selectFields]
biodb.TRACE[2025-04-12 16:04:03.993][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:03.994][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:03.994][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:03.995][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.998][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.001][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.002][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:04.002][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:04.003][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.004][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.006][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.007][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:04.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.018][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-12 16:04:04.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:04.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:04.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:04.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:04.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:04.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:04.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:04.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.035][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:04.036][private$selectFields]
biodb.TRACE[2025-04-12 16:04:04.037][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:04.038][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:04.039][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:04.040][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.041][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.042][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.046][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.046][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:04.047][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:04.048][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.049][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.051][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:04.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.062][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-04-12 16:04:04.062][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:04.063][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:04.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:04.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:04.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:04.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:04.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:04.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:04.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:04.102][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:04.105][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:04.106][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:04.107][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:04:04.449][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:04:04.790][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:04.792][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content"
biodb.TRACE[2025-04-12 16:04:04.795][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.request"
biodb.DEBUG[2025-04-12 16:04:04.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:04.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:04.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:04.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:04.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:04.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:04.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:04.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:04.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:04.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:04.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:04.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:04.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:04.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:04.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:04.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:04.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:04.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:04.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:04.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:04.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:04.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:04.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:04.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:04.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:04.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:04.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:04.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:04.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:04.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:04.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:04.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:04.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:04.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:04.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:04.843][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2025-04-12 16:04:04.844][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:04.845][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17813".
biodb.TRACE[2025-04-12 16:04:04.846][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:04.847][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:04.848][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:04.849][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:04.849][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:04.850][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:04.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:04.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:04.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:04.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:04.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:04.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:04.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:04.862][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.DEBUG[2025-04-12 16:04:04.864][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:04.864][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:04.865][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.TRACE[2025-04-12 16:04:05.198][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813).
biodb.DEBUG[2025-04-12 16:04:05.538][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:05.540][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.content"
biodb.TRACE[2025-04-12 16:04:05.543][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.request"
biodb.TRACE[2025-04-12 16:04:05.546][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml"
biodb.DEBUG[2025-04-12 16:04:05.547][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:05.548][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:05.549][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:05.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:05.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:05.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:05.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:05.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:05.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:05.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:05.560][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:05.561][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:05.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:05.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:05.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.567][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:05.568][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:05.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.570][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:05.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:05.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.574][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:05.574][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:05.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.576][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.577][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:05.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:05.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.580][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:05.581][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:05.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:05.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:05.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.587][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:05.588][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:05.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:05.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:05.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.594][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:05.595][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:05.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.596][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.597][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:05.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:05.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.601][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:05.602][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:05.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.603][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.604][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:05.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:05.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.607][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:05.608][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:05.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:05.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:05.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.614][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:05.615][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:05.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:05.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:05.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.621][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:05.622][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:05.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.623][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.624][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:05.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:05.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.628][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:05.629][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:05.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:05.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:05.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:05.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:05.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:05.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:05.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:05.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:05.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:05.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:05.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:05.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:05.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:05.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:05.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:05.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:05.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:05.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:05.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:05.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:05.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:05.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:05.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:05.667][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2025-04-12 16:04:05.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:05.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:05.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:05.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:05.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:05.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:05.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:05.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:05.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:05.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:05.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:05.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:05.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:05.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:05.687][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2025-04-12 16:04:05.688][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:05.689][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30109".
biodb.TRACE[2025-04-12 16:04:05.690][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:05.691][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:05.692][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:05.693][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:05.693][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:05.694][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:05.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:05.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:05.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:05.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:05.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:05.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:05.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:05.707][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.DEBUG[2025-04-12 16:04:05.709][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:05.710][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:05.711][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.TRACE[2025-04-12 16:04:06.050][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109).
biodb.DEBUG[2025-04-12 16:04:06.401][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:06.403][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.content"
biodb.TRACE[2025-04-12 16:04:06.420][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.request"
biodb.TRACE[2025-04-12 16:04:06.422][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml"
biodb.DEBUG[2025-04-12 16:04:06.424][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:06.425][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:06.426][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:06.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:06.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:06.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:06.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:06.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:06.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:06.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:06.439][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:06.440][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:06.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:06.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:06.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.447][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:06.447][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:06.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.449][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.450][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:06.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:06.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.454][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:06.455][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:06.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.457][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:06.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:06.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.461][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:06.461][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:06.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.463][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:06.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:06.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.467][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:06.468][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:06.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:06.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:06.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.474][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:06.474][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:06.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.477][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:06.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:06.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.480][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:06.481][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:06.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.484][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:06.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:06.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.487][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:06.487][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:06.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:06.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:06.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.493][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:06.494][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:06.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.497][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:06.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:06.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.500][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:06.502][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:06.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.503][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.504][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:06.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:06.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.508][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:06.509][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:06.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.510][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.511][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:06.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:06.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:06.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:06.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:06.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:06.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:06.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:06.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:06.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:06.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:06.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:06.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:06.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:06.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:06.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:06.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:06.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:06.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:06.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:06.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:06.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:06.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:06.547][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2025-04-12 16:04:06.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:06.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:06.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:06.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:06.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:06.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:06.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:06.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:06.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:06.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:06.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:06.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:06.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:06.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:06.567][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2025-04-12 16:04:06.568][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:06.569][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33275".
biodb.TRACE[2025-04-12 16:04:06.571][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:06.572][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:06.573][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:06.573][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:06.574][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:06.575][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:06.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:06.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:06.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:06.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:06.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:06.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:06.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:06.587][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.DEBUG[2025-04-12 16:04:06.589][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:06.590][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:06.591][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.TRACE[2025-04-12 16:04:06.924][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275).
biodb.DEBUG[2025-04-12 16:04:07.269][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:07.271][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.content"
biodb.TRACE[2025-04-12 16:04:07.274][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.request"
biodb.TRACE[2025-04-12 16:04:07.276][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml"
biodb.DEBUG[2025-04-12 16:04:07.277][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:07.278][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:07.279][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:07.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:07.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:07.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:07.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:07.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:07.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:07.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:07.302][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:07.303][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:07.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.304][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:07.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:07.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.311][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:07.312][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:07.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.314][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.315][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:07.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:07.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.318][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:07.319][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:07.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.321][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:07.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:07.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.325][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:07.326][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:07.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.327][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:07.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:07.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.331][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:07.332][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:07.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.334][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:07.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:07.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.338][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:07.339][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:07.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.340][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.341][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:07.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:07.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.345][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:07.345][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:07.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.348][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:07.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:07.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.351][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:07.352][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:07.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.353][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:07.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:07.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.358][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:07.359][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:07.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.360][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:07.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:07.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.365][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:07.365][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:07.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.368][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:07.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:07.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.371][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:07.372][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:07.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.375][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:07.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:07.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:07.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:07.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:07.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:07.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:07.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:07.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:07.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:07.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:07.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:07.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:07.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:07.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:07.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:07.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:07.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:07.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:07.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:07.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:07.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:07.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:07.420][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2025-04-12 16:04:07.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:07.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:07.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:07.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:07.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:07.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:07.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:07.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:07.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:07.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:07.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:07.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:07.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:07.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:07.439][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2025-04-12 16:04:07.440][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:07.441][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33277".
biodb.TRACE[2025-04-12 16:04:07.442][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:07.443][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:07.444][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:07.445][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:07.446][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:07.447][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:07.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:07.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:07.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:07.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:07.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:07.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:07.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:07.458][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.DEBUG[2025-04-12 16:04:07.460][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:07.461][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:07.462][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.TRACE[2025-04-12 16:04:07.794][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277).
biodb.DEBUG[2025-04-12 16:04:08.138][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:08.140][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.content"
biodb.TRACE[2025-04-12 16:04:08.143][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.request"
biodb.TRACE[2025-04-12 16:04:08.145][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml"
biodb.DEBUG[2025-04-12 16:04:08.146][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:08.147][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:08.148][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:08.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:08.160][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:08.160][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:08.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:08.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:08.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.166][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:08.167][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:08.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.168][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.169][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:08.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:08.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.172][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:08.173][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:08.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.175][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:08.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:08.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.179][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:08.179][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:08.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:08.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:08.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.185][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:08.185][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:08.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:08.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:08.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.191][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:08.192][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:08.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.193][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.194][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:08.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:08.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.197][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:08.198][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.201][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:08.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.204][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.205][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.210][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:08.211][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:08.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.212][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:08.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:08.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.216][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:08.217][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:08.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.219][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.220][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:08.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:08.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.223][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:08.224][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:08.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.227][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:08.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:08.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:08.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:08.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:08.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:08.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:08.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:08.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:08.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:08.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:08.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:08.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:08.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:08.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:08.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:08.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:08.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:08.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:08.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:08.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:08.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:08.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.261][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2025-04-12 16:04:08.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:08.280][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2025-04-12 16:04:08.281][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:08.282][cch$loadFileContent] Trying to load 1 files from cache: [1]: "52421".
biodb.TRACE[2025-04-12 16:04:08.283][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:08.284][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:08.285][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:08.286][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:08.287][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:08.288][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:08.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:08.298][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.DEBUG[2025-04-12 16:04:08.301][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:08.301][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:08.302][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.TRACE[2025-04-12 16:04:08.654][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421).
biodb.DEBUG[2025-04-12 16:04:08.991][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:08.993][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.content"
biodb.TRACE[2025-04-12 16:04:08.996][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.request"
biodb.TRACE[2025-04-12 16:04:08.999][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml"
biodb.DEBUG[2025-04-12 16:04:09.000][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:09.001][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:09.002][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:09.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:09.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:09.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:09.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:09.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:09.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:09.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:09.014][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:09.015][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:09.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:09.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:09.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.020][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:09.021][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:09.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.023][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.024][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:09.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:09.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.027][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:09.028][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:09.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.030][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:09.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:09.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.034][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:09.035][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:09.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.049][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:09.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:09.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.053][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:09.054][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:09.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.056][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:09.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:09.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.060][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:09.061][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:09.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.063][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:09.064][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:09.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.066][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:09.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:09.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.070][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:09.070][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:09.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.072][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:09.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:09.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.076][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:09.077][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:09.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:09.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:09.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.084][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:09.085][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:09.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.087][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:09.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:09.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.091][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:09.092][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:09.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:09.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:09.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:09.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:09.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:09.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:09.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:09.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:09.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:09.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:09.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:09.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:09.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:09.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:09.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:09.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:09.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:09.129][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2025-04-12 16:04:09.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:09.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:09.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:09.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:09.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:09.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:09.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:09.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:09.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:09.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:09.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:09.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:09.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:09.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:09.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:09.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:09.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:09.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:09.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:09.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:09.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:09.160][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:09.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:09.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:09.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:09.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:09.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:09.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:09.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:09.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.177][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:09.178][private$selectFields]
biodb.TRACE[2025-04-12 16:04:09.179][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:09.180][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:09.181][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:09.181][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.182][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.186][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.188][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:09.189][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:09.190][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.191][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.192][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.193][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:09.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.204][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-12 16:04:09.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:09.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:09.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:09.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:09.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:09.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:09.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:09.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.221][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:09.223][private$selectFields]
biodb.TRACE[2025-04-12 16:04:09.223][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:09.224][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:09.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:09.226][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.226][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.228][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.229][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.230][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.232][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:09.233][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:09.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.235][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.237][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:09.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.248][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:04:09.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:09.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:09.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:09.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:09.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:09.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:09.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:09.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:09.266][private$selectFields]
biodb.TRACE[2025-04-12 16:04:09.267][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:09.268][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:09.268][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:09.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.274][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.277][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.277][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:09.278][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:09.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.282][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:09.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:09.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:09.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:09.293][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-12 16:04:09.294][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:09.294][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:09.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:09.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:09.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:09.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:09.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:09.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:09.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:09.307][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:09.309][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:09.310][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:09.312][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:04:09.648][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:04:10.319][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:10.321][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content"
biodb.TRACE[2025-04-12 16:04:10.325][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.request"
biodb.DEBUG[2025-04-12 16:04:10.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:10.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:10.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:10.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:10.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:10.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:10.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:10.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:10.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:10.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:10.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:10.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:10.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:10.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:10.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:10.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:10.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:10.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:10.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:10.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:10.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:10.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:10.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:10.390][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2025-04-12 16:04:10.391][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:10.393][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65567".
biodb.TRACE[2025-04-12 16:04:10.394][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:10.395][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:10.396][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:10.396][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:10.397][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:10.398][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:10.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:10.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:10.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:10.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:10.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:10.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:10.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:10.410][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.DEBUG[2025-04-12 16:04:10.412][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:10.413][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:10.414][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.TRACE[2025-04-12 16:04:10.751][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567).
biodb.DEBUG[2025-04-12 16:04:11.093][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:11.095][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.content"
biodb.TRACE[2025-04-12 16:04:11.098][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.request"
biodb.TRACE[2025-04-12 16:04:11.100][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml"
biodb.DEBUG[2025-04-12 16:04:11.102][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:11.103][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:11.104][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:11.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:11.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:11.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:11.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:11.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:11.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:11.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:11.116][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:11.117][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:11.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.118][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:11.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:11.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.123][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:11.123][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:11.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.126][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:11.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:11.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.129][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:11.130][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:11.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.133][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:11.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:11.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.136][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:11.137][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:11.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.139][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:11.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:11.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.143][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:11.144][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:11.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:11.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:11.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.150][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:11.151][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:11.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.153][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:11.154][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:11.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.156][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.157][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:11.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:11.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.160][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.160][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.167][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:11.168][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:11.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:11.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:11.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.173][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:11.174][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:11.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.175][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.177][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:11.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:11.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.180][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:11.181][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:11.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.183][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:11.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:11.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:11.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:11.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:11.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:11.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:11.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:11.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:11.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:11.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:11.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:11.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:11.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:11.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:11.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:11.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:11.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:11.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:11.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:11.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:11.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:11.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:11.232][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2025-04-12 16:04:11.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:11.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:11.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:11.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:11.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:11.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:11.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:11.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:11.252][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2025-04-12 16:04:11.253][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:11.254][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65576".
biodb.TRACE[2025-04-12 16:04:11.255][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:11.256][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:11.257][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:11.258][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:11.259][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:11.260][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:11.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:11.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:11.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:11.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:11.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:11.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:11.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:11.271][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.DEBUG[2025-04-12 16:04:11.273][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:11.274][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:11.275][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.TRACE[2025-04-12 16:04:11.609][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576).
biodb.DEBUG[2025-04-12 16:04:11.948][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:11.950][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.content"
biodb.TRACE[2025-04-12 16:04:11.954][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.request"
biodb.TRACE[2025-04-12 16:04:11.956][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml"
biodb.DEBUG[2025-04-12 16:04:11.957][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:11.958][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:11.959][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:11.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:11.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:11.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:11.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:11.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:11.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:11.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:11.971][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:11.971][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:11.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:11.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:11.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.977][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:11.977][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:11.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.979][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.980][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:11.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:11.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.984][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:11.984][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:11.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.986][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.987][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:11.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:11.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.990][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:12.002][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:12.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.004][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:12.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:12.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.008][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:12.009][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:12.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.010][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:12.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:12.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.014][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:12.015][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:12.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.017][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:12.018][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:12.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.019][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.020][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:12.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:12.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.023][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.024][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.025][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.029][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:12.030][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:12.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.031][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:12.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:12.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.035][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:12.036][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:12.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.038][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.039][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:12.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:12.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.042][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:12.043][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:12.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.044][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:12.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:12.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:12.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:12.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:12.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:12.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:12.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:12.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:12.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:12.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:12.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:12.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:12.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:12.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:12.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:12.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:12.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:12.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:12.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:12.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:12.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:12.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.080][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2025-04-12 16:04:12.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:12.099][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2025-04-12 16:04:12.100][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:12.101][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66352".
biodb.TRACE[2025-04-12 16:04:12.103][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:12.103][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:12.104][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:12.105][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:12.106][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:12.107][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:12.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:12.118][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.DEBUG[2025-04-12 16:04:12.120][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:12.121][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:12.122][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.TRACE[2025-04-12 16:04:12.457][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352).
biodb.DEBUG[2025-04-12 16:04:12.796][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:12.799][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.content"
biodb.TRACE[2025-04-12 16:04:12.802][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.request"
biodb.TRACE[2025-04-12 16:04:12.805][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml"
biodb.DEBUG[2025-04-12 16:04:12.806][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:12.807][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:12.808][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:12.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.821][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:12.822][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:12.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.824][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:12.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:12.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.828][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:12.829][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:12.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.832][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:12.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:12.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.835][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:12.836][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:12.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.838][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.839][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:12.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:12.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.843][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:12.844][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:12.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.845][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:12.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:12.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.850][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:12.851][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:12.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:12.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:12.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.857][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:12.858][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:12.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.860][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:12.861][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:12.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.864][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:12.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:12.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.867][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.868][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.870][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.874][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:12.875][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:12.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.877][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:12.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:12.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.881][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:12.882][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:12.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.884][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.885][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:12.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:12.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.889][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:12.890][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:12.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:12.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:12.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:12.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:12.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:12.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:12.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:12.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:12.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:12.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:12.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:12.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:12.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:12.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:12.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:12.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:12.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:12.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:12.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:12.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:12.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:12.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:12.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.943][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2025-04-12 16:04:12.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:12.968][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2025-04-12 16:04:12.968][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:12.970][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67567".
