Mustafa Erhan Ozer
| Snapshot Date: 2025-04-21 13:40 -0400 (Mon, 21 Apr 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_21 |
| git_last_commit: 8259124 |
| git_last_commit_date: 2025-04-15 13:15:07 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-04-22 13:20 -0400 (Tue, 22 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4831 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" | 4573 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4599 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4553 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4570 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2139/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.8.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: SVMDO |
| Version: 1.8.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SVMDO_1.8.0.tar.gz |
| StartedAt: 2025-04-22 14:39:17 -0000 (Tue, 22 Apr 2025) |
| EndedAt: 2025-04-22 14:48:04 -0000 (Tue, 22 Apr 2025) |
| EllapsedTime: 526.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SVMDO_1.8.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck’
* using R Under development (unstable) (2025-02-19 r87757)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’ * installing *source* package ‘SVMDO’ ... ** this is package ‘SVMDO’ version ‘1.8.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 150379,9968,867,3643,10020,29929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 364,406934,89874,1649,2629,2689
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5406,92483,55699,2581,1786,9241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5329,3162,3952,581,51181,8942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7025,11231,137682,5745,64900,487
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1605,5723,80339,5162,463,1909
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1339,6932,199,7942,10243,2890
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 219,9968,50507,4860,3382,1543
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10616,2056,1595,55283,1363,54567
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123099,51649,5787,3784,8714,6868
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5538,2581,6390,4137,84239,405
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 151,6390,55340,4915,1557,411
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51024,79087,338,6199,1361,5744
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 353500,50674,6934,285362,3099,3418
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2314,358,1509,35,7350,5330
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9380,6948,4973,7421,181,205327
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2334,2984,1019,18,9414,842
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10599,2888,63931,3242,140803,55532
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84987,387,2516,1608,3586,6906
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 283120,79133,6513,1080,181,10
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407024,7287,728,4887,9572,7389
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4299,23409,53632,54577,2006,177
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2161,3155,2280,1027,197322,1340
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5962,3709,23038,5830,3551,10352
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5052,7480,80331,9507,6891,10019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4232,149775,10020,11093,4715,2785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10537,2876,1116,158,1591,5372
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5277,840,2629,391051,3145,150379
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407045,56919,8842,92935,6584,79587
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4524,3953,2638,8659,567,10379
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3552,8722,389,4669,2582,3490
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1737,8818,7942,2271,6517,5078
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1509,640,407024,406982,2260,2683
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3600,231,5286,8050,3375,2260
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5364,5261,9997,122961,4548,6319
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7157,6329,846,1071,388372,7038
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 133396,5789,7319,9919,728,11095
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29078,361,401,23236,445,1645
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4544,2696,8665,51092,26191,27010
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 203068,801,1718,2235,3162,590
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8560,5654,84693,10,9420,79796
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1361,1621,5211,6925,4594,29929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2101,3667,9420,706,1514,1373
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5331,2034,476,5095,23654,7077
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54576,6811,4726,4118,4502,3082
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7355,24147,2581,4760,56606,6715
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6715,9945,5211,653509,10874,5214
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23291,23175,567,1571,3596,1056
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 590,55967,3030,51206,64116,80201
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1992,5126,2820,2582,1393,9927
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 265,7407,2638,8642,3565,10008
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5095,2798,152926,10845,4118,55753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64116,87178,5962,4684,22796,857
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4358,10524,4878,8862,7319,155
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8675,2063,84340,3485,55034,2820
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6199,211,5971,596,1581,55486
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116519,11019,50814,56997,10135,29929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6401,6898,51167,8517,5799,4358
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54567,2053,7284,50506,7915,6715
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10686,654,1593,201305,160287,3627
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2056,6521,285362,407040,3122,1581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3710,9779,1718,33,2696,5293
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1203,1595,90480,3952,4982,6576
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 551,6382,84706,5594,7325,79158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1555,652,92483,51738,2006,2792
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 175,9559,6897,1182,3483,178
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10524,101180976,26003,3358,795,2673
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1769,1436,347,81689,5830,54476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6535,80267,26119,1950,54675,5538
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51555,574447,3113,10874,6898,335
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6183,537,119559,5798,8743,4285
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7035,2161,2146,57107,3645,7421
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 654,2308,3382,5161,54577,1392
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 599,4899,4744,406991,63899,1443
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116150,3992,6448,10128,5367,5745
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1027,1508,51085,1200,6513,5730
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1203,4594,5350,51458,9091,5837
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3416,2109,5175,55163,37,2244
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6382,9968,2641,3480,8604,801
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6342,1353,7076,6890,5443,4695
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 31,123099,162417,177,10316,22796
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7919,55503,654,15,56623,4722
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2932,27232,5713,1555,2784,19
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2309,1621,2690,5837,4704,3304
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 844,132158,155,3929,4899,3339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6775,3728,4000,55572,1621,1409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5468,2169,4285,213,54549,2990
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4311,23175,23556,5189,56945,153642
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1737,406906,63899,2992,54802,6821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2847,7056,10102,590,152926,3703
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1281,285,1027,7054,213,350
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 344,1843,824,2030,55278,3663
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1175,6948,10102,1605,406906,11232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57505,11136,131669,5442,2645,7498
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3708,5621,2235,345,1491,54901
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2787,2673,2053,3357,596,440138
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3066,197322,4015,170302,434,84342
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2064,8462,644974,51092,132158,2952
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 325,407021,6401,23369,572,7352
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6579,54968,79001,5599,2572,795
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60,100128525,2673,57678,23400,79587
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64601,84274,6390,1401,5590,79602
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55753,79776,2932,1594,1443,1789
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8639,1208,3250,79585,7390,6505
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 347411,7252,1769,1392,29880,11035
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3417,694,29880,3357,11093,55163
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 427,2157,217,51206,5256,1672
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6248,27344,123,23400,2169,23417
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7295,81033,6387,3155,27125,4232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 330,64788,5950,9409,6492,2113
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2762,4282,1351,55863,54982,3949
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6908,22901,9663,9056,116150,63874
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91647,125988,30061,3624,7325,83548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4543,55005,4035,79587,5286,407040
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6565,6774,63899,6338,25915,7347
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
136.391 2.074 162.506
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.921 | 0.034 | 2.315 | |