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BioC 3.2: BUILD report for codelink on moscato1

This page was generated on 2015-08-20 13:18:17 -0700 (Thu, 20 Aug 2015).

Package 203/1069HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
codelink 1.37.6
Diego Diez
Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/codelink
Last Changed Rev: 106726 / Revision: 107602
Last Changed Date: 2015-07-24 01:21:39 -0700 (Fri, 24 Jul 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  ERROR  ERROR  skipped 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  ERROR [ ERROR ] skipped  skipped 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  ERROR  ERROR  skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  ERROR  ERROR  skipped  skipped 

Summary

Package: codelink
Version: 1.37.6
Command: chmod a+r codelink -R && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data codelink
StartedAt: 2015-08-19 19:39:26 -0700 (Wed, 19 Aug 2015)
EndedAt: 2015-08-19 19:39:35 -0700 (Wed, 19 Aug 2015)
EllapsedTime: 9.0 seconds
RetCode: 1
Status:  ERROR  
PackageFile: codelink_1.37.6.tar.gz
PackageFileSize: 2.353 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r codelink -R && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data codelink
###
##############################################################################
##############################################################################


* checking for file 'codelink/DESCRIPTION' ... OK
* preparing 'codelink':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
Warning: running command '"D:/biocbld/bbs-3.2-bioc/R/bin/x64/Rcmd.exe" INSTALL -l "D:\biocbld\bbs-3.2-bioc\tmpdir\Rtmpcp6R0X\Rinst301416b446ab" --no-multiarch "D:/biocbld/bbs-3.2-bioc/tmpdir/Rtmpcp6R0X/Rbuild3014379b3628/codelink"' had status 1
      -----------------------------------
* installing *source* package 'codelink' ...
** R
Error in parse(outFile) : 
  D:/biocbld/bbs-3.2-bioc/tmpdir/Rtmpcp6R0X/Rbuild3014379b3628/codelink/R/CodelinkSet-tools.R:51:1: unexpected input
50:                 stop("Ni is missing. Choose intensity Spot or Raw")
51: <<
    ^
ERROR: unable to collate and parse R files for package 'codelink'
* removing 'D:/biocbld/bbs-3.2-bioc/tmpdir/Rtmpcp6R0X/Rinst301416b446ab/codelink'
      -----------------------------------
ERROR: package installation failed