biodb.TRACE[2025-04-12 16:04:12.971][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:12.981][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:12.982][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:12.983][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:12.984][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:12.985][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:12.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:12.997][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.DEBUG[2025-04-12 16:04:12.999][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:13.000][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:13.001][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.TRACE[2025-04-12 16:04:13.333][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567).
biodb.DEBUG[2025-04-12 16:04:13.671][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:13.673][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.content"
biodb.TRACE[2025-04-12 16:04:13.676][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.request"
biodb.TRACE[2025-04-12 16:04:13.678][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml"
biodb.DEBUG[2025-04-12 16:04:13.680][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:13.681][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:13.682][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:13.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:13.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:13.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:13.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:13.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:13.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:13.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:13.703][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:13.704][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:13.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:13.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:13.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.710][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:13.710][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:13.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.712][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.714][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:13.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:13.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.720][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:13.721][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:13.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.722][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:13.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:13.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.727][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:13.728][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:13.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.729][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:13.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:13.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.734][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:13.734][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:13.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:13.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:13.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.740][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:13.741][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:13.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.744][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:13.745][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.747][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:13.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.751][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.752][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.758][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:13.759][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:13.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.760][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:13.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:13.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.765][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:13.766][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:13.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.767][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.768][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:13.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:13.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.772][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:13.773][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:13.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.775][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:13.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:13.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:13.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:13.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:13.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:13.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:13.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:13.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:13.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:13.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:13.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:13.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:13.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:13.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:13.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:13.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:13.811][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2025-04-12 16:04:13.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:13.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:13.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:13.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:13.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:13.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:13.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:13.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:13.831][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2025-04-12 16:04:13.832][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:13.834][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67693".
biodb.TRACE[2025-04-12 16:04:13.835][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:13.836][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:13.836][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:13.837][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:13.838][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:13.839][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:13.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:13.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:13.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:13.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:13.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:13.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:13.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:13.851][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.DEBUG[2025-04-12 16:04:13.853][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:13.854][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:13.855][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.TRACE[2025-04-12 16:04:14.187][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693).
biodb.DEBUG[2025-04-12 16:04:14.534][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:14.536][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.content"
biodb.TRACE[2025-04-12 16:04:14.539][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.request"
biodb.TRACE[2025-04-12 16:04:14.541][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml"
biodb.DEBUG[2025-04-12 16:04:14.543][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:14.544][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:14.545][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:14.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:14.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:14.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:14.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:14.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:14.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:14.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:14.557][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:14.558][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:14.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:14.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:14.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.563][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:14.564][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:14.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.566][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.567][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:14.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:14.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.570][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:14.571][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:14.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:14.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:14.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.577][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:14.578][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:14.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:14.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:14.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.584][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:14.584][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:14.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:14.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:14.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.590][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:14.591][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:14.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.593][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.594][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:14.594][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:14.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.596][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.597][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:14.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:14.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.600][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:14.601][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:14.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.602][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:14.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:14.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.607][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:14.608][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:14.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.610][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:14.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:14.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.614][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:14.615][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:14.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.617][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:14.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:14.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.621][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:14.628][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:14.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.635][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:14.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:14.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:14.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:14.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:14.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:14.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:14.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:14.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:14.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:14.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:14.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:14.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:14.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:14.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:14.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:14.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:14.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:14.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:14.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:14.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:14.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:14.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:14.672][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2025-04-12 16:04:14.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:14.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:14.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:14.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:14.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:14.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:14.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:14.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:14.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:14.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:14.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:14.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:14.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:14.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:14.691][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2025-04-12 16:04:14.692][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:14.693][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67700".
biodb.TRACE[2025-04-12 16:04:14.694][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:14.695][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:14.696][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:14.697][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:14.697][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:14.698][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:14.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:14.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:14.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:14.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:14.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:14.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:14.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:14.709][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.DEBUG[2025-04-12 16:04:14.711][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:14.712][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:14.713][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.TRACE[2025-04-12 16:04:15.044][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700).
biodb.DEBUG[2025-04-12 16:04:15.382][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:15.384][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.content"
biodb.TRACE[2025-04-12 16:04:15.387][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.request"
biodb.TRACE[2025-04-12 16:04:15.389][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml"
biodb.DEBUG[2025-04-12 16:04:15.390][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:15.391][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:15.392][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:15.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:15.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:15.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:15.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:15.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:15.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:15.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:15.404][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:15.404][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:15.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:15.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:15.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.410][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:15.411][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:15.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.413][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:15.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:15.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.416][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:15.417][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:15.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:15.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:15.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.422][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:15.423][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:15.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:15.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:15.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.429][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:15.430][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:15.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.431][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:15.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:15.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.435][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:15.436][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:15.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.439][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:15.439][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:15.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.442][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:15.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:15.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.445][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:15.446][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:15.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:15.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:15.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.451][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:15.452][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:15.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:15.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:15.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.458][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:15.459][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:15.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.461][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:15.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:15.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.464][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:15.465][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:15.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.466][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.467][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:15.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:15.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:15.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:15.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:15.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:15.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:15.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:15.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:15.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:15.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:15.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:15.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:15.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:15.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:15.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:15.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:15.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:15.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:15.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:15.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:15.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:15.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:15.501][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2025-04-12 16:04:15.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:15.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:15.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:15.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:15.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:15.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:15.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:15.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:15.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:15.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:15.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:15.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:15.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:15.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:15.520][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2025-04-12 16:04:15.521][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:15.522][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67701".
biodb.TRACE[2025-04-12 16:04:15.523][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:15.524][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:15.524][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:15.525][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:15.526][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:15.527][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:15.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:15.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:15.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:15.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:15.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:15.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:15.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:15.539][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.DEBUG[2025-04-12 16:04:15.541][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:15.542][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:15.543][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.TRACE[2025-04-12 16:04:15.877][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701).
biodb.DEBUG[2025-04-12 16:04:16.216][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:16.218][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.content"
biodb.TRACE[2025-04-12 16:04:16.221][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.request"
biodb.TRACE[2025-04-12 16:04:16.223][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml"
biodb.DEBUG[2025-04-12 16:04:16.224][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:16.225][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:16.226][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:16.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:16.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:16.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:16.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:16.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:16.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:16.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:16.238][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:16.239][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:16.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.240][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:16.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:16.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.257][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:16.258][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:16.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.261][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:16.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:16.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.265][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:16.266][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:16.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.268][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:16.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:16.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.272][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:16.273][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:16.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.274][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:16.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:16.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.279][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:16.279][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:16.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:16.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:16.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.286][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:16.287][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:16.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.289][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:16.290][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:16.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.293][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:16.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:16.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.296][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:16.297][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:16.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.299][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:16.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:16.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.303][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:16.304][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:16.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.305][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:16.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:16.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.310][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:16.311][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:16.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.313][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:16.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:16.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.317][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:16.317][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:16.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.320][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:16.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:16.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:16.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:16.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:16.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:16.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:16.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:16.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:16.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:16.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:16.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:16.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:16.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:16.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:16.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:16.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:16.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:16.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:16.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:16.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:16.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:16.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:16.356][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2025-04-12 16:04:16.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:16.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:16.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:16.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:16.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:16.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:16.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:16.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:16.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:16.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:16.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:16.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:16.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:16.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:16.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:16.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:16.378][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2025-04-12 16:04:16.378][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:16.380][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67705".
biodb.TRACE[2025-04-12 16:04:16.381][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:16.382][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:16.384][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:16.385][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:16.386][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:16.387][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:16.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:16.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:16.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:16.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:16.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:16.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:16.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:16.399][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.DEBUG[2025-04-12 16:04:16.401][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:16.402][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:16.403][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.TRACE[2025-04-12 16:04:16.737][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705).
biodb.DEBUG[2025-04-12 16:04:17.076][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:17.082][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.content"
biodb.TRACE[2025-04-12 16:04:17.101][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.request"
biodb.TRACE[2025-04-12 16:04:17.104][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml"
biodb.DEBUG[2025-04-12 16:04:17.106][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:17.109][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:17.110][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:17.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:17.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:17.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:17.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:17.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:17.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:17.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:17.122][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.123][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.129][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:17.129][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:17.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.132][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:17.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:17.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.136][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:17.136][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:17.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.139][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:17.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:17.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.142][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:17.143][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:17.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.144][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:17.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:17.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.148][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:17.149][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:17.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:17.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:17.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.156][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:17.156][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:17.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.158][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.159][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:17.159][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:17.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.162][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:17.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:17.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.165][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:17.166][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:17.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:17.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:17.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.172][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:17.173][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:17.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:17.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:17.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.178][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:17.179][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:17.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.181][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:17.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:17.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.185][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:17.186][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:17.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:17.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:17.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:17.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:17.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:17.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:17.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:17.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:17.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:17.223][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2025-04-12 16:04:17.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:17.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:17.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:17.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:17.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:17.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:17.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:17.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:17.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:17.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:17.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:17.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:17.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:17.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:17.254][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2025-04-12 16:04:17.254][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:17.255][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75265".
biodb.TRACE[2025-04-12 16:04:17.256][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:17.257][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:17.258][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:17.259][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:17.260][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:17.260][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:17.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:17.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:17.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:17.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:17.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:17.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:17.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:17.272][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.DEBUG[2025-04-12 16:04:17.274][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:17.275][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:17.276][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.TRACE[2025-04-12 16:04:17.609][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265).
biodb.DEBUG[2025-04-12 16:04:17.943][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:17.945][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.content"
biodb.TRACE[2025-04-12 16:04:17.948][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.request"
biodb.TRACE[2025-04-12 16:04:17.950][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml"
biodb.DEBUG[2025-04-12 16:04:17.951][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:17.952][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:17.953][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:17.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:17.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:17.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:17.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:17.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:17.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:17.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:17.964][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.965][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.966][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.971][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:17.971][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:17.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.974][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:17.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:17.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.977][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:17.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:17.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.979][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:17.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:17.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.984][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:17.985][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:17.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.987][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.988][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:17.989][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:17.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.991][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:17.992][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:17.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.994][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.994][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:17.995][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:17.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.998][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:17.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:17.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.001][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.002][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.003][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.007][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:18.008][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:18.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.010][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:18.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:18.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.014][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:18.015][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:18.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.017][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:18.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:18.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.020][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:18.021][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:18.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.023][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.024][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:18.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:18.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:18.058][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2025-04-12 16:04:18.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:18.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:18.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:18.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:18.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:18.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:18.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:18.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:18.077][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2025-04-12 16:04:18.077][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:18.079][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77370".
biodb.TRACE[2025-04-12 16:04:18.080][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:18.081][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:18.082][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:18.082][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:18.083][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:18.084][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:18.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:18.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:18.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:18.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:18.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:18.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:18.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:18.096][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.DEBUG[2025-04-12 16:04:18.098][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:18.098][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:18.099][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.TRACE[2025-04-12 16:04:18.440][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370).
biodb.DEBUG[2025-04-12 16:04:18.776][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:18.778][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.content"
biodb.TRACE[2025-04-12 16:04:18.781][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.request"
biodb.TRACE[2025-04-12 16:04:18.783][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml"
biodb.DEBUG[2025-04-12 16:04:18.784][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:18.785][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:18.786][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:18.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:18.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:18.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:18.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:18.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:18.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:18.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:18.799][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.800][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.805][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:18.806][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:18.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.808][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:18.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:18.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.811][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:18.812][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:18.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:18.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:18.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.818][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:18.819][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:18.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.821][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:18.822][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:18.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.825][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:18.825][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:18.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.828][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:18.828][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:18.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.831][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:18.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:18.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.834][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.835][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.840][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:18.841][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:18.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.842][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.844][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:18.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:18.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.847][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:18.847][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:18.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.861][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:18.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:18.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.864][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:18.865][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:18.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.866][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:18.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:18.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:18.900][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2025-04-12 16:04:18.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:18.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:18.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:18.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:18.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:18.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:18.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:18.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:18.919][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2025-04-12 16:04:18.920][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:18.921][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79074".
biodb.TRACE[2025-04-12 16:04:18.922][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:18.923][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:18.924][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:18.924][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:18.925][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:18.926][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:18.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:18.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:18.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:18.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:18.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:18.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:18.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:18.937][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.DEBUG[2025-04-12 16:04:18.939][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:18.940][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:18.941][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.TRACE[2025-04-12 16:04:19.277][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074).
biodb.DEBUG[2025-04-12 16:04:19.618][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:19.620][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.content"
biodb.TRACE[2025-04-12 16:04:19.623][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.request"
biodb.TRACE[2025-04-12 16:04:19.625][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml"
biodb.DEBUG[2025-04-12 16:04:19.627][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:19.628][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:19.629][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:19.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:19.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:19.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:19.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:19.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:19.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:19.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:19.641][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:19.642][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:19.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.643][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:19.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:19.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.648][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:19.649][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:19.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.651][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.652][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:19.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:19.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.655][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:19.656][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:19.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.658][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.659][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:19.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:19.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.662][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:19.663][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:19.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.664][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:19.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:19.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.669][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:19.670][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:19.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:19.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:19.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.676][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:19.677][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:19.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.680][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:19.681][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:19.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.683][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:19.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:19.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.686][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:19.687][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:19.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.689][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:19.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:19.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.693][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:19.694][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:19.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.696][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.697][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:19.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:19.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.700][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:19.701][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:19.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.703][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:19.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:19.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.706][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:19.707][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:19.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.708][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.710][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:19.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:19.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:19.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:19.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:19.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:19.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:19.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:19.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:19.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:19.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:19.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:19.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:19.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:19.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:19.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:19.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:19.746][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2025-04-12 16:04:19.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:19.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:19.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:19.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:19.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:19.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:19.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:19.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:19.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:19.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:19.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:19.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:19.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:19.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:19.766][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2025-04-12 16:04:19.767][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:19.768][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79302".
biodb.TRACE[2025-04-12 16:04:19.769][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:19.770][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:19.771][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:19.772][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:19.773][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:19.773][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:19.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:19.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:19.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:19.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:19.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:19.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:19.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:19.786][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.DEBUG[2025-04-12 16:04:19.788][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:19.789][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:19.790][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.TRACE[2025-04-12 16:04:20.124][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302).
biodb.DEBUG[2025-04-12 16:04:20.466][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:20.468][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.content"
biodb.TRACE[2025-04-12 16:04:20.471][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.request"
biodb.TRACE[2025-04-12 16:04:20.474][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml"
biodb.DEBUG[2025-04-12 16:04:20.476][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:20.477][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:20.478][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:20.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:20.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:20.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:20.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:20.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:20.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:20.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:20.502][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:20.503][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:20.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.505][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:20.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:20.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.509][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:20.510][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:20.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.512][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:20.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:20.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.516][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:20.517][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:20.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.519][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.520][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:20.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:20.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.523][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:20.524][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:20.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:20.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:20.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.530][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:20.531][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:20.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:20.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:20.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.537][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:20.538][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:20.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.540][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.541][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:20.542][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:20.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.544][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.545][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:20.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:20.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.548][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:20.549][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:20.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:20.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:20.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.555][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:20.556][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:20.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.558][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:20.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:20.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.574][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:20.575][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:20.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.578][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:20.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:20.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.581][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:20.582][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:20.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:20.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:20.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:20.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:20.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:20.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:20.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:20.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:20.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:20.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:20.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:20.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:20.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:20.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:20.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:20.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:20.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:20.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:20.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:20.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:20.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:20.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:20.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:20.625][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2025-04-12 16:04:20.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:20.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:20.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:20.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:20.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:20.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:20.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:20.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:20.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:20.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:20.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:20.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:20.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:20.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:20.646][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2025-04-12 16:04:20.647][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:20.648][cch$loadFileContent] Trying to load 1 files from cache: [1]: "84164".
biodb.TRACE[2025-04-12 16:04:20.650][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:20.651][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:20.651][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:20.652][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:20.653][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:20.654][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:20.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:20.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:20.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:20.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:20.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:20.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:20.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:20.666][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.DEBUG[2025-04-12 16:04:20.668][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:20.669][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:20.670][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.TRACE[2025-04-12 16:04:21.005][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164).
biodb.DEBUG[2025-04-12 16:04:21.342][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:21.344][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.content"
biodb.TRACE[2025-04-12 16:04:21.347][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.request"
biodb.TRACE[2025-04-12 16:04:21.349][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml"
biodb.DEBUG[2025-04-12 16:04:21.350][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:21.351][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:21.352][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:21.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:21.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:21.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:21.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:21.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:21.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:21.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:21.364][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:21.365][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:21.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.366][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:21.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:21.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.371][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:21.371][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:21.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.373][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.374][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:21.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:21.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.377][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:21.378][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:21.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.381][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:21.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:21.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.384][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:21.384][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:21.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.386][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:21.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:21.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.390][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:21.391][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:21.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.392][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:21.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:21.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.396][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:21.397][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:21.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.398][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.400][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:21.401][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:21.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.403][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:21.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:21.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.406][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:21.407][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:21.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.408][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:21.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:21.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.413][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:21.413][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:21.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.415][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.416][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:21.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:21.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.419][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:21.420][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:21.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.422][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:21.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:21.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.425][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:21.426][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:21.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.428][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:21.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:21.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:21.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:21.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:21.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:21.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:21.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:21.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:21.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:21.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:21.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:21.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:21.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:21.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:21.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:21.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:21.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:21.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:21.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:21.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:21.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:21.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:21.473][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2025-04-12 16:04:21.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:21.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:21.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:21.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:21.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:21.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:21.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:21.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:21.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:21.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:21.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:21.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:21.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:21.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:21.492][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2025-04-12 16:04:21.492][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:21.493][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132314".
