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BioC 3.2: INSTALL report for codelink on moscato1

This page was generated on 2015-08-20 13:18:16 -0700 (Thu, 20 Aug 2015).

Package 203/1069HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
codelink 1.37.6
Diego Diez
Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/codelink
Last Changed Rev: 106726 / Revision: 107602
Last Changed Date: 2015-07-24 01:21:39 -0700 (Fri, 24 Jul 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  ERROR  ERROR  skipped 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ ERROR ] ERROR  skipped  skipped 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  ERROR  ERROR  skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  ERROR  ERROR  skipped  skipped 

Summary

Package: codelink
Version: 1.37.6
Command: C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/codelink_1.37.6.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch codelink_1.37.6.tar.gz && rm codelink_1.37.6.tar.gz
StartedAt: 2015-08-19 18:08:04 -0700 (Wed, 19 Aug 2015)
EndedAt: 2015-08-19 18:09:10 -0700 (Wed, 19 Aug 2015)
EllapsedTime: 65.2 seconds
RetCode: 1
Status:  ERROR  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/codelink_1.37.6.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch codelink_1.37.6.tar.gz && rm codelink_1.37.6.tar.gz
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 2409k    0 14356    0     0   528k      0  0:00:04 --:--:--  0:00:04  737k
100 2409k  100 2409k    0     0  49.5M      0 --:--:-- --:--:-- --:--:-- 58.8M

install for i386

* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
* installing *source* package 'codelink' ...
** R
Error in parse(outFile) : 
  D:/biocbld/bbs-3.2-bioc/tmpdir/Rtmp6Nq4JR/R.INSTALL403c573f7524/codelink/R/CodelinkSet-tools.R:51:1: unexpected input
50:                 stop("Ni is missing. Choose intensity Spot or Raw")
51: <<
    ^
ERROR: unable to collate and parse R files for package 'codelink'
* removing 'D:/biocbld/bbs-3.2-bioc/R/library/codelink'
* restoring previous 'D:/biocbld/bbs-3.2-bioc/R/library/codelink'
Warning: running command 'D:/biocbld/bbs-3.2-bioc/R/bin/i386/Rcmd.exe INSTALL codelink_1.37.6.tar.gz --no-multiarch' had status 1