Mustafa Erhan Ozer
| Snapshot Date: 2025-04-21 13:40 -0400 (Mon, 21 Apr 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_21 |
| git_last_commit: 8259124 |
| git_last_commit_date: 2025-04-15 13:15:07 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-04-22 13:19 -0400 (Tue, 22 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4831 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" | 4573 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4599 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4553 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4570 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2139/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.8.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.8.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.8.0.tar.gz |
| StartedAt: 2025-04-21 22:00:51 -0400 (Mon, 21 Apr 2025) |
| EndedAt: 2025-04-21 22:02:47 -0400 (Mon, 21 Apr 2025) |
| EllapsedTime: 116.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.8.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck’
* using R version 4.5.0 RC (2025-04-04 r88126)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** this is package ‘SVMDO’ version ‘1.8.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 1468,125988,7528,389,516,2767
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64689,3122,1443,410,7385,4125
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1489,7407,2146,6786,5644,6821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1508,6338,55699,3990,160428,5830
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10857,7409,929,138050,5092,3074
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5743,9997,509,231,5188,100130015
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91942,5276,1345,729238,29880,5837
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4846,54968,8600,2804,23054,407009
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6834,471,6354,1374,1798,514
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28976,1606,155,5919,55572,339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 162417,801,241,55065,125988,496
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5618,3416,55937,8642,1244,151
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116085,10457,55270,23474,1508,3099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79661,1559,51144,401,3712,24147
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55526,3082,5291,7412,2100,2903
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5139,7386,10466,4889,1571,6720
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4547,1678,132001,113235,64601,793
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 43,23543,10059,3304,5054,9560
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1327,1471,3482,340024,6888,7275
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5825,6342,2056,4338,84275,1356
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23417,7498,3293,9420,7220,650
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 65985,2157,477,9560,5331,10644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10000,57818,10379,64116,275,2948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 886,2984,4338,134,1027,25828
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116931,664,5837,2875,1347,100128525
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9526,53345,2673,7372,6448,239
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51004,34,4724,2487,2740,6584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6715,2697,7409,3460,2538,8517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1394,5091,2100,407004,9180,2740
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5792,10423,4860,10094,27125,5595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 130589,339,6198,55024,3728,7381
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2888,5096,2646,5350,958,388585
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3062,65993,7252,3945,64116,175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3795,6897,389,10999,4128,111240474
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100,6236,84889,2348,492,2934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6788,10094,3417,3098,150,55788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2788,6718,5243,8813,10166,5274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 836,2697,629,440503,5805,92935
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64601,3351,8842,5792,2934,7157
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1075,54968,2146,5824,6938,3773
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4118,161247,4282,5346,23417,5595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3557,23054,10753,200205,79661,83985
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8813,4153,958,3667,3767,3554
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2517,407040,84705,2695,5019,4357
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2328,2646,4232,6720,8567,1028
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10891,181,23054,729230,5588,462
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8945,1678,4285,6566,200810,186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8675,1757,5950,92935,7056,3934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 665,183,6199,1734,8600,338
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5727,3174,2688,8932,1595,7466
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3728,3145,6531,6263,582,2767
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6324,3054,795,10616,2998,65993
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 842,84239,8648,1327,249,5507
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2702,3418,51555,92609,2542,2903
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7037,4282,8600,3598,654,1071
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 30061,4702,5617,115286,22820,2937
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 942,85365,9429,116150,7248,5370
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10730,846,811,1393,4149,7252
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7407,5257,3065,3507,8842,9388
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1909,84062,570,7297,55902,64788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6464,4702,22820,84334,11254,445
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54344,6789,6718,18,5702,10020
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6565,79587,7840,7919,51052,4544
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8050,7077,51608,3293,123099,22796
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10682,1524,5727,388743,3978,6513
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3087,79731,8932,6338,1524,2334
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 63892,6347,5901,80339,374291,6392
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11132,201595,216,4357,53905,388753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54210,181,1582,51548,7385,10644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7167,212,6262,8945,1444,640
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1557,5288,54658,846,85446,5184
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6576,1589,4790,4285,10135,3425
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56259,10,1363,4694,1244,479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 617,8195,5563,5592,64805,3931
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 152078,3703,92667,7841,6908,26521
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5139,84706,6678,6515,4318,3995
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2052,1353,133522,401,1493,6339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 590,821,5193,2487,10686,123263
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5364,7019,7056,795,6789,1956
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9971,3284,7056,1346,100128525,4654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4233,4544,629,5828,2632,23395
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8841,7840,6198,80222,57085,2937
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123099,3304,23474,27329,1244,4976
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3586,292,2235,104909134,6748,11213
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5053,6389,22978,55283,84987,4803
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1992,1234,347,10159,285,54658
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2539,79633,3172,2702,476,325
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 133,55343,150,55863,3663,51300
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84889,409,23654,593,6576,706
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 138050,5468,3283,2542,8659,5781
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6445,10466,5328,22852,644096,4357
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4723,11131,1608,6248,407009,1889
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4137,199,1508,6934,200186,5019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2946,3099,10874,5270,57176,1493
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1312,10295,4040,200810,60684,10857
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26235,57505,116519,344,10616,3643
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6890,1186,4128,4040,2804,255738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 583,6263,116519,133,3990,353
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4864,788,3295,10165,116931,958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 665,3099,3658,57570,51478,55937
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6888,2820,2628,2559,1353,2643
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5367,6354,376497,84557,169792,57048
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4715,123263,8604,79053,87178,9575
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 345,6890,2203,3598,1182,84947
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6718,6811,152926,85365,100529063,5515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 216,2157,790955,116228,2937,57761
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51117,8854,1813,5365,5372,3357
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6888,644096,7076,55065,1352,4925
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51167,2694,6821,10013,6387,2170
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60,9560,5595,54210,4842,84947
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1594,7471,3073,81034,650,347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2702,6720,6696,63892,7840,50943
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9409,1497,506,3242,4125,5188
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 355,1605,3685,58528,2785,64131
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4758,387082,7157,407008,65985,2712
--> return NULL...
2025-04-21 22:02:43.942 R[36188:1005823773] XType: Using static font registry.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
23.686 0.407 24.523
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.325 | 0.012 | 0.479 | |