biodb.TRACE[2025-04-12 16:04:21.494][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:21.495][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:21.496][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:21.497][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:21.498][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:21.498][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:21.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:21.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:21.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:21.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:21.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:21.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:21.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:21.510][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.DEBUG[2025-04-12 16:04:21.512][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:21.512][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:21.513][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.TRACE[2025-04-12 16:04:21.846][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314).
biodb.DEBUG[2025-04-12 16:04:22.194][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:22.196][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.content"
biodb.TRACE[2025-04-12 16:04:22.199][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.request"
biodb.TRACE[2025-04-12 16:04:22.201][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml"
biodb.DEBUG[2025-04-12 16:04:22.202][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:22.203][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:22.204][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:22.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:22.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:22.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:22.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:22.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:22.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:22.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:22.215][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.217][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.221][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:22.222][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:22.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.225][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:22.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:22.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.228][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:22.229][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:22.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:22.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:22.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.234][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:22.235][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:22.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:22.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:22.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.241][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:22.242][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:22.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.244][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:22.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:22.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.248][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:22.249][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:22.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.250][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.251][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:22.252][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:22.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.254][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.255][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:22.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:22.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.259][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:22.259][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:22.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.261][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:22.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:22.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.266][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:22.267][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:22.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.268][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.270][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:22.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:22.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.273][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:22.274][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:22.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.276][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.277][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:22.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:22.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.280][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:22.281][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:22.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.282][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.283][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:22.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:22.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:22.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:22.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:22.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:22.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:22.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:22.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:22.337][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2025-04-12 16:04:22.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:22.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:22.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:22.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:22.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:22.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:22.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:22.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:22.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:22.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:22.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:22.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:22.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:22.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:22.357][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2025-04-12 16:04:22.358][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:22.359][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132338".
biodb.TRACE[2025-04-12 16:04:22.360][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:22.361][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:22.362][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:22.363][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:22.364][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:22.364][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:22.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:22.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:22.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:22.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:22.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:22.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:22.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:22.376][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.DEBUG[2025-04-12 16:04:22.379][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:22.380][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:22.381][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.TRACE[2025-04-12 16:04:22.728][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338).
biodb.DEBUG[2025-04-12 16:04:23.071][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:23.073][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.content"
biodb.TRACE[2025-04-12 16:04:23.076][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.request"
biodb.TRACE[2025-04-12 16:04:23.078][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml"
biodb.DEBUG[2025-04-12 16:04:23.080][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:23.081][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:23.082][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:23.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:23.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:23.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:23.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:23.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:23.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:23.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:23.094][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:23.095][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:23.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:23.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:23.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.101][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:23.102][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:23.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.103][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.104][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:23.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:23.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.108][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:23.109][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:23.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.111][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:23.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:23.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.114][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:23.115][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:23.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.117][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:23.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:23.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.121][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:23.122][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:23.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:23.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:23.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.128][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:23.129][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:23.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.130][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.131][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:23.132][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:23.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.153][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:23.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:23.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.157][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:23.158][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:23.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:23.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:23.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.164][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:23.165][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:23.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:23.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:23.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.172][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:23.173][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:23.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.176][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:23.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:23.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.179][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:23.180][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:23.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:23.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:23.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:23.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:23.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:23.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:23.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:23.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:23.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:23.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:23.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:23.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:23.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:23.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:23.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:23.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:23.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:23.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:23.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:23.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:23.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:23.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:23.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:23.219][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2025-04-12 16:04:23.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:23.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:23.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:23.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:23.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:23.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:23.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:23.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:23.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:23.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:23.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:23.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:23.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:23.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:23.239][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2025-04-12 16:04:23.240][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:23.241][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139019".
biodb.TRACE[2025-04-12 16:04:23.242][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:23.243][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:23.244][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:23.245][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:23.246][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:23.247][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:23.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:23.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:23.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:23.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:23.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:23.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:23.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:23.259][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.DEBUG[2025-04-12 16:04:23.262][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:23.262][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:23.264][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.TRACE[2025-04-12 16:04:23.598][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019).
biodb.DEBUG[2025-04-12 16:04:23.948][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:23.950][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.content"
biodb.TRACE[2025-04-12 16:04:23.953][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.request"
biodb.TRACE[2025-04-12 16:04:23.955][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml"
biodb.DEBUG[2025-04-12 16:04:23.957][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:23.957][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:23.958][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:23.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:23.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:23.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:23.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:23.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:23.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:23.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:23.971][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:23.972][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:23.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:23.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:23.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.977][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:23.978][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:23.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.980][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.981][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:23.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:23.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.984][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:23.985][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:23.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.987][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.988][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:23.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:23.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.991][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:23.992][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:23.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.993][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:23.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:23.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.997][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:23.999][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:23.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:24.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:24.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.005][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:24.006][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:24.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.007][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.008][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:24.009][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:24.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.011][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.012][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:24.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:24.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.015][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.016][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.017][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.021][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:24.022][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:24.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:24.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:24.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.028][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:24.029][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:24.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.031][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.032][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:24.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:24.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.035][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:24.036][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:24.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.038][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:24.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:24.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:24.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:24.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:24.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:24.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:24.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:24.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:24.074][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2025-04-12 16:04:24.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:24.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:24.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:24.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:24.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:24.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:24.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:24.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:24.094][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2025-04-12 16:04:24.095][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:24.096][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139367".
biodb.TRACE[2025-04-12 16:04:24.097][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:24.098][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:24.099][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:24.099][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:24.100][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:24.101][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:24.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:24.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:24.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:24.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:24.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:24.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:24.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:24.124][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.DEBUG[2025-04-12 16:04:24.126][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:24.126][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:24.136][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.TRACE[2025-04-12 16:04:24.470][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367).
biodb.DEBUG[2025-04-12 16:04:24.809][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:24.811][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.content"
biodb.TRACE[2025-04-12 16:04:24.814][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.request"
biodb.TRACE[2025-04-12 16:04:24.816][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml"
biodb.DEBUG[2025-04-12 16:04:24.817][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:24.818][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:24.819][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:24.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:24.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:24.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:24.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:24.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:24.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:24.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:24.830][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.831][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.833][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.837][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:24.838][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:24.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.840][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:24.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:24.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.843][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:24.844][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:24.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.845][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:24.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:24.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.849][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:24.850][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:24.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:24.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:24.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.855][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:24.856][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:24.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.857][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:24.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:24.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.861][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:24.862][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:24.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.864][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.864][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:24.865][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:24.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.867][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.867][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:24.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:24.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.870][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.876][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:24.877][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:24.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.879][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:24.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:24.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.882][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:24.883][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:24.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.885][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:24.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:24.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.888][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:24.889][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:24.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:24.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:24.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:24.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:24.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:24.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:24.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:24.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:24.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:24.925][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2025-04-12 16:04:24.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:24.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:24.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:24.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:24.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:24.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:24.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:24.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:24.944][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2025-04-12 16:04:24.945][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:24.946][cch$loadFileContent] Trying to load 1 files from cache: [1]: "145029".
biodb.TRACE[2025-04-12 16:04:24.947][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:24.948][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:24.949][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:24.950][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:24.951][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:24.951][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:24.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:24.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:24.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:24.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:24.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:24.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:24.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:24.963][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.DEBUG[2025-04-12 16:04:24.965][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:24.966][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:24.967][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.TRACE[2025-04-12 16:04:25.302][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029).
biodb.DEBUG[2025-04-12 16:04:25.715][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:25.717][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.content"
biodb.TRACE[2025-04-12 16:04:25.720][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.request"
biodb.TRACE[2025-04-12 16:04:25.723][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml"
biodb.DEBUG[2025-04-12 16:04:25.725][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:25.727][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:25.728][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:25.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:25.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:25.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:25.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:25.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:25.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:25.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:25.740][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:25.741][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:25.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:25.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:25.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.747][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:25.748][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:25.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.751][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:25.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:25.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.754][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:25.755][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:25.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.757][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.758][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:25.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:25.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.762][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:25.763][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:25.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:25.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:25.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.769][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:25.770][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:25.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:25.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:25.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.776][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:25.777][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:25.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.779][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:25.780][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:25.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.782][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.783][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:25.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:25.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.786][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:25.787][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:25.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:25.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:25.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.793][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:25.794][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:25.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.797][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:25.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:25.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.800][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:25.801][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:25.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.803][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:25.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:25.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.809][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:25.810][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:25.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.814][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:25.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:25.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:25.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:25.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:25.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:25.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:25.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:25.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:25.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:25.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:25.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:25.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:25.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:25.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:25.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:25.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:25.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:25.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:25.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:25.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:25.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:25.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:25.911][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2025-04-12 16:04:25.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:25.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:25.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:25.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:25.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:25.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:25.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:25.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:25.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:25.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:25.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:25.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:25.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:25.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:25.931][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2025-04-12 16:04:25.932][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:25.933][cch$loadFileContent] Trying to load 1 files from cache: [1]: "173077".
biodb.TRACE[2025-04-12 16:04:25.934][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:25.935][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:25.936][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:25.937][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:25.937][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:25.938][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:25.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:25.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:25.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:25.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:25.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:25.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:25.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:25.950][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.DEBUG[2025-04-12 16:04:25.952][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:25.953][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:25.954][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.TRACE[2025-04-12 16:04:26.288][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077).
biodb.DEBUG[2025-04-12 16:04:26.716][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:26.718][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.content"
biodb.TRACE[2025-04-12 16:04:26.721][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.request"
biodb.TRACE[2025-04-12 16:04:26.724][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml"
biodb.DEBUG[2025-04-12 16:04:26.725][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:26.727][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:26.728][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:26.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:26.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:26.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:26.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:26.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:26.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:26.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:26.740][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:26.741][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:26.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:26.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:26.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.747][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:26.748][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:26.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.750][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:26.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:26.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.753][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:26.754][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:26.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.756][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.757][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:26.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:26.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.760][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:26.761][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:26.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:26.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:26.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.767][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:26.768][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:26.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.770][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:26.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:26.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.775][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:26.776][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:26.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.779][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:26.780][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:26.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.781][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.782][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:26.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:26.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.786][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:26.786][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:26.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:26.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:26.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.793][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:26.794][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:26.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:26.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:26.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.799][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:26.800][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:26.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.803][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:26.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:26.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.806][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:26.807][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:26.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:26.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:26.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:26.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:26.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:26.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:26.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:26.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:26.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:26.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:26.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:26.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:26.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:26.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:26.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:26.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:26.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:26.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:26.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:26.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:26.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:26.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:26.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:26.847][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2025-04-12 16:04:26.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:26.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:26.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:26.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:26.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:26.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:26.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:26.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:26.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:26.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:26.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:26.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:26.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:26.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:26.868][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2025-04-12 16:04:26.869][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:26.870][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365445".
biodb.TRACE[2025-04-12 16:04:26.871][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:26.872][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:26.873][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:26.874][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:26.875][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:26.876][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:26.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:26.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:26.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:26.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:26.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:26.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:26.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:26.889][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.DEBUG[2025-04-12 16:04:26.891][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:26.892][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:26.893][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.TRACE[2025-04-12 16:04:27.475][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445).
biodb.DEBUG[2025-04-12 16:04:27.812][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:27.814][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.content"
biodb.TRACE[2025-04-12 16:04:27.817][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.request"
biodb.TRACE[2025-04-12 16:04:27.819][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml"
biodb.DEBUG[2025-04-12 16:04:27.820][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:27.821][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:27.822][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:27.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:27.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:27.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:27.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:27.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:27.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:27.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:27.834][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:27.835][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:27.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:27.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:27.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.841][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:27.842][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:27.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.844][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:27.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:27.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.848][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:27.849][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:27.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.852][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:27.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:27.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.855][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:27.856][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:27.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:27.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:27.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.875][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:27.876][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:27.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.877][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:27.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:27.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.881][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:27.882][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:27.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.884][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.885][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:27.886][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:27.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.887][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.888][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:27.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:27.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.891][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:27.892][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:27.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.893][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:27.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:27.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.897][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:27.898][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:27.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.900][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:27.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:27.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.904][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:27.904][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:27.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.906][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.907][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:27.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:27.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.910][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:27.911][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:27.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.912][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:27.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:27.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:27.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:27.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:27.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:27.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:27.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:27.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:27.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:27.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:27.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:27.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:27.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:27.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:27.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:27.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:27.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:27.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:27.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:27.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:27.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:27.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:27.948][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2025-04-12 16:04:27.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:27.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:27.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:27.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:27.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:27.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:27.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:27.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:27.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:27.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:27.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:27.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:27.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:27.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:27.969][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2025-04-12 16:04:27.970][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:27.971][cch$loadFileContent] Trying to load 1 files from cache: [1]: "32151".
biodb.TRACE[2025-04-12 16:04:27.972][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:27.973][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:27.974][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:27.975][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:27.975][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:27.976][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:27.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:27.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:27.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:27.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:27.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:27.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:27.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:27.989][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.DEBUG[2025-04-12 16:04:27.991][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:27.992][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:27.993][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.TRACE[2025-04-12 16:04:28.325][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151).
biodb.DEBUG[2025-04-12 16:04:28.659][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:28.661][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.content"
biodb.TRACE[2025-04-12 16:04:28.663][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.request"
biodb.TRACE[2025-04-12 16:04:28.666][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml"
biodb.DEBUG[2025-04-12 16:04:28.667][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:28.668][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:28.669][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:28.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:28.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:28.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:28.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:28.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:28.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:28.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:28.680][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:28.681][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:28.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:28.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:28.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.686][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:28.687][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:28.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.688][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.689][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:28.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:28.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.692][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:28.693][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:28.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.695][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:28.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:28.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.699][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:28.700][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:28.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:28.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:28.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.705][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:28.706][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:28.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:28.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:28.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.712][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:28.712][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:28.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.714][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.715][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:28.716][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:28.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.717][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.718][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:28.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:28.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.722][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.722][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.728][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:28.729][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:28.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:28.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:28.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.735][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:28.735][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:28.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.737][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.738][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:28.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:28.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.742][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:28.742][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:28.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.744][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.745][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:28.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:28.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:28.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:28.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:28.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:28.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:28.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:28.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:28.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:28.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:28.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:28.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:28.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:28.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:28.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:28.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:28.781][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2025-04-12 16:04:28.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:28.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:28.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:28.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:28.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:28.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:28.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:28.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:28.801][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2025-04-12 16:04:28.802][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:28.803][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67676".
biodb.TRACE[2025-04-12 16:04:28.804][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:28.805][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:28.806][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:28.816][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:28.818][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:28.819][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:28.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:28.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:28.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:28.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:28.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:28.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:28.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:28.831][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.DEBUG[2025-04-12 16:04:28.833][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:28.834][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:28.835][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.TRACE[2025-04-12 16:04:29.170][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676).
biodb.DEBUG[2025-04-12 16:04:29.531][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:29.534][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.content"
biodb.TRACE[2025-04-12 16:04:29.537][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.request"
biodb.TRACE[2025-04-12 16:04:29.539][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml"
biodb.DEBUG[2025-04-12 16:04:29.540][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:29.541][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:29.542][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:29.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:29.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:29.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:29.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:29.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:29.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:29.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:29.554][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:29.555][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:29.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.556][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:29.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:29.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.560][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:29.561][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:29.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.564][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:29.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:29.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.567][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:29.568][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:29.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.570][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.571][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:29.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:29.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.574][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:29.575][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:29.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.576][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:29.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:29.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.581][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:29.581][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:29.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:29.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:29.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.587][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:29.588][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:29.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.591][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:29.592][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:29.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.593][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.594][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:29.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:29.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.598][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:29.598][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:29.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.600][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:29.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:29.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.604][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:29.605][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:29.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.608][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:29.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:29.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.611][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:29.612][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:29.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.615][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:29.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:29.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.618][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:29.619][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:29.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.620][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.621][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:29.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:29.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:29.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:29.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:29.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:29.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:29.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:29.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:29.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:29.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:29.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:29.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:29.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:29.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:29.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:29.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:29.658][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2025-04-12 16:04:29.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:29.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:29.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:29.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:29.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:29.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:29.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:29.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:29.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:29.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:29.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:29.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:29.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:29.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:29.692][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2025-04-12 16:04:29.693][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:29.695][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69690".
biodb.TRACE[2025-04-12 16:04:29.697][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:29.698][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:29.700][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:29.702][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:29.703][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:29.704][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:29.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:29.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:29.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:29.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:29.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:29.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:29.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:29.717][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.DEBUG[2025-04-12 16:04:29.720][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:29.721][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:29.722][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.TRACE[2025-04-12 16:04:30.052][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690).
biodb.DEBUG[2025-04-12 16:04:30.388][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:30.390][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.content"
biodb.TRACE[2025-04-12 16:04:30.393][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.request"
biodb.TRACE[2025-04-12 16:04:30.395][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml"
biodb.DEBUG[2025-04-12 16:04:30.397][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:30.398][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:30.399][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:30.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:30.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:30.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:30.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:30.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:30.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:30.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:30.412][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:30.413][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:30.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:30.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:30.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.431][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:30.432][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:30.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.434][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.435][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:30.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:30.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.440][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:30.442][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:30.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:30.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:30.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.450][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:30.451][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:30.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.452][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.453][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:30.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:30.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.456][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:30.457][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:30.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:30.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:30.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.463][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:30.464][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:30.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.466][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.467][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:30.468][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:30.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.469][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.470][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:30.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:30.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.474][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:30.475][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:30.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:30.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:30.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.480][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:30.481][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:30.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:30.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:30.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.487][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:30.488][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:30.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.490][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:30.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:30.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.494][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:30.495][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:30.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.510][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:30.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:30.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:30.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:30.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:30.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:30.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:30.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:30.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:30.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:30.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:30.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:30.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:30.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:30.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:30.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:30.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:30.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:30.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:30.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:30.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:30.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:30.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:30.545][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2025-04-12 16:04:30.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:30.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:30.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:30.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:30.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:30.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:30.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:30.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:30.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:30.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:30.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:30.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:30.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:30.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:30.565][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2025-04-12 16:04:30.566][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:30.567][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69734".
biodb.TRACE[2025-04-12 16:04:30.568][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:30.569][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:30.570][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:30.571][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:30.571][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:30.572][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:30.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:30.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:30.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:30.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:30.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:30.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:30.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:30.584][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.DEBUG[2025-04-12 16:04:30.586][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:30.587][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:30.588][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.TRACE[2025-04-12 16:04:30.921][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734).
biodb.DEBUG[2025-04-12 16:04:31.262][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:31.264][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.content"
biodb.TRACE[2025-04-12 16:04:31.267][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.request"
biodb.TRACE[2025-04-12 16:04:31.270][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml"
biodb.DEBUG[2025-04-12 16:04:31.271][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:31.272][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:31.273][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:31.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:31.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:31.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:31.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:31.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:31.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:31.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:31.285][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:31.285][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:31.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.287][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:31.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:31.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.291][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:31.292][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:31.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.293][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.294][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:31.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:31.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.297][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:31.298][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:31.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.300][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.301][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:31.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:31.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.304][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:31.304][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:31.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.306][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:31.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:31.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.310][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:31.311][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:31.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.313][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:31.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:31.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.317][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:31.317][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:31.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.320][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:31.321][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:31.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.323][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:31.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:31.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.326][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:31.327][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:31.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:31.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:31.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.333][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:31.334][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:31.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.335][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.336][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:31.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:31.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.339][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:31.340][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:31.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.342][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:31.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:31.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.345][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:31.346][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:31.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.348][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.348][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:31.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:31.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:31.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:31.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:31.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:31.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:31.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:31.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:31.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:31.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:31.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:31.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:31.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:31.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:31.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:31.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:31.383][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2025-04-12 16:04:31.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:31.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:31.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:31.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:31.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:31.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:31.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:31.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:31.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:31.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:31.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:31.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:31.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:31.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:31.402][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2025-04-12 16:04:31.403][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:31.404][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79978".
biodb.TRACE[2025-04-12 16:04:31.405][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:31.406][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:31.406][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:31.407][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:31.408][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:31.409][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:31.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:31.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:31.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:31.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:31.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:31.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:31.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:31.420][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.DEBUG[2025-04-12 16:04:31.422][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:31.422][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:31.424][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.TRACE[2025-04-12 16:04:31.758][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978).
biodb.DEBUG[2025-04-12 16:04:32.094][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:32.096][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.content"
biodb.TRACE[2025-04-12 16:04:32.099][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.request"
biodb.TRACE[2025-04-12 16:04:32.101][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml"
biodb.DEBUG[2025-04-12 16:04:32.115][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:32.116][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:32.117][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:32.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:32.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:32.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:32.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:32.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:32.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:32.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:32.138][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:32.139][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:32.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.143][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:32.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:32.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.159][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:32.161][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:32.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.163][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:32.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:32.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.167][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:32.168][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:32.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.171][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:32.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:32.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.174][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:32.175][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:32.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:32.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:32.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.181][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:32.182][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:32.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.183][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:32.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:32.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.187][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:32.188][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:32.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.190][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.191][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:32.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:32.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.194][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:32.195][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:32.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.196][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.197][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:32.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:32.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.201][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:32.201][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:32.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:32.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:32.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.207][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:32.208][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:32.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:32.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:32.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.214][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:32.214][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:32.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.217][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:32.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:32.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.220][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:32.221][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:32.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:32.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:32.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:32.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:32.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:32.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:32.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:32.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:32.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:32.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:32.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:32.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:32.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:32.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:32.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:32.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:32.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:32.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:32.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:32.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:32.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:32.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:32.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:32.259][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2025-04-12 16:04:32.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:32.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:32.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:32.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:32.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:32.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:32.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:32.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:32.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:32.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:32.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:32.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:32.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:32.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:32.280][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2025-04-12 16:04:32.280][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:32.282][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88771".
biodb.TRACE[2025-04-12 16:04:32.283][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:32.284][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:32.284][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:32.285][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:32.286][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:32.287][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:32.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:32.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:32.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:32.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:32.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:32.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:32.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:32.299][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.DEBUG[2025-04-12 16:04:32.301][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:32.302][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:32.303][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.TRACE[2025-04-12 16:04:32.637][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771).
biodb.DEBUG[2025-04-12 16:04:32.976][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:32.978][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.content"
biodb.TRACE[2025-04-12 16:04:32.982][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.request"
biodb.TRACE[2025-04-12 16:04:32.984][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml"
biodb.DEBUG[2025-04-12 16:04:32.986][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:32.987][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:32.988][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:32.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:32.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:32.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:32.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:32.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:32.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:32.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.000][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.001][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.003][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.007][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:33.008][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:33.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.010][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.011][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:33.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:33.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.014][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:33.015][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:33.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.017][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.018][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:33.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:33.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.021][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:33.022][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:33.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:33.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:33.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.028][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:33.029][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:33.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.031][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:33.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:33.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.035][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:33.036][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:33.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.038][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.039][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:33.040][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:33.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.041][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.042][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:33.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:33.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.046][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.048][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.053][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:33.054][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:33.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.055][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:33.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:33.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.060][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:33.061][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:33.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.064][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:33.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:33.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.067][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:33.068][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:33.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.069][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:33.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:33.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.108][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2025-04-12 16:04:33.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.170][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:33.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.188][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.189][private$selectFields]
biodb.TRACE[2025-04-12 16:04:33.190][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:33.190][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:33.191][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.198][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.199][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.200][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.203][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:33.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.215][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:04:33.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.233][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.234][private$selectFields]
biodb.TRACE[2025-04-12 16:04:33.235][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:33.236][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:33.237][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.238][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.239][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.240][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.244][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.245][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.246][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.247][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.250][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:33.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.261][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-12 16:04:33.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.279][private$selectFields]
biodb.TRACE[2025-04-12 16:04:33.280][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:33.281][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:33.281][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.282][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.286][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.290][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.290][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.291][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.293][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.294][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:33.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.305][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-12 16:04:33.305][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:33.306][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:33.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:33.319][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:33.321][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:33.323][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-04-12 16:04:33.324][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:33.325][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-04-12 16:04:33.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.424][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:33.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.451][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.452][private$selectFields]
biodb.TRACE[2025-04-12 16:04:33.453][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:33.454][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:33.455][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.455][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.456][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.458][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.459][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.460][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.461][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.462][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.463][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.464][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.465][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.466][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.467][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:33.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.479][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-12 16:04:33.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.496][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.497][private$selectFields]
biodb.TRACE[2025-04-12 16:04:33.497][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:33.498][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:33.499][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.505][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.506][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.507][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.509][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.510][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.511][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:33.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.523][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-12 16:04:33.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.540][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.541][private$selectFields]
biodb.TRACE[2025-04-12 16:04:33.542][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:33.543][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:33.544][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.548][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.552][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.552][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.553][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.554][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.556][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.557][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:33.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.568][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:04:33.569][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:33.570][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:33.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:33.602][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:33.605][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:33.606][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-04-12 16:04:33.607][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:33.608][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-04-12 16:04:33.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.770][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:33.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.788][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.789][private$selectFields]
biodb.TRACE[2025-04-12 16:04:33.790][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:33.791][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:33.791][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.792][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.793][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.795][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.796][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.798][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.799][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.799][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.800][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.801][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.803][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.803][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:33.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.814][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-12 16:04:33.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.831][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.832][private$selectFields]
biodb.TRACE[2025-04-12 16:04:33.833][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:33.833][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:33.834][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.835][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.836][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.838][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.839][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.839][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.841][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.842][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.843][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.843][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.844][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.847][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:33.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.858][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:04:33.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.876][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.877][private$selectFields]
biodb.TRACE[2025-04-12 16:04:33.878][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:33.878][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:33.879][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.882][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.884][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.887][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.888][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:33.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.892][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:33.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.903][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-04-12 16:04:33.904][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:33.905][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:33.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:33.918][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:33.921][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:33.922][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365d4ea5e0e90826806fec708da6c9ab".
biodb.TRACE[2025-04-12 16:04:33.924][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:33.925][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content".
biodb.DEBUG[2025-04-12 16:04:33.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:34.010][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:34.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.039][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.040][private$selectFields]
biodb.TRACE[2025-04-12 16:04:34.041][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:34.041][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:34.042][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.046][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.047][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.053][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.054][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.064][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.067][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:34.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.079][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-04-12 16:04:34.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.095][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.096][private$selectFields]
biodb.TRACE[2025-04-12 16:04:34.097][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:34.098][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:34.098][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.099][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.100][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.102][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.103][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.106][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.107][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.108][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.110][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:34.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.121][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:04:34.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.139][private$selectFields]
biodb.TRACE[2025-04-12 16:04:34.139][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:34.140][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:34.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.144][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.148][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.149][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.150][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.151][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.153][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:34.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.164][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-12 16:04:34.164][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:34.165][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:34.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:34.177][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:34.180][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:34.181][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7b0416ab2d5cbf869f248000c039a8e8".
biodb.TRACE[2025-04-12 16:04:34.182][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:34.183][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content".
biodb.DEBUG[2025-04-12 16:04:34.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:34.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:34.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:34.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:34.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:34.283][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:34.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.300][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.301][private$selectFields]
biodb.TRACE[2025-04-12 16:04:34.302][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:34.303][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:34.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.304][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.305][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.306][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.307][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.308][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.309][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.310][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.311][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.311][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.312][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.314][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.315][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:34.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.325][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-04-12 16:04:34.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.340][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.341][private$selectFields]
biodb.TRACE[2025-04-12 16:04:34.342][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:34.349][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:34.350][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.351][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.352][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.354][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.354][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.355][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.357][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.358][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.359][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.360][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.361][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.362][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:34.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.372][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-04-12 16:04:34.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.391][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.392][private$selectFields]
biodb.TRACE[2025-04-12 16:04:34.393][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:34.393][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:34.394][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.395][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.396][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.398][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.400][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.401][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.402][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.403][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.405][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:34.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.415][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-04-12 16:04:34.416][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:34.416][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:34.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:34.446][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:34.448][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:34.449][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-12 16:04:34.450][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:34.452][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-12 16:04:34.454][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:34.456][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:34.457][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-12 16:04:34.458][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:34.459][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-12 16:04:34.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:34.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:34.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:34.517][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:34.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.533][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.534][private$selectFields]
biodb.TRACE[2025-04-12 16:04:34.535][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:34.535][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:34.536][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.537][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.539][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.541][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.543][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.544][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.545][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.548][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:34.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.558][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-12 16:04:34.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.574][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.575][private$selectFields]
biodb.TRACE[2025-04-12 16:04:34.576][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:34.576][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:34.577][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.578][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.581][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.583][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.584][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.587][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.588][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:34.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.597][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:04:34.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.614][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.615][private$selectFields]
biodb.TRACE[2025-04-12 16:04:34.615][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:34.616][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:34.617][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.618][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.620][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.627][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.628][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.631][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.631][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.633][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.634][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.635][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:34.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.645][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-12 16:04:34.646][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:34.647][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:34.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:34.658][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:34.660][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:34.661][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-12 16:04:34.662][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:34.663][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-12 16:04:34.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:34.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:34.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:34.720][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:34.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.736][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.737][private$selectFields]
biodb.TRACE[2025-04-12 16:04:34.737][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:34.740][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:34.740][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.741][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.742][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.747][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.748][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.748][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.749][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.751][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.751][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:34.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.761][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:04:34.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.776][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.777][private$selectFields]
biodb.TRACE[2025-04-12 16:04:34.778][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:34.779][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:34.779][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.780][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.782][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.783][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.784][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.786][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.787][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.787][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.788][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.790][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:34.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.800][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-12 16:04:34.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.816][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.817][private$selectFields]
biodb.TRACE[2025-04-12 16:04:34.818][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:34.818][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:34.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.820][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.822][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.827][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.828][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.828][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.829][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.832][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:34.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.842][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-12 16:04:34.842][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:34.843][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:34.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:34.855][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:34.857][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:34.858][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-12 16:04:34.859][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:34.860][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-12 16:04:34.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:34.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:34.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:34.925][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:34.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.941][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.942][private$selectFields]
biodb.TRACE[2025-04-12 16:04:34.942][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:34.943][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:34.944][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.945][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.945][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.947][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.947][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.948][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.950][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.951][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.954][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.955][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:34.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.965][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-12 16:04:34.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.981][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.981][private$selectFields]
biodb.TRACE[2025-04-12 16:04:34.982][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:34.983][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:34.983][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.985][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.986][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.987][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.988][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.989][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.990][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.991][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.991][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.992][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.993][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.994][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:34.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.004][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-12 16:04:35.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.021][private$selectFields]
biodb.TRACE[2025-04-12 16:04:35.022][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:35.022][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:35.023][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.024][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.026][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.029][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.030][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.030][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.032][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.033][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.034][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:35.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.044][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-04-12 16:04:35.045][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:35.046][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:35.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:35.075][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:35.077][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:35.078][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26eec570aadd234892b573eb0777bd78".
biodb.TRACE[2025-04-12 16:04:35.079][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:35.080][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content".
biodb.DEBUG[2025-04-12 16:04:35.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.237][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:35.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.254][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.255][private$selectFields]
biodb.TRACE[2025-04-12 16:04:35.255][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:35.256][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:35.257][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.258][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.260][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.261][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.262][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.264][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.268][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:35.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.278][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-12 16:04:35.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.294][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.295][private$selectFields]
biodb.TRACE[2025-04-12 16:04:35.295][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:35.296][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:35.297][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.298][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.298][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.300][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.300][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.303][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.304][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.305][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.306][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.307][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.308][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:35.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.319][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:04:35.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.335][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.336][private$selectFields]
biodb.TRACE[2025-04-12 16:04:35.337][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:35.338][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:35.339][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.340][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.342][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.343][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.344][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.347][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.348][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.348][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.352][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:35.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.368][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-12 16:04:35.369][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:35.370][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:35.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:35.386][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:35.389][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:35.390][cch$loadFileContent] Trying to load 1 files from cache: [1]: "20c224089a82bbffabd2e7dbc67cfae3".
biodb.TRACE[2025-04-12 16:04:35.391][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:35.393][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content".
biodb.DEBUG[2025-04-12 16:04:35.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:35.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:36.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:36.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:36.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:36.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:36.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:36.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:36.087][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:36.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:36.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.108][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.109][private$selectFields]
biodb.TRACE[2025-04-12 16:04:36.110][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:36.111][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:36.112][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.113][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.115][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.116][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.117][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.120][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.121][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.122][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.124][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:36.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.135][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:04:36.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:36.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.160][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.161][private$selectFields]
biodb.TRACE[2025-04-12 16:04:36.162][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:36.163][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:36.164][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.168][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.169][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.171][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.172][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.172][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.173][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.175][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.175][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:36.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.186][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-12 16:04:36.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:36.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.203][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.204][private$selectFields]
biodb.TRACE[2025-04-12 16:04:36.205][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:36.206][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:36.206][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.213][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.214][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.215][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.216][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.217][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.218][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:36.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.229][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-12 16:04:36.230][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:36.231][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:36.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:36.243][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:36.245][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:36.246][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-04-12 16:04:36.248][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:36.249][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-04-12 16:04:36.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:36.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:36.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:36.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:36.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:36.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:36.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:36.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:36.334][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:36.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:36.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.351][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.352][private$selectFields]
biodb.TRACE[2025-04-12 16:04:36.353][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:36.354][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:36.354][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.355][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.358][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.359][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.361][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.361][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.362][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.363][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.364][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.366][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.367][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:36.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.378][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-12 16:04:36.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:36.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.394][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.395][private$selectFields]
biodb.TRACE[2025-04-12 16:04:36.396][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:36.397][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:36.397][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.401][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.402][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.402][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.405][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.406][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.407][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.408][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.409][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:36.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.420][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-12 16:04:36.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:36.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.445][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.446][private$selectFields]
biodb.TRACE[2025-04-12 16:04:36.447][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:36.447][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:36.448][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.451][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.455][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.455][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.456][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:36.457][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.460][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:36.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.470][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:04:36.471][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:36.472][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-12 16:04:36.490][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:36.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:36.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.494][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:36.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:36.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.497][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:36.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:36.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-12 16:04:36.504][biodb::testThat]
biodb.INFO [2025-04-12 16:04:36.505][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-04-12 16:04:36.506][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:04:36.506][biodb::testThat]
biodb.TRACE[2025-04-12 16:04:36.509][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:04:36.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:04:36.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.512][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:04:36.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:04:36.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.515][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:04:36.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:04:36.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:36.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:36.578][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:36.581][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:36.582][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-12 16:04:36.583][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:36.585][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-12 16:04:36.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:36.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:36.610][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:36.612][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:36.613][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-12 16:04:36.615][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:36.616][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-12 16:04:36.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:36.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:36.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:36.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:36.657][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:36.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:36.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:36.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:36.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:36.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:36.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.674][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:36.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:36.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.678][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:36.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:36.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.688][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:36.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:36.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.691][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:36.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:36.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:36.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:36.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:36.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:36.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:36.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:36.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:36.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:36.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.708][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:36.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:36.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.711][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:36.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:36.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.728][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:36.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:36.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.738][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:36.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:36.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:36.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:36.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.746][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:36.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:36.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:36.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:36.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.753][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:36.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:36.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.767][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:36.768][private$selectFields]
biodb.TRACE[2025-04-12 16:04:36.769][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:36.769][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:36.770][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:36.771][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:36.772][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:36.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.774][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:36.775][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:36.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.781][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.783][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:36.786][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:36.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.789][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:36.790][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:36.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.793][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:36.794][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:36.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.796][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:36.797][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:36.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.798][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.799][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.800][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.802][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.803][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.805][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:36.806][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:36.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.809][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:36.810][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:36.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.812][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:36.813][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:36.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.815][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:36.816][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:36.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.818][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:36.819][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:36.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.821][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.822][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.824][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:36.825][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:36.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.827][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:36.828][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:36.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.830][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:36.831][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:36.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.832][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.833][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:36.834][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:36.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.835][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.836][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.837][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.839][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.840][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.842][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.842][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:36.843][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:36.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.844][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.845][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:36.846][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:36.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.847][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.848][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:36.849][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:36.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.851][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:36.852][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:36.853][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:36.854][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:36.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.855][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.856][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:36.857][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:36.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.860][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.862][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.862][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:36.863][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:36.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.865][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:36.866][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:36.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.868][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.869][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:36.869][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:36.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.872][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.873][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.874][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.875][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.876][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.877][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.878][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:36.879][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:36.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.880][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.881][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:36.882][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:36.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.883][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.884][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:36.885][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:36.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.887][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:36.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:36.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:36.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:36.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:36.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:36.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:36.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.898][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:36.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:36.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.902][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:36.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:36.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.905][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:36.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:36.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:36.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.918][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:36.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:36.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.921][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:36.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:36.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:36.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:36.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:36.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:36.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:36.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:36.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:36.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:36.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:36.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:36.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:36.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:36.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:36.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:36.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:36.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.967][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:36.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:36.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.971][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:36.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:36.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.974][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:36.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:36.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:36.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:36.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:36.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:36.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.983][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:36.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:36.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:36.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:36.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.990][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:36.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:36.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:36.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:36.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.002][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-04-12 16:04:37.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:37.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:37.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:37.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:37.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:37.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:37.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:37.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.027][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:37.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:37.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.031][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:37.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:37.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.041][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:37.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:37.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:37.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:37.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:37.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:37.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:37.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:37.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.059][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.062][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.077][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.080][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:37.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:37.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:37.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:37.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.090][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:37.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:37.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.093][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:37.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:37.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.096][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:37.097][private$selectFields]
biodb.TRACE[2025-04-12 16:04:37.097][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:37.098][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:37.099][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:37.100][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.101][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.103][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:37.104][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:37.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.106][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.107][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.109][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:37.110][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:37.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.112][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:37.113][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:37.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.115][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.116][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.117][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.118][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.119][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.121][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.121][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.122][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.125][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.125][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.128][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.129][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.130][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.131][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:37.132][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:37.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.134][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.134][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:37.135][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:37.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.138][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.139][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.141][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:37.142][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:37.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.143][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.145][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.147][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:37.148][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:37.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.150][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.151][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:37.151][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:37.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.153][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.154][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.155][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.156][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.157][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.158][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.160][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.161][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.164][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.165][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.167][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.168][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.171][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:37.171][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:37.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.173][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.174][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:37.175][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:37.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.177][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:37.178][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:37.179][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.180][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.182][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:37.183][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:37.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.186][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.188][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:37.189][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:37.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.192][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:37.192][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:37.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.197][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.198][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.200][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.201][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.204][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.205][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.207][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.208][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.210][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:37.211][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:37.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.213][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.214][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:37.215][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:37.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.217][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:37.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.228][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:37.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:37.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.232][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:37.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:37.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.235][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:37.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:37.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.247][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:37.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:37.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.251][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:37.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:37.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:37.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:37.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:37.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:37.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:37.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:37.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:37.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:37.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.278][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.281][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.454][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.476][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.479][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.482][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:37.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:37.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:37.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:37.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:37.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:37.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.495][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:37.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:37.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:37.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:37.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.501][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:37.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:37.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.509][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-04-12 16:04:37.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:37.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:37.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:37.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:37.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:37.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:37.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:37.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.526][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:37.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:37.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.529][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:37.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:37.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.539][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:37.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:37.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.555][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:37.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:37.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:37.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:37.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:37.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:37.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.571][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.575][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.592][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.595][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.598][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:37.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:37.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:37.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:37.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.604][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:37.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:37.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:37.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:37.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.610][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:37.611][private$selectFields]
biodb.TRACE[2025-04-12 16:04:37.612][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:37.612][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:37.613][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:37.614][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.615][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.617][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:37.618][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:37.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.619][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.620][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.623][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:37.624][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:37.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.626][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.626][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:37.627][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:37.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.628][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.629][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.630][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.632][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.633][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.634][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.635][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.636][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.639][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.639][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.641][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.642][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.642][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.645][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:37.646][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:37.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.648][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.648][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:37.649][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:37.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.651][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.651][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.652][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.654][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.655][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:37.656][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:37.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.657][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.659][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.660][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.661][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:37.662][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:37.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.663][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.664][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:37.665][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:37.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.667][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.668][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.670][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.670][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.671][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.673][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.674][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.676][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.677][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.677][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.680][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.681][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.683][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:37.684][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:37.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.685][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.686][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:37.687][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:37.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.689][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.690][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:37.691][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:37.691][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.692][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.694][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.695][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:37.696][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:37.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.697][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.698][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.702][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:37.703][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:37.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.705][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.706][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:37.707][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:37.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.708][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.709][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.710][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.712][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.713][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.714][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.715][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.716][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.717][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.720][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.721][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.722][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.723][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:37.724][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:37.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.726][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.727][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:37.728][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:37.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.729][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.730][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:37.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.742][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:37.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:37.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.750][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:37.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:37.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.753][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:37.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:37.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.765][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:37.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:37.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.768][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:37.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:37.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:37.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:37.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:37.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:37.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:37.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:37.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:37.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:37.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.812][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.815][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.818][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:37.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:37.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:37.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:37.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.828][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:37.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:37.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.831][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:37.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:37.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.834][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:37.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:37.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.837][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:37.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:37.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.844][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-04-12 16:04:37.845][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:37.846][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:37.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:37.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:37.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:37.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:37.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:37.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:37.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:37.859][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:37.861][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:37.862][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-12 16:04:37.863][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:37.864][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-12 16:04:37.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:37.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:37.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:37.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:37.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:37.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:37.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:37.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:37.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:37.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:37.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:37.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:37.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:37.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:37.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:37.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:37.905][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:37.907][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:37.908][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-12 16:04:37.909][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:37.910][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-12 16:04:37.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:37.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:37.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:37.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:37.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:37.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:37.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:37.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:37.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:37.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:37.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:37.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:37.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:37.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:37.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:37.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:37.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:37.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:37.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:37.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:37.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:37.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:37.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:37.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:37.968][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:37.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:37.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:37.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:37.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:37.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:37.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:37.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:37.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.986][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:37.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:37.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.989][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:37.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:37.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.998][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:37.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.002][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.014][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.018][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.021][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.055][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.058][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.067][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.073][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:38.074][private$selectFields]
biodb.TRACE[2025-04-12 16:04:38.075][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:38.075][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:38.076][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:38.077][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.078][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.080][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.081][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.082][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.084][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.085][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.086][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.087][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.088][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.089][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.089][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.091][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.091][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.092][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.094][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.095][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.097][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.097][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.099][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.099][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.100][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.103][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.103][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.106][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.106][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.109][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.110][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.112][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.113][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.115][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.116][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.117][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.120][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.121][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.122][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.123][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.124][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.125][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.127][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.128][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.130][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.130][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.131][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.133][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.133][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.134][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.136][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.136][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.137][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.139][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.139][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.140][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.142][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.143][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.146][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.146][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.149][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:38.150][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:38.150][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.151][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.153][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.153][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.154][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.156][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.157][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.159][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.160][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.161][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.163][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.164][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.166][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.167][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.168][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.169][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.170][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.173][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.173][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.175][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.176][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.177][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.178][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.179][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.180][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.182][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.185][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.186][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.189][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:38.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.199][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.203][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.206][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.222][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.247][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.250][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.253][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.276][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.279][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.282][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.291][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.295][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.312][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:04:38.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:38.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:38.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:38.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:38.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:38.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:38.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:38.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.329][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.332][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.341][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.344][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.360][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.364][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.381][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.384][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.387][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.390][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.396][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.400][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:38.400][private$selectFields]
biodb.TRACE[2025-04-12 16:04:38.401][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:38.402][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:38.403][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:38.404][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.404][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.407][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.408][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.409][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.410][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.413][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.414][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.416][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.417][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.419][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.419][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.420][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.422][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.422][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.423][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.426][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.426][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.428][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.429][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.429][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.431][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.432][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.433][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.434][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.435][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.436][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.438][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.439][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.441][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.442][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.445][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.445][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.448][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.449][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.451][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.452][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.454][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.455][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.457][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.458][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.459][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.461][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.462][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.463][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.464][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.465][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.467][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.468][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.469][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.470][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.471][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.473][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.473][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.474][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.476][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.477][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.479][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.480][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:38.480][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:38.481][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.482][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.485][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.486][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.488][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.489][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.491][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.492][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.494][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.495][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.497][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.498][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.500][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.501][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.503][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.503][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.505][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.505][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.506][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.508][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.509][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.510][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.511][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.512][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.513][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.514][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.515][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.516][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.517][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:38.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.527][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.530][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.533][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.545][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.551][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.574][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.577][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.584][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.603][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.606][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.609][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.617][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.620][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.623][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.626][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.636][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:04:38.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:38.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:38.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:38.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:38.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:38.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:38.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:38.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.652][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.657][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.666][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.669][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.684][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.687][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.703][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.706][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.712][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.717][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.720][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:38.721][private$selectFields]
biodb.TRACE[2025-04-12 16:04:38.722][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:38.722][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:38.723][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:38.724][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.725][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.726][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.727][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.728][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.729][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.730][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.731][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.732][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.735][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.735][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.737][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.738][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.738][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.740][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.741][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.742][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.744][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.745][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.747][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.748][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.750][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.751][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.754][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.755][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.756][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.757][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.758][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.760][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.760][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.762][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.763][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.765][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.766][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.768][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.769][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.772][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.772][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.775][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.775][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.777][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.778][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.780][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.781][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.783][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.784][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.786][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.787][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.789][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.790][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.792][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.793][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.795][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.796][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.798][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:38.798][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:38.799][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.800][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.802][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.803][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.805][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.806][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.808][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.809][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.811][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.812][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.814][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.815][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.818][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.818][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.821][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.822][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.824][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.825][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.827][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.828][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.830][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.831][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.832][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.833][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:38.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.848][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.852][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.855][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.867][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.870][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.913][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.916][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.919][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.922][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.925][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.931][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.934][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.944][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:04:38.945][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:38.945][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:38.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:38.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:38.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:38.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:38.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:38.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:38.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:38.958][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:38.961][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:38.962][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-12 16:04:38.963][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:38.964][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-12 16:04:38.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:38.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:38.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:38.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:38.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:38.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:38.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:38.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:38.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:38.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:38.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:38.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:38.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:38.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:38.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:38.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:39.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:39.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:39.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:39.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:39.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:39.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:39.123][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:39.125][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:39.126][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-12 16:04:39.127][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:39.129][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-12 16:04:39.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:39.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:39.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:39.193][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:39.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.211][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:39.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:39.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.214][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:39.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:39.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.223][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:39.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:39.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:39.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:39.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:39.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:39.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:39.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:39.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.243][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.246][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.263][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.266][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.269][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:39.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:39.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:39.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:39.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.276][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:39.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:39.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.280][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:39.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:39.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.283][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:39.284][private$selectFields]
biodb.TRACE[2025-04-12 16:04:39.285][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:39.285][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:39.286][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:39.287][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.288][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.290][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:39.291][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:39.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.293][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.294][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.296][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.297][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:39.298][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:39.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.299][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.300][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:39.301][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:39.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.303][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.304][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.305][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.306][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.307][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.308][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.310][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.311][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.311][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.313][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.314][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.315][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.317][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.318][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.320][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:39.321][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:39.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.323][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.324][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:39.325][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:39.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.327][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.328][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.331][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:39.331][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:39.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.333][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.334][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.335][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.337][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:39.338][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:39.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.340][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.340][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:39.341][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:39.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.344][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.345][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.347][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.348][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.351][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.352][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.353][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.354][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.355][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.357][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.358][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.360][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.360][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:39.361][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:39.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.364][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:39.365][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:39.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.366][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.367][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:39.368][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:39.369][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.370][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.371][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.372][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:39.373][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:39.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.375][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.376][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.378][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.379][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:39.379][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:39.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.381][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.382][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:39.383][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:39.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.385][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.386][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.388][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.388][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.389][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.391][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.392][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.395][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.396][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.398][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.399][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.401][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:39.402][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:39.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.403][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.404][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:39.405][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:39.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.407][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:39.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.419][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:39.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:39.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.427][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:39.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:39.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.430][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:39.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:39.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:39.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:39.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.459][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:39.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:39.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.463][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:39.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:39.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:39.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:39.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:39.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:39.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:39.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:39.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.485][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.488][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.491][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.513][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.517][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.520][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:39.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:39.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.526][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:39.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:39.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:39.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:39.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:39.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:39.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:39.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:39.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.539][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:39.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:39.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.547][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-04-12 16:04:39.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.564][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:39.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:39.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.568][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:39.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:39.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.578][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:39.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:39.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.581][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:39.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:39.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:39.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:39.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:39.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:39.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.594][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.598][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.601][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.617][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.620][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.623][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:39.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:39.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.626][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:39.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:39.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:39.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:39.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:39.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:39.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.636][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:39.637][private$selectFields]
biodb.TRACE[2025-04-12 16:04:39.638][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:39.638][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:39.639][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:39.640][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.641][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.643][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.643][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:39.644][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:39.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.646][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.647][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.647][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.650][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:39.651][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:39.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.653][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:39.654][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:39.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.656][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.656][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.657][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.659][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.660][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.660][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.663][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.664][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.665][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.666][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.667][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.669][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.670][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.672][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:39.673][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:39.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.675][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:39.676][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:39.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.679][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.679][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.682][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:39.682][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:39.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.684][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.685][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.686][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.687][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.688][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:39.689][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:39.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.691][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.691][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:39.692][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:39.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.694][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.695][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.696][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.698][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.699][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.700][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.702][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.703][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.705][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.706][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.707][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.709][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.710][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.710][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.717][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.718][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:39.719][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:39.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.721][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.722][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:39.722][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:39.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.725][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:39.726][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:39.727][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.728][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.730][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.731][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:39.732][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:39.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.734][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.734][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.735][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.737][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.738][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:39.739][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:39.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.741][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.742][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:39.743][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:39.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.745][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.746][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.747][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.751][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.752][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.756][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.758][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.760][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.761][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.764][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:39.765][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:39.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.767][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.767][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:39.768][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:39.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.770][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.771][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:39.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.783][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:39.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:39.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.787][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:39.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:39.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.791][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:39.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:39.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.806][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:39.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:39.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:39.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:39.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:39.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:39.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:39.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:39.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:39.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:39.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:39.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:39.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.863][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.866][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.869][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.872][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:39.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:39.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:39.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:39.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.879][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:39.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:39.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.882][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:39.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:39.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.885][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:39.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:39.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:39.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:39.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.896][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-04-12 16:04:39.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.913][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:39.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:39.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.916][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:39.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:39.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:39.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:39.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.929][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:39.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:39.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:39.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:39.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:39.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:39.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.945][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.948][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.963][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.967][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:39.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:39.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:39.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:39.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:39.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:39.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.979][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:39.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:39.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.982][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:39.983][private$selectFields]
biodb.TRACE[2025-04-12 16:04:39.984][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:39.985][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:39.985][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:39.986][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.987][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.988][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.989][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:39.990][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:39.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.992][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.993][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.995][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.996][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:39.997][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:39.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.998][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.999][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.000][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.002][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.002][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.003][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.005][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.005][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.006][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.009][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.010][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.011][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.016][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.017][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.019][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.019][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.020][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.022][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.023][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.023][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.025][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.025][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.026][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.028][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:40.029][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:40.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.030][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.031][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:40.032][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:40.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.034][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.035][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.038][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:40.038][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:40.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.040][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.040][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.041][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.043][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.043][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.044][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.046][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.046][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.047][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.049][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.049][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.050][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.053][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.053][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.055][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.056][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.057][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.058][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.059][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.059][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.061][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.062][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.063][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.064][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.065][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:40.066][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:40.066][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:40.067][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:40.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.068][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.069][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:40.070][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:40.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.072][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.073][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.075][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:40.076][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:40.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.077][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.078][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.079][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.081][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.082][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.084][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.085][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.087][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.088][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.090][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.090][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.091][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.092][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.093][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.094][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.096][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.097][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.099][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:40.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:40.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:40.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:40.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:40.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:40.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:40.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.109][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:40.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:40.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.112][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:40.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:40.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.115][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:40.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:40.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:40.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:40.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.130][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:40.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:40.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.133][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:40.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:40.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.173][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.176][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.180][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.208][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.212][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.222][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-04-12 16:04:40.223][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:40.224][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:40.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:40.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:40.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:40.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:40.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:40.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:40.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:40.241][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:40.244][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:40.245][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-12 16:04:40.246][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:40.247][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-12 16:04:40.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:40.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:40.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:40.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:40.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:40.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:40.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:40.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:40.268][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:40.270][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:40.271][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-12 16:04:40.272][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:40.273][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-12 16:04:40.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:40.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:40.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:40.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:40.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:40.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:40.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:40.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:40.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:40.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:40.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:40.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:40.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:40.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:40.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:40.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:40.317][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:40.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:40.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:40.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:40.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:40.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:40.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:40.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:40.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:40.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:40.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:40.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:40.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.334][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:40.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:40.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.337][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:40.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:40.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.347][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:40.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:40.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.350][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:40.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:40.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.366][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.369][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.386][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.389][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.395][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.405][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:40.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:40.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.409][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:40.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:40.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.412][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:40.413][private$selectFields]
biodb.TRACE[2025-04-12 16:04:40.413][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:40.414][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:40.415][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:40.416][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:40.417][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:40.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.419][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:40.420][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:40.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.423][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.425][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:40.426][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:40.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.428][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.429][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.431][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.431][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.433][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.434][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.437][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.438][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.439][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.440][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.441][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.443][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.444][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.446][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.447][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.448][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.449][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.450][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.452][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.452][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:40.453][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:40.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.455][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.456][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:40.457][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:40.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.458][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.459][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:40.460][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:40.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.466][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:40.467][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:40.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.468][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.469][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.470][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.472][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.473][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.474][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.475][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.476][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.477][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.479][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.480][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.481][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.482][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.483][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.484][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.487][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.488][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.490][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.491][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.493][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.494][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.497][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:40.498][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:40.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.500][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:40.501][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:40.502][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:40.503][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:40.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.505][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:40.506][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:40.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.509][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.512][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:40.512][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:40.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.515][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.516][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.517][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.518][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.519][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.520][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.521][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.522][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.524][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.524][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.525][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.527][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.528][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.529][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.531][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.532][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.534][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.535][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.537][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:40.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:40.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:40.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:40.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:40.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:40.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:40.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.548][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:40.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:40.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.551][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:40.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:40.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.555][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:40.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:40.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:40.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:40.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.571][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:40.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:40.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:40.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.620][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.622][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.625][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.635][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.638][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.641][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.651][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-04-12 16:04:40.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:40.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:40.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:40.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:40.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:40.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:40.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:40.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:40.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:40.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:40.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:40.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.667][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:40.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:40.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.671][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:40.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:40.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.680][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:40.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:40.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.683][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:40.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:40.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.698][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.701][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.716][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.719][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.722][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.726][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.732][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.735][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:40.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:40.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.738][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:40.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:40.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.741][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:40.742][private$selectFields]
biodb.TRACE[2025-04-12 16:04:40.742][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:40.743][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:40.744][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:40.745][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:40.745][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:40.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.747][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.748][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:40.749][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:40.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.751][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.754][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:40.755][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:40.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.756][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.757][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.758][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.760][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.760][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.761][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.763][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.764][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.766][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.767][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.769][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.770][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.772][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.773][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.775][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.775][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.776][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.778][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.779][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.781][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:40.782][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:40.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.784][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:40.785][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:40.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.787][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:40.788][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:40.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.790][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.791][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.793][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:40.794][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:40.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.796][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.797][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.798][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.799][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.800][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.802][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.803][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.805][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.806][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.808][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.809][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.811][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.812][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.814][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.815][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.817][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.818][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.820][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:40.821][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:40.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.824][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:40.824][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:40.825][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:40.826][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:40.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.828][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:40.829][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:40.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.831][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.832][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.833][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.834][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:40.835][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:40.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.838][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.838][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.841][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.846][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.848][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.849][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.850][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.852][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.853][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.854][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.855][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.856][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.857][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.858][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.859][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.861][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.861][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.862][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.864][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.865][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.866][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.867][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.868][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:40.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:40.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:40.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:40.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:40.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:40.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:40.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.879][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:40.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:40.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.883][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:40.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:40.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.886][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:40.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:40.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:40.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.899][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:40.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:40.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.902][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:40.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:40.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:40.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:40.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:40.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:40.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:40.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.939][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.942][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.946][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:40.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:40.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.971][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.974][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.977][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:40.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.983][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:40.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:40.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.990][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:40.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:40.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.004][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-04-12 16:04:41.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:41.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:41.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:41.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:41.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:41.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:41.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:41.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.021][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.024][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.033][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.037][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.054][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.057][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.074][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.077][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:41.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:41.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:41.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:41.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:41.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:41.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.090][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:41.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:41.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.093][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.097][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.100][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:41.101][private$selectFields]
biodb.TRACE[2025-04-12 16:04:41.102][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:41.102][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:41.103][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:41.104][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.105][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.107][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.108][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.108][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.111][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.111][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.113][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.114][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.115][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.117][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.118][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.120][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.121][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.123][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.123][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.124][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.127][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.128][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.129][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.130][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.131][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.133][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.138][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.141][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:41.142][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:41.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.143][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.144][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:41.145][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:41.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.146][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.147][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.148][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.149][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.150][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.150][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.152][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.153][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.155][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.156][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.158][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.159][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.161][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.162][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.164][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.164][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.166][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.167][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.169][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.170][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.172][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.173][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.175][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.176][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.177][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.178][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:41.179][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:41.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.181][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:41.182][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:41.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.185][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.185][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.188][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:41.189][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:41.189][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.190][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.192][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.193][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.193][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.195][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.198][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.199][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.200][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.202][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.203][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.205][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.205][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.206][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.208][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.209][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.209][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.211][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.212][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.213][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.214][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.215][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.216][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.217][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.218][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:41.219][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:41.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.221][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:41.222][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:41.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.224][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:41.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.234][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.237][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.240][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.259][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.300][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.303][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.307][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:41.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:41.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.313][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:41.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:41.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:41.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:41.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.320][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:41.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:41.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.323][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:41.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:41.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.326][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:41.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:41.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.334][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-04-12 16:04:41.335][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:41.336][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:41.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:41.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:41.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:41.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:41.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:41.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:41.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:41.349][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:41.351][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:41.352][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-12 16:04:41.353][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:41.354][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-12 16:04:41.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:41.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:41.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:41.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:41.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:41.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:41.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:41.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:41.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:41.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:41.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:41.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:41.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:41.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:41.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:41.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:41.396][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:41.399][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:41.400][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-12 16:04:41.401][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:41.402][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-12 16:04:41.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:41.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:41.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:41.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:41.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:41.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:41.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:41.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:41.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:41.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:41.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:41.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:41.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:41.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:41.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:41.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:41.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:41.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:41.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:41.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:41.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:41.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:41.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:41.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:41.465][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:41.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:41.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:41.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:41.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:41.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:41.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:41.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:41.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.483][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.487][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.497][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.500][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.517][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.520][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.537][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.540][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:41.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:41.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:41.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:41.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:41.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:41.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.552][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:41.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:41.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.555][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.558][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.561][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:41.562][private$selectFields]
biodb.TRACE[2025-04-12 16:04:41.563][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:41.564][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:41.565][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:41.565][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.568][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.568][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.569][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.571][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.572][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.572][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.575][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.575][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.578][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.579][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.581][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.582][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.584][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.585][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.587][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.587][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.588][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.591][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.592][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.594][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.595][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.598][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:41.598][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:41.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.600][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.601][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:41.602][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:41.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.603][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.604][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.605][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.606][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.607][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.608][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.610][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.611][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.612][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.613][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.614][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.617][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.617][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.619][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.620][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.621][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.623][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.624][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.626][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.626][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.627][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.629][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.630][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.630][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.633][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.634][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.636][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.637][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.639][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.640][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:41.640][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:41.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.642][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.643][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:41.644][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:41.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.645][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.646][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.647][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.649][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:41.650][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:41.651][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.652][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.654][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.654][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.655][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.657][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.660][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.661][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.662][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.663][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.664][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.665][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.667][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.668][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.668][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.670][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.671][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.672][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.674][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.675][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.677][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.678][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.678][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.680][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.681][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.681][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.684][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:41.685][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:41.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.686][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.687][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:41.688][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:41.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.690][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:41.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.705][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.708][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.711][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.724][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.727][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.730][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.753][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.756][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.759][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.780][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.783][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.786][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.790][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:41.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:41.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:41.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:41.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:41.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:41.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.799][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:41.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:41.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:41.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:41.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:41.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:41.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.813][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:04:41.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:41.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:41.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:41.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:41.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:41.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:41.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:41.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.829][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.833][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.842][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.858][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.876][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.879][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.894][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.897][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:41.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:41.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.904][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:41.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:41.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:41.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:41.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:41.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:41.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.914][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.917][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.920][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:41.921][private$selectFields]
biodb.TRACE[2025-04-12 16:04:41.922][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:41.923][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:41.923][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:41.924][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.925][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.927][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.928][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.928][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.930][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.930][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.931][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.933][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.934][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.935][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.936][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.937][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.938][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.940][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.940][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.941][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.943][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.944][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.946][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.947][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.949][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.950][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.952][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.952][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.953][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.954][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.955][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:41.956][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:41.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.957][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.958][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:41.959][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:41.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.960][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.961][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.962][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:41.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.964][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.965][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.965][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.967][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.968][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.969][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.970][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.971][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.972][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.974][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.975][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.982][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.982][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.984][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.985][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.985][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.987][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.988][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.988][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.991][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.992][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.993][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.994][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.994][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.996][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.997][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.997][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.999][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.000][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:42.000][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:42.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.002][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.003][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:42.004][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:42.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.005][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.006][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:42.007][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:42.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.009][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:42.010][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:42.010][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.011][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.012][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.013][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:42.014][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:42.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.015][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.016][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.017][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.018][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.019][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:42.020][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:42.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.021][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.022][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:42.023][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:42.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.025][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.026][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.027][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.028][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.029][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.030][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.031][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.032][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.033][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.034][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.034][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.036][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.037][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.038][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.039][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:42.040][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:42.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.041][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.042][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:42.043][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:42.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.046][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:42.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.055][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:42.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:42.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.059][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:42.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:42.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.062][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:42.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:42.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.073][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:42.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:42.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.076][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:42.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:42.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.079][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:42.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:42.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:42.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:42.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:42.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:42.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:42.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:42.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.100][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.103][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.106][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.127][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.130][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.132][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.135][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:42.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:42.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:42.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:42.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.141][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:42.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:42.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.144][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:42.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:42.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:42.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:42.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.151][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:42.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:42.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.158][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:04:42.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:42.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:42.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:42.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:42.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:42.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:42.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:42.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.174][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:42.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:42.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.177][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:42.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:42.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.186][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:42.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:42.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.189][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:42.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:42.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:42.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:42.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:42.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:42.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.205][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.209][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.225][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.228][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.231][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:42.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:42.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:42.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:42.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:42.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:42.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:42.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:42.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.247][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:42.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:42.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.250][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:42.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:42.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.253][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:42.253][private$selectFields]
biodb.TRACE[2025-04-12 16:04:42.254][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:42.255][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:42.255][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:42.256][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.257][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.259][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:42.260][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:42.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.261][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.262][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.263][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.264][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.265][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:42.265][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:42.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.268][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:42.269][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:42.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.270][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.271][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.271][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.273][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.274][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.276][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.277][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.277][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.279][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.279][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.280][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.282][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.283][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.285][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:42.286][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:42.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.288][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:42.289][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:42.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.292][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:42.292][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:42.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.294][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.295][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.295][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.297][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.297][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:42.298][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:42.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.300][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.301][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.302][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.303][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.304][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:42.305][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:42.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.306][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.307][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:42.308][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:42.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.310][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.311][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.311][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.313][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.314][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.314][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.317][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.318][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.320][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.321][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.323][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.324][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.326][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:42.327][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:42.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.330][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:42.330][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:42.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.332][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.333][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:42.334][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:42.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.335][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.336][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:42.337][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:42.338][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.338][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.340][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.341][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:42.342][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:42.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.344][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.345][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.347][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:42.348][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:42.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.350][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:42.351][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:42.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.353][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.354][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.354][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.357][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.357][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.360][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.361][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.363][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.364][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.366][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.367][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:42.368][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:42.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.369][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.370][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:42.371][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:42.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.372][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.373][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:42.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.385][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:42.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:42.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.388][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:42.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:42.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.392][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:42.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:42.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.405][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:42.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:42.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.409][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:42.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:42.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.412][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:42.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:42.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:42.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:42.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:42.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:42.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:42.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:42.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.455][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.459][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.462][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:42.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:42.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:42.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:42.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.472][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:42.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:42.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.476][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:42.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:42.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.479][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:42.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:42.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.483][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:42.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:42.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.491][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:04:42.492][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:42.493][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:42.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:42.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:42.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:42.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:42.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:42.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:42.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:42.519][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:42.522][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:42.529][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-12 16:04:42.531][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:42.532][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-12 16:04:42.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:42.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:42.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:42.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:42.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:42.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:42.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:42.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:42.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:42.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:42.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:42.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:42.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:42.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:42.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:42.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:42.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:42.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:42.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:42.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:42.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:42.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:42.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:42.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:42.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:42.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:42.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:42.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:42.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:42.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:42.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:42.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:42.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:42.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:42.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:42.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:42.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:42.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:42.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:42.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:42.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:42.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:42.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:42.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:42.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:42.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:42.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:42.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:42.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:42.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:42.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:42.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:42.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:42.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:42.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:42.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:42.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:42.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:42.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:42.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:42.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:42.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:42.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:42.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:42.687][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:42.690][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:42.691][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-12 16:04:42.692][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:42.693][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-12 16:04:42.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:42.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:42.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:42.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:42.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:42.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:42.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:42.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:42.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:42.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:42.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:42.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:42.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:42.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:42.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:42.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:42.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:42.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:42.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:42.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:42.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:42.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:42.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:42.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:42.753][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:42.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:42.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:42.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:42.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:42.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:42.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:42.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:42.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.771][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:42.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:42.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.774][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:42.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:42.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:42.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:42.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:42.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:42.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:42.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:42.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:42.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:42.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.805][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.808][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.830][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.834][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:42.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:42.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.840][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:42.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:42.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:42.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:42.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.860][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:42.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:42.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.863][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:42.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:42.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.867][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:42.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:42.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.873][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:42.874][private$selectFields]
biodb.TRACE[2025-04-12 16:04:42.875][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:42.875][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:42.876][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:42.877][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.878][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.880][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.881][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:42.881][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:42.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.883][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.884][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.885][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.887][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:42.888][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:42.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.889][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.890][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:42.891][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:42.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.893][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.893][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.894][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.897][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.898][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.900][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.901][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.903][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.904][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.906][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.906][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.907][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.910][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:42.910][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:42.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.912][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.913][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:42.913][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:42.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.915][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.916][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:42.917][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:42.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.919][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.919][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.920][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.922][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.923][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:42.923][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:42.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.925][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.926][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.927][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.929][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:42.930][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:42.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.932][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:42.933][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:42.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.934][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.935][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.936][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.938][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.939][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.941][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.942][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.943][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.944][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.945][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.946][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.947][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.948][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.949][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.951][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:42.952][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:42.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.953][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.954][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:42.955][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:42.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.957][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.957][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:42.958][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:42.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.960][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.961][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:42.961][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:42.962][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.963][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.964][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.965][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:42.966][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:42.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.967][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.969][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.970][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.971][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:42.972][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:42.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.974][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:42.975][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:42.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.976][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.977][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.978][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.980][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.981][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.981][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.984][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.985][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.986][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.987][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.988][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.989][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.990][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.991][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.993][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.994][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:42.994][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:42.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.996][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.997][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:42.998][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:42.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.999][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.000][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:43.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.011][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.014][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.018][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.034][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.037][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:43.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:43.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:43.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:43.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:43.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:43.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.059][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.063][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.066][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.090][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.093][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.096][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:43.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:43.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:43.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:43.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:43.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:43.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:43.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:43.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:43.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:43.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:43.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:43.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.129][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-04-12 16:04:43.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:43.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:43.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:43.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:43.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:43.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:43.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:43.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.147][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.150][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.160][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:43.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:43.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:43.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:43.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.180][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.183][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.199][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.202][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:43.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:43.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.209][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:43.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:43.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.212][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:43.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:43.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:43.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:43.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.219][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:43.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:43.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.222][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:43.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:43.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.225][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:43.226][private$selectFields]
biodb.TRACE[2025-04-12 16:04:43.227][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:43.228][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:43.229][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:43.230][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.231][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.232][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.233][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.234][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.235][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.239][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.240][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.240][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.242][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.243][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:43.244][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:43.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.246][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.247][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.250][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.251][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.253][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.254][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.257][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.258][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.259][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.260][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.261][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.264][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:43.265][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:43.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.268][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:43.269][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:43.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.270][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.271][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:43.272][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:43.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.274][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.275][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.275][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.277][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.278][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.279][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.282][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.285][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.286][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.289][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:43.290][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:43.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.293][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.294][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.296][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.296][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.298][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.300][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.301][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.302][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.304][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.305][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.306][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.309][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.311][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.313][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:43.314][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:43.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.317][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:43.318][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:43.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.320][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:43.321][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:43.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.324][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.325][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:43.326][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:43.328][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.328][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.331][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.333][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.334][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.336][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.337][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.339][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.340][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.341][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.344][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:43.345][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:43.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.347][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.348][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.351][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.352][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.353][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.354][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.355][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.358][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.359][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.360][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.361][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:43.362][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:43.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.364][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.364][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:43.365][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:43.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.368][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:43.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.379][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.382][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.385][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.412][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.415][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:43.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:43.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:43.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:43.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:43.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:43.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.476][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.479][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.482][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:43.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:43.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:43.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:43.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:43.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:43.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.496][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:43.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:43.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.500][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:43.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:43.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:43.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:43.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.510][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-04-12 16:04:43.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:43.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:43.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:43.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:43.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:43.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:43.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:43.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.527][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.530][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.540][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.544][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:43.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:43.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:43.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:43.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.559][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.562][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.578][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.581][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:43.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:43.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:43.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:43.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:43.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:43.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:43.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:43.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.596][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:43.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:43.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.599][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:43.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:43.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.602][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:43.603][private$selectFields]
biodb.TRACE[2025-04-12 16:04:43.604][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:43.604][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:43.605][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:43.606][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.607][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.609][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.609][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.611][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.612][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.613][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.615][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.616][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.617][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.618][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:43.619][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:43.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.620][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.621][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.622][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.623][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.624][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.625][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.626][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.627][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.628][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.629][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.630][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.631][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.633][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.633][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.635][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.636][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:43.636][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:43.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.638][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:43.639][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:43.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.641][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:43.642][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:43.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.645][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.646][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.647][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.648][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.649][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.650][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.651][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.652][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.653][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.654][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.655][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.656][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.657][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:43.658][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:43.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.659][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.660][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.661][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.663][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.664][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.664][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.667][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.668][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.669][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.670][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.671][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.673][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.674][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.676][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:43.677][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:43.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.679][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:43.680][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:43.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.682][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:43.683][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:43.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.685][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.686][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:43.686][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:43.687][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.688][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.691][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.691][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.693][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.694][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.695][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.696][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.697][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.698][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.699][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.700][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:43.701][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:43.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.703][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.704][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.706][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.707][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.714][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.715][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.716][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.717][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.718][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.719][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.721][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.721][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:43.722][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:43.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.724][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:43.725][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:43.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.728][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:43.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.738][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.741][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.744][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.756][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.762][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:43.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:43.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:43.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:43.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:43.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:43.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.803][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.806][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.810][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.813][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:43.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:43.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.816][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:43.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:43.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.819][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:43.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:43.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.822][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:43.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:43.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:43.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:43.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:43.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:43.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.835][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-04-12 16:04:43.836][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:43.837][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-12 16:04:43.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:43.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:43.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:43.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:43.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:43.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:43.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:43.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:43.892][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:43.895][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:43.896][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-12 16:04:43.897][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:43.898][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-12 16:04:43.900][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:43.903][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:43.904][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-12 16:04:43.905][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:43.906][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-12 16:04:43.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:43.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:43.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:43.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:43.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:43.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:43.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:43.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:43.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:43.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:43.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:43.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:43.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:43.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:43.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:43.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:43.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:43.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:43.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:43.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:43.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:43.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:43.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:43.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:43.968][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:43.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:43.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:43.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:43.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:43.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:43.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:43.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:43.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.986][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.989][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.005][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.009][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.019][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.025][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.029][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.045][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.048][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.060][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.063][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:44.064][private$selectFields]
biodb.TRACE[2025-04-12 16:04:44.065][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:44.065][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:44.066][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:44.067][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.068][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.069][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.070][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.071][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.072][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.073][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.074][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.075][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.076][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.077][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.080][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.080][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.082][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.083][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.084][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.085][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.086][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.087][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.088][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.089][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.090][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.091][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.092][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.093][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.094][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.095][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.096][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.097][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.098][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.102][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.102][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.105][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.105][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.120][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.121][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.122][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.123][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.124][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.126][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.127][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.128][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.129][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.130][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.132][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.133][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.138][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.139][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.141][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.142][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.143][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.144][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.145][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.146][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.147][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.148][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.150][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.150][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.151][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.153][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.154][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.154][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.156][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.157][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:44.158][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:44.159][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.159][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.162][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.163][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.164][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.168][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.169][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.172][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.172][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.175][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.176][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.177][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.178][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.179][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.181][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.182][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.184][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.185][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.187][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.188][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.190][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.191][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.191][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.193][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.194][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.194][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.196][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.197][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:44.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.207][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.211][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.214][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.228][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.234][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.258][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.262][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.265][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.293][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.296][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.300][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.303][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.309][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.316][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.319][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.327][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-04-12 16:04:44.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:44.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:44.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:44.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:44.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:44.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:44.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:44.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.344][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.347][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.357][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.360][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.376][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.379][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.393][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.397][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.400][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.403][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.406][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.409][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.412][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:44.413][private$selectFields]
biodb.TRACE[2025-04-12 16:04:44.414][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:44.414][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:44.415][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:44.416][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.417][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.419][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.419][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.420][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.422][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.423][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.425][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.426][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.428][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.429][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.430][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.431][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.432][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.432][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.434][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.434][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.435][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.437][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.438][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.440][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.440][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.441][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.443][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.444][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.446][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.447][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.448][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.449][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.450][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.451][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.452][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.453][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.455][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.455][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.456][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.458][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.458][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.461][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.462][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.463][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.464][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.465][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.466][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.468][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.468][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.471][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.471][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.473][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.474][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.475][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.477][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.478][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.479][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.480][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.481][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.483][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.484][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.487][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.488][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.490][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:44.491][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:44.492][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.493][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.494][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.495][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.496][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.497][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.498][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.499][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.501][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.501][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.502][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.505][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.505][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.507][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.508][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.508][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.510][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.511][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.512][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.513][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.514][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.515][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.516][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.517][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.518][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.520][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.520][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.521][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.523][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.523][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.524][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.527][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.527][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.530][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:44.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.540][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.543][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.546][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.563][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.566][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.590][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.593][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.596][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.618][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.621][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.624][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.633][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.651][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-04-12 16:04:44.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:44.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:44.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:44.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:44.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:44.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:44.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:44.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.668][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.671][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.680][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.684][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.700][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.703][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.720][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.723][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.727][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.737][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.740][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:44.741][private$selectFields]
biodb.TRACE[2025-04-12 16:04:44.741][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:44.742][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:44.743][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:44.744][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.745][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.747][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.748][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.750][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.751][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.753][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.754][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.756][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.757][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.758][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.760][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.761][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.763][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.764][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.766][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.767][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.769][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.770][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.773][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.773][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.775][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.776][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.777][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.779][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.780][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.781][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.782][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.783][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.797][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.798][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.800][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.801][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.803][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.804][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.807][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.808][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.813][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.814][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.817][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.818][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.819][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.820][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.821][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.822][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.823][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.824][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.825][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.826][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.827][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.829][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.830][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.832][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.833][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.835][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:44.836][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:44.837][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.838][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.840][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.845][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.847][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.848][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.848][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.851][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.851][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.853][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.854][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.855][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.857][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.857][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.860][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.860][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.862][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.862][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.863][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.864][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.866][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.866][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.868][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.868][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.869][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.870][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.871][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.872][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.874][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.874][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:44.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.884][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.888][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.891][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.904][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.907][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.911][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.951][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.955][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.958][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.961][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.964][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.967][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.971][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.977][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.984][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-04-12 16:04:44.985][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:44.986][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:44.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:44.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:44.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:44.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:44.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:44.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:44.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:44.999][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:45.001][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:45.002][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-12 16:04:45.003][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:45.004][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-12 16:04:45.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:45.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:45.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:45.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:45.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:45.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:45.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:45.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:45.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:45.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:45.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:45.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:45.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:45.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:45.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:45.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:45.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:45.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:45.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:45.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:45.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:45.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:45.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:45.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:45.062][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:45.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:45.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:45.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:45.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:45.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:45.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:45.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:45.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.078][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.081][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.091][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.110][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.112][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.133][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.136][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.142][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.148][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.151][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:45.152][private$selectFields]
biodb.TRACE[2025-04-12 16:04:45.152][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:45.153][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:45.154][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:45.155][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.155][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.157][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.158][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.160][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.164][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.164][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.166][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.167][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.168][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.169][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.170][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.172][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.173][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.175][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.176][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.177][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.178][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.179][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.181][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.182][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.183][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.184][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.184][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.186][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.186][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.187][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.189][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.189][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.190][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.192][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.193][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.195][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.198][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.198][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.199][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.201][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.202][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.204][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.205][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.207][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.207][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.209][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.210][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.211][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.212][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.213][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.216][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.216][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.218][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.218][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.219][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.221][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.222][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.224][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:45.225][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:45.225][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.227][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.228][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.229][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.230][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.234][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.235][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.236][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.238][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.239][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.241][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.242][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.244][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.244][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.245][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.247][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.247][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.248][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.250][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.250][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.251][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.253][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.253][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.254][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.255][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.256][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.257][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.259][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.260][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.261][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.262][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.263][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:45.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.273][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.276][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.279][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.294][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.297][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.319][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.322][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.326][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.348][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.352][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.355][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.363][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.366][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.373][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.385][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:04:45.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:45.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:45.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:45.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:45.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:45.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:45.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:45.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.401][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.404][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.416][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.431][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.434][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.449][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.452][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.457][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.460][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.463][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.466][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:45.467][private$selectFields]
biodb.TRACE[2025-04-12 16:04:45.468][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:45.468][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:45.469][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:45.470][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.470][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.472][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.472][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.473][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.475][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.476][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.478][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.479][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.479][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.481][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.481][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.482][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.484][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.485][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.487][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.488][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.490][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.491][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.493][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.494][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.495][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.496][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.497][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.499][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.500][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.501][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.502][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.503][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.505][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.506][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.507][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.508][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.509][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.511][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.513][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.514][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.515][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.516][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.517][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.518][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.519][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.520][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.520][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.523][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.523][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.525][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.526][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.528][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.528][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.529][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.531][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.532][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.532][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.534][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.535][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.536][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.537][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.538][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.539][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.540][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.541][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:45.542][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:45.543][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.543][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.545][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.546][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.546][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.548][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.549][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.550][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.552][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.553][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.554][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.555][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.555][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.557][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.558][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.559][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.560][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.561][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.562][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.564][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.565][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.566][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.567][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.568][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.570][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.571][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.573][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.573][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.574][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.576][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.576][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:45.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.587][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.590][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.605][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.621][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.624][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.674][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.677][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.680][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.683][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.692][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.695][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.706][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:04:45.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:45.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:45.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:45.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:45.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:45.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:45.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:45.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.723][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.726][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.736][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.739][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.754][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.758][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.774][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.777][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.780][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.783][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.790][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.793][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:45.794][private$selectFields]
biodb.TRACE[2025-04-12 16:04:45.795][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:45.795][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:45.796][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:45.797][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.798][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.800][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.801][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.803][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.804][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.806][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.807][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.807][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.810][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.810][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.813][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.814][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.815][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.816][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.817][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.819][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.820][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.822][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.823][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.824][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.825][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.826][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.829][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.829][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.832][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.833][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.835][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.836][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.838][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.839][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.842][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.844][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.845][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.846][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.847][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.848][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.849][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.851][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.852][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.853][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.854][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.855][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.857][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.858][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.860][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.860][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.861][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.863][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.864][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.867][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.867][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.870][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.871][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.873][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:45.874][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:45.874][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.875][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.876][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.877][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.878][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.880][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.881][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.882][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.883][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.884][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.885][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.887][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.888][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.891][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.891][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.893][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.894][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.895][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.897][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.898][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.900][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.901][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.903][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.904][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.906][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.906][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.907][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.910][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:45.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.921][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.930][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.933][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.946][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.950][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.953][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.996][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.999][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.003][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.013][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.023][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.031][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-04-12 16:04:46.032][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:46.033][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:46.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:46.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:46.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:46.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:46.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:46.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:46.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:46.046][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:46.049][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:46.050][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-12 16:04:46.051][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:46.052][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-12 16:04:46.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:46.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:46.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:46.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:46.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:46.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:46.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:46.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:46.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:46.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:46.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:46.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:46.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:46.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:46.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:46.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:46.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:46.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:46.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:46.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:46.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:46.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:46.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:46.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:46.132][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:46.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:46.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:46.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:46.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:46.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:46.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:46.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:46.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.150][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.153][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.184][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.187][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.203][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.206][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.217][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.223][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:46.224][private$selectFields]
biodb.TRACE[2025-04-12 16:04:46.225][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:46.225][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:46.226][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:46.227][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.228][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.231][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.237][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.239][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.241][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.244][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.244][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.247][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.248][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.250][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.251][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.253][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.254][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.256][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.257][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.259][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.259][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.260][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.262][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.263][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.263][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.265][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.266][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.267][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.268][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.269][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.270][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.271][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.272][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.273][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.274][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.275][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.276][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.277][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.280][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.281][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.282][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.283][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.284][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.285][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.286][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.287][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.288][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.290][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.291][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.293][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.294][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.295][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.296][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.297][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.299][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.299][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.300][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.303][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.303][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.305][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.306][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.306][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.309][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:46.309][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:46.310][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.311][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.313][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.314][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.319][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.320][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.323][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.323][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.325][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.326][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.327][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.328][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.329][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.330][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.332][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.333][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.334][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.335][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.336][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.337][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.338][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.339][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.340][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.341][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.342][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.344][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.345][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.347][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:46.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.358][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.361][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.365][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.379][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.382][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.409][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.412][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.415][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.439][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.443][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.446][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.450][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.457][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.460][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.464][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.467][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.475][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-04-12 16:04:46.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:46.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:46.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:46.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:46.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:46.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:46.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:46.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.493][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.497][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.506][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.510][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.542][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.545][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.565][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.568][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.574][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.577][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.580][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.583][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:46.584][private$selectFields]
biodb.TRACE[2025-04-12 16:04:46.585][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:46.586][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:46.586][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:46.587][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.588][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.590][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.591][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.593][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.593][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.594][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.596][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.596][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.597][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.599][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.600][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.600][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.602][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.603][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.604][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.606][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.607][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.609][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.610][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.611][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.612][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.613][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.615][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.616][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.619][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.620][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.621][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.622][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.623][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.624][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.625][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.626][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.628][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.629][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.631][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.632][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.634][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.634][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.635][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.637][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.637][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.638][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.639][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.640][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.641][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.643][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.644][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.644][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.646][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.646][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.647][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.650][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.650][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.653][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.654][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.656][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.657][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.658][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.659][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.660][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.661][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.662][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:46.663][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:46.664][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.665][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.667][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.668][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.670][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.672][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.674][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.675][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.676][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.677][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.678][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.680][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.681][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.683][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.684][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.686][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.686][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.687][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.689][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.690][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.691][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.692][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.693][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.694][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.696][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.696][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.697][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.699][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.700][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:46.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.711][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.714][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.717][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.731][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.734][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.780][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.784][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.787][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.791][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.813][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-04-12 16:04:46.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:46.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:46.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:46.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:46.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:46.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:46.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:46.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.837][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.841][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.850][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.853][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.866][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.870][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.873][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.889][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.892][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.906][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.909][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:46.910][private$selectFields]
biodb.TRACE[2025-04-12 16:04:46.911][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:46.911][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:46.912][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:46.913][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.914][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.915][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.916][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.917][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.918][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.919][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.921][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.922][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.923][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.925][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.926][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.926][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.929][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.930][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.932][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.933][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.933][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.935][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.936][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.937][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.939][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.940][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.942][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.942][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.943][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.945][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.946][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.947][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.948][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.949][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.950][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.951][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.952][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.953][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.955][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.956][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.956][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.958][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.959][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.960][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.961][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.962][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.963][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.964][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.965][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.966][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.968][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.969][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.970][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.971][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.972][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.973][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.974][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.975][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.976][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.978][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.978][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.979][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.982][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.982][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.984][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.985][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.986][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.987][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.988][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.989][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.991][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:46.992][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:46.993][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.994][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.996][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.996][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.997][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.999][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.000][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.001][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.002][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.003][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.004][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.006][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.007][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.007][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.009][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.010][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.011][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.012][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.013][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.014][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.015][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.016][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.017][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.018][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.019][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.020][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.021][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.022][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.023][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.025][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.025][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.026][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.028][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:47.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.039][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.043][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.046][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.059][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.062][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.127][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.130][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.134][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.143][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.149][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.156][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.164][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:04:47.165][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:47.165][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:47.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:47.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:47.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:47.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:47.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:47.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:47.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:47.183][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:47.186][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:47.187][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-12 16:04:47.188][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:47.190][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-12 16:04:47.192][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:47.195][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:47.196][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-12 16:04:47.197][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:47.198][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-12 16:04:47.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:47.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:47.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:47.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:47.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:47.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:47.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:47.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:47.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:47.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:47.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:47.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:47.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:47.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:47.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:47.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:47.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:47.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:47.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:47.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:47.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:47.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:47.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:47.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:47.260][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:47.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:47.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:47.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:47.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:47.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:47.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:47.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:47.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.278][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.281][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.290][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.293][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.309][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.312][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.329][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.332][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.339][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.345][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.349][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:47.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:47.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.352][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:47.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:47.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.356][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:47.356][private$selectFields]
biodb.TRACE[2025-04-12 16:04:47.357][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:47.358][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:47.359][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:47.359][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.360][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.363][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.364][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.365][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.366][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.369][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.370][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.372][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.372][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.373][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.376][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.376][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.378][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.379][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.380][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.381][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.382][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.383][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.390][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.392][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.393][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.394][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.395][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.397][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.398][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.401][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.401][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.403][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.404][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:47.404][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:47.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.407][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.408][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.409][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.410][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.411][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.413][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.414][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.417][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.417][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.419][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.420][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.421][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.422][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.423][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.424][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.426][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.426][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.427][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.430][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.430][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.432][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.433][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.434][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.436][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.437][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.439][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.440][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.443][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.444][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.446][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:47.447][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:47.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.448][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.449][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:47.450][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:47.451][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.452][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.453][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.454][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.455][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.457][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.460][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.461][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.463][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.464][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.466][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.467][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.467][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.469][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.469][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.470][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.472][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.473][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.474][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.475][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.476][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.477][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.478][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.479][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.480][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.481][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.482][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.483][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.485][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.485][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.486][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.488][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.488][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:47.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.499][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.502][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.506][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.519][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.522][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.525][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.547][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.551][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.554][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.577][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.581][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.584][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.591][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.594][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.604][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.612][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-04-12 16:04:47.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:47.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:47.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:47.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:47.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:47.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:47.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:47.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.629][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.632][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.642][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.667][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.670][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.698][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.703][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.713][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.719][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:47.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:47.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.722][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:47.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:47.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.726][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:47.726][private$selectFields]
biodb.TRACE[2025-04-12 16:04:47.727][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:47.728][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:47.729][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:47.730][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.731][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.732][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.733][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.734][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.735][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.736][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.737][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.739][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.739][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.740][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.742][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.743][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.744][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.745][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.746][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.747][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.748][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.749][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.750][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.752][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.753][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.753][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.756][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.757][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.759][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.760][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.761][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.762][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.763][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.765][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.766][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.769][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:47.770][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:47.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.772][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.773][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.775][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.776][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.782][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.782][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.785][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.785][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.787][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.788][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.789][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.791][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.792][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.793][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.794][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.795][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.801][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.801][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.803][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.804][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.804][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.806][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.807][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.808][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.810][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:47.811][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:47.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.813][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:47.814][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:47.814][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.815][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.818][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.819][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.821][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.822][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.824][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.825][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.828][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.828][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.831][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.832][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.833][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.834][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.835][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.837][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.838][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.840][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.841][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.843][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.844][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.847][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.848][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.850][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.851][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.853][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.854][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:47.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.865][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.868][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.871][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.883][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.890][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.912][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.915][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.918][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.940][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.943][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.946][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.954][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.961][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.964][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.967][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.970][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.978][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-04-12 16:04:47.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:47.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:47.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:47.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:47.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:47.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:47.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:47.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.994][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.997][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.006][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.009][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.025][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.028][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.043][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.046][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:48.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:48.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.052][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:48.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:48.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:48.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:48.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:48.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:48.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.062][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.065][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.068][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:48.069][private$selectFields]
biodb.TRACE[2025-04-12 16:04:48.070][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:48.071][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:48.071][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:48.072][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.073][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.075][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.076][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.077][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.078][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.078][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.081][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.081][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.084][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.084][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.087][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.087][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.089][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.090][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.092][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.093][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.094][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.096][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.097][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.099][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.099][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.102][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:48.102][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:48.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.105][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:48.105][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:48.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.107][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.108][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.108][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.111][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.111][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.113][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.114][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.115][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.117][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.118][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.120][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.121][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.122][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.123][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.124][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.126][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.127][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.129][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.129][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.130][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.133][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.133][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.135][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.136][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.137][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.139][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.140][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.142][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:48.143][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:48.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.144][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.145][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:48.146][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:48.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.148][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.149][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.150][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.151][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:48.151][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:48.152][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.153][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.155][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.156][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.158][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.159][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.161][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.162][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.164][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.165][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.167][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.168][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.170][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.171][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.173][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.173][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.174][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.175][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.176][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.177][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.178][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.179][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:48.180][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:48.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.182][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:48.183][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:48.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.185][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:48.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.195][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.198][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.202][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.222][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.264][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.266][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.269][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:48.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:48.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.276][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:48.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:48.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.279][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:48.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:48.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.282][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:48.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:48.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.285][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:48.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:48.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.288][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:48.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:48.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.295][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-04-12 16:04:48.295][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:48.296][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:48.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:48.309][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:48.311][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:48.312][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-12 16:04:48.313][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:48.314][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-12 16:04:48.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:48.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:48.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:48.371][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:48.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.388][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.391][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.419][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.422][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.438][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.441][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.444][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:48.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:48.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.447][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:48.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:48.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.450][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:48.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:48.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.453][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:48.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:48.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.456][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.459][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.463][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:48.463][private$selectFields]
biodb.TRACE[2025-04-12 16:04:48.464][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:48.465][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:48.466][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:48.467][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.467][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.469][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.470][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.471][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.472][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.473][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.475][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.476][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.482][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.484][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.485][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.487][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.488][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.490][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.491][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.493][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.494][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.496][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.497][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.499][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.500][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.501][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.502][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:48.503][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:48.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.505][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:48.506][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:48.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.507][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.508][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.509][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.510][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.511][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.512][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.513][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.514][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.515][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.516][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.517][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.517][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.519][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.520][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.520][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.522][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.523][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.525][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.526][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.528][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.528][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.529][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.531][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.532][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.534][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.535][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.537][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.538][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.539][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.540][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:48.541][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:48.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.543][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:48.543][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:48.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.545][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.546][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.547][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.548][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.549][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:48.550][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:48.550][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.551][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.553][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.553][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.554][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.556][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.556][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.557][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.558][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.559][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.560][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.561][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.562][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.563][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.565][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.565][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.566][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.568][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.568][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.569][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.570][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.571][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.572][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.574][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.575][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.577][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.578][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.580][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:48.581][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:48.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.583][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:48.584][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:48.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.586][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:48.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.596][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.600][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.602][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.615][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.618][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.621][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.643][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.646][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.649][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.671][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.674][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.677][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.680][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:48.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:48.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.683][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:48.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:48.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:48.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:48.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:48.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:48.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.693][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:48.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:48.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.696][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:48.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:48.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.703][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:04:48.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.720][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.723][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.732][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.756][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.759][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.775][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.778][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.780][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:48.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:48.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.783][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:48.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:48.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.786][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:48.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:48.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.790][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:48.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:48.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.793][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.796][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.799][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:48.800][private$selectFields]
biodb.TRACE[2025-04-12 16:04:48.800][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:48.801][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:48.802][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:48.803][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.805][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.806][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.811][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.812][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.814][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.815][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.817][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.818][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.819][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.820][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.821][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.822][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.823][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.824][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.825][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.826][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.827][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.829][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.830][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.832][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:48.833][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:48.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.835][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:48.835][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:48.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.837][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.838][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.840][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.841][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.842][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.843][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.844][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.845][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.849][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.850][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.852][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.853][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.854][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.855][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.856][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.857][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.858][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.859][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:48.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.860][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.861][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.862][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.864][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.865][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.866][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.867][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.868][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.870][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:48.871][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:48.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.873][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.873][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:48.874][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:48.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.876][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.876][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.877][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:48.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.879][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:48.880][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:48.881][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.881][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.883][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.885][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.886][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.887][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.891][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.892][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.904][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.905][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.906][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.908][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.909][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.910][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.911][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.912][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.914][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.915][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.918][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.920][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.921][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:48.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.922][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.923][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:48.924][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:48.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.925][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.926][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:48.927][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:48.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.929][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:48.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:48.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:48.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.939][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.942][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.946][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:48.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:48.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.961][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:48.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:48.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:48.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:48.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:48.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:48.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.008][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.011][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.020][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.024][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.030][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.047][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:04:49.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:49.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:49.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:49.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:49.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.064][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:49.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:49.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.067][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:49.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:49.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.076][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:49.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:49.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.079][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:49.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:49.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:49.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:49.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:49.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:49.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.096][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.099][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.115][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.118][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.130][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.133][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.136][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.140][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:49.140][private$selectFields]
biodb.TRACE[2025-04-12 16:04:49.141][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:49.142][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:49.143][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:49.143][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:49.144][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:49.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.146][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.147][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:49.147][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:49.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.149][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.150][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.151][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.153][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:49.154][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:49.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.155][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.156][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:49.157][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:49.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.158][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.159][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.160][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.162][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.163][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.164][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.165][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.166][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.168][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.169][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.171][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.172][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.174][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.175][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.177][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.177][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.178][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.179][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.180][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.181][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.182][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.183][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:49.184][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:49.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.186][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.186][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:49.187][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:49.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.189][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.192][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:49.193][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:49.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.195][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:49.195][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:49.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.198][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.199][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.201][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.202][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.204][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.204][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.205][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.208][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.208][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.211][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.212][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.213][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.214][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.215][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.217][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.218][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.220][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.221][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.224][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:49.225][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:49.225][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:49.226][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:49.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.228][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.228][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:49.229][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:49.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.232][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.234][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.235][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:49.236][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:49.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.238][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:49.239][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:49.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.240][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.241][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.242][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.244][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.245][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.247][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.247][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.248][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.250][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.251][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.252][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.253][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.254][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.255][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.257][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.258][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.259][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.260][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:49.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:49.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:49.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:49.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:49.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:49.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:49.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.270][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:49.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:49.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.274][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:49.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:49.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.277][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:49.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:49.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:49.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:49.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.316][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:49.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:49.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.319][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:49.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:49.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:49.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:49.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:49.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:49.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:49.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:49.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.360][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.363][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.366][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.372][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.378][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.382][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.392][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-04-12 16:04:49.393][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:49.394][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:49.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:49.408][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:49.410][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:49.411][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-12 16:04:49.413][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:49.414][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-12 16:04:49.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:49.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:49.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:49.492][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:49.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:49.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:49.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:49.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:49.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.510][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:49.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:49.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.513][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:49.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:49.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.523][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:49.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:49.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.526][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:49.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:49.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:49.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:49.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:49.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:49.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.542][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.546][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.562][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.565][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.578][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.581][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.584][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.587][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:49.588][private$selectFields]
biodb.TRACE[2025-04-12 16:04:49.589][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:49.590][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:49.591][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:49.592][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:49.593][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:49.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.595][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:49.596][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:49.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.599][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.605][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.608][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:49.609][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:49.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.611][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:49.611][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:49.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.613][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.613][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.614][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.617][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.618][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.619][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.620][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.621][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.623][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.624][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.625][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.626][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.626][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.628][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.629][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.630][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.632][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.633][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.635][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.635][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.636][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.638][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:49.639][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:49.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.641][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:49.642][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:49.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.644][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.645][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.646][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.647][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:49.648][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:49.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.650][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:49.651][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:49.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.653][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.654][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.656][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.656][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.657][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.659][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.659][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.660][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.663][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.663][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.665][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.666][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.667][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.669][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.670][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.672][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.673][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.674][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.675][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.676][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.677][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.678][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:49.679][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:49.680][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:49.681][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:49.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.683][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:49.684][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:49.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.686][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.687][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.689][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.690][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:49.691][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:49.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.692][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.693][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:49.694][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:49.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.695][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.696][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.697][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.699][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.699][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.700][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.702][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.703][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.705][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.705][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.706][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.708][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.709][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.709][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.711][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.712][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.713][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.714][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.715][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.716][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.717][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.718][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:49.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:49.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:49.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:49.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:49.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:49.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:49.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.729][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:49.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:49.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.732][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:49.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:49.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.735][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:49.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:49.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:49.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:49.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.752][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:49.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:49.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:49.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:49.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:49.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:49.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:49.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:49.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:49.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:49.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.778][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.781][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.784][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.807][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.810][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.813][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.817][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.823][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.826][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.829][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.842][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-04-12 16:04:49.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:49.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:49.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:49.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:49.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.860][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:49.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:49.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.863][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:49.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:49.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:49.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:49.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.882][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:49.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:49.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:49.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:49.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:49.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:49.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.898][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.912][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.930][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.933][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.936][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.938][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.941][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.945][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.948][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.951][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.954][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:49.954][private$selectFields]
biodb.TRACE[2025-04-12 16:04:49.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:49.956][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:49.957][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:49.958][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:49.958][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:49.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.960][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.961][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:49.962][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:49.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.963][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.964][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.966][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.967][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:49.968][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:49.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.969][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.970][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:49.971][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:49.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.972][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.973][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.974][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:49.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.976][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.977][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.977][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:49.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.979][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.980][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.980][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.982][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.983][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.984][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.985][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.986][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.987][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:49.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.988][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.989][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:49.990][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:49.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.991][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.992][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:49.993][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:49.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.994][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.995][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.996][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:49.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.998][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:49.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:50.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.001][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.001][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:50.002][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:50.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.003][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.004][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.005][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.007][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.007][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:50.008][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:50.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.010][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.011][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:50.011][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:50.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.013][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.014][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.015][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.017][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:50.018][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:50.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.020][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.021][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.023][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.024][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.024][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.026][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.027][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.028][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.029][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.030][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:50.031][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:50.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.033][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.033][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:50.034][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:50.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.036][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:50.038][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:50.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.039][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.040][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:50.041][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:50.042][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:50.043][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:50.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.044][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.045][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:50.046][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:50.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.047][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.048][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.049][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.051][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:50.052][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:50.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.055][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:50.056][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:50.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.058][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.059][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.061][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.061][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.062][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.064][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.064][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.065][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.067][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.068][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.071][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:50.072][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:50.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.074][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:50.075][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:50.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.077][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:50.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:50.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:50.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:50.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:50.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:50.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:50.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.087][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:50.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:50.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.090][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:50.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:50.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.093][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:50.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:50.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.106][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:50.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:50.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:50.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:50.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:50.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:50.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:50.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:50.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:50.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:50.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:50.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:50.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.156][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.164][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.168][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.172][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:50.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:50.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:50.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:50.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:50.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:50.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:50.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:50.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:50.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:50.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:50.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:50.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.195][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-04-12 16:04:50.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:50.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:50.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:50.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:50.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:50.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:50.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:50.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:50.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:50.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:50.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:50.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.213][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:50.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:50.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.216][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:50.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:50.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:50.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:50.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:50.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:50.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:50.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:50.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:50.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:50.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.245][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:50.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:50.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.247][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:50.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:50.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.263][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.266][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.269][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:50.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:50.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:50.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:50.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:50.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:50.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.279][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:50.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:50.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.282][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:50.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:50.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.285][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:50.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:50.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.288][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:50.289][private$selectFields]
biodb.TRACE[2025-04-12 16:04:50.290][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:50.291][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:50.292][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:04:50.292][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:50.293][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:50.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.295][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.295][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:50.296][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:50.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.297][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.299][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.299][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.301][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.302][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:50.303][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:50.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.304][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.305][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:50.306][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:50.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.307][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.308][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.309][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.311][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.311][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:50.312][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:50.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.314][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.315][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.315][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.317][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.318][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.319][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.321][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.321][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.322][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.324][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.325][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:50.326][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:50.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.327][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.328][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:50.329][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:50.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.331][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:50.332][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:50.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.333][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.334][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:50.335][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:50.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.337][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:50.338][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:50.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.340][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.341][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.344][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:50.344][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:50.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.346][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:50.347][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:50.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.349][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.350][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.351][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.353][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:50.354][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:50.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.355][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.356][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.357][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.360][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.360][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.363][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.364][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.365][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.366][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:50.367][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:50.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.369][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:50.370][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:50.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.372][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.373][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:04:50.373][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:04:50.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.376][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:50.376][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:04:50.377][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:50.378][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:50.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.380][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.381][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:50.381][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:50.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.383][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.386][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.387][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:50.388][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:50.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.389][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.390][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:50.391][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:50.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.392][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.393][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.394][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.395][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.396][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.397][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.400][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.401][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.403][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.404][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.406][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:50.407][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:50.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.408][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.409][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:50.410][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:50.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.411][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.412][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:04:50.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:50.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:50.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:50.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:50.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:50.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:50.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.422][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:50.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:50.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.426][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:50.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:50.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.429][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:50.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:50.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:50.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:50.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:50.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:50.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.453][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:50.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:50.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:50.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:50.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:50.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:50.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:50.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:50.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:50.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.496][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.499][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.502][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:50.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.505][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:50.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:50.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.508][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:50.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:50.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:50.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:50.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:50.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:50.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.519][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:50.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:50.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.522][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:50.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:50.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.529][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:04:50.530][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:50.531][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-12 16:04:50.536][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:50.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:50.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.550][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:50.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:50.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.554][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:50.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:50.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-12 16:04:50.561][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-12 16:04:50.562][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-04-12 16:04:50.564][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-04-12 16:04:50.565][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-12 16:04:50.565][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:50.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:50.567][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:50.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:50.568][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:50.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1398 ]
> 
> proc.time()
   user  system elapsed 
 57.985   3.138 186.139

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.0 RC (2025-04-04 r88126)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.13.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)