See download stats for: Bioconductor annotation packages Bioconductor experiment packages Bioconductor workflow packages

Download stats for Bioconductor software packages

This page was generated on 2025-04-01 06:59:36 -0400 (Tue, 01 Apr 2025).

The number reported next to each package name is the download score, that is, the average number of distinct IPs that “hit” the package each month for the last 12 months (not counting the current month).

Top 75

1	BiocVersion (60289)
2	BiocGenerics (57651)
3	S4Vectors (55363)
4	GenomeInfoDb (55184)
5	IRanges (54710)
6	zlibbioc (53833)
7	Biobase (49813)
8	XVector (49778)
9	Biostrings (48085)
10	GenomicRanges (45015)
11	DelayedArray (42239)
12	BiocParallel (41851)
13	MatrixGenerics (41620)
14	SparseArray (41459)
15	SummarizedExperiment (40333)
16	S4Arrays (40188)
17	AnnotationDbi (36370)
18	KEGGREST (36282)
19	limma (34723)
20	UCSC.utils (34547)
21	BiocFileCache (25734)
22	Rhtslib (23887)
23	edgeR (23613)
24	Rsamtools (23478)
25	Rhdf5lib (22944)

26	GenomicAlignments (22785)
27	ggtree (22155)
28	DESeq2 (22082)
29	treeio (21883)
30	biomaRt (21662)
31	clusterProfiler (21005)
32	rhdf5 (20790)
33	rtracklayer (20253)
34	enrichplot (20202)
35	rhdf5filters (20169)
36	fgsea (19952)
37	DOSE (19701)
38	BiocIO (19453)
39	graph (19312)
40	GOSemSim (19102)
41	qvalue (18923)
42	GenomicFeatures (17997)
43	annotate (17039)
44	SingleCellExperiment (16103)
45	DelayedMatrixStats (16001)
46	ComplexHeatmap (15950)
47	beachmat (15639)
48	sparseMatrixStats (15464)
49	BSgenome (15383)
50	HDF5Array (14601)

51	preprocessCore (14249)
52	BiocSingular (12659)
53	ScaledMatrix (12436)
54	multtest (11866)
55	genefilter (11650)
56	AnnotationHub (11468)
57	VariantAnnotation (11334)
58	ProtGenerics (11309)
59	BiocNeighbors (10855)
60	AnnotationFilter (10816)
61	impute (10564)
62	GEOquery (9775)
63	ensembldb (9590)
64	scuttle (9119)
65	Rgraphviz (9114)
66	RBGL (9090)
67	GSEABase (8791)
68	affyio (7856)
69	affy (7742)
70	ExperimentHub (7671)
71	sva (7374)
72	GSVA (7282)
73	scater (7005)
74	BiocBaseUtils (6728)
75	MultiAssayExperiment (6220)

All software packages

All software package stats in one file: bioc_pkg_stats.tab

All software package download scores in one file: bioc_pkg_scores.tab

See Download stats for Bioconductor software repository (all packages combined)

A

	a4 (160)
	a4Base (183)
	a4Classif (156)
	a4Core (190)
	a4Preproc (183)
	a4Reporting (153)
	aads.rnai (1)
	AAVess (1)
	ABAData (1)
	ABAEnrichment (36)
	abaenrichment (0)
	ABarray (160)
	abc (0)
	abc.data (1)
	abe (0)
	ABHgenotypeR (1)
	abif (1)
	abind (46)
	abseqR (107)
	ABSOLUTE (1)
	ABSSeq (173)
	acde (128)
	ACE (135)
	ace.fma (1)
	acepack (1)
	aCGH (228)
	ACME (174)
	ACTIONet (1)
	ActivePathways (1)
	actuar (1)
	ada (1)
	adabag (0)
	ADaCGH2 (146)
	ADAM (193)
	ADAMgui (107)
	ADAPT (29)
	adaptest (13)
	AdaptGauss (1)
	adbcdrivermanager (1)
	adductData (0)
	adductomicsR (103)
	ade4 (2)
	adegenet (1)
	adegraphics (0)
	adehabitat (1)
	adehabitatLT (1)
	adephylo (0)
	ADGofTest (0)
	ADImpute (113)
	aditools (0)
	adjustedCurves (0)
	admiral (2)
	admiral.test (0)
	admiraldev (2)
	admiralonco (1)
	admiralophtha (1)
	admiralroche (1)
	admisc (6)
	admixtools (0)
	ADMM (0)
	adSplit (146)
	adverSCarial (79)
	AER (1)
	afex (2)
	affio (0)
	AffiXcan (101)
	affxparser (1561)
	affy (7742)
	Affy (1)
	affycomp (169)
	AffyCompatible (72)
	affyContam (166)
	affycoretools (397)
	affydata (5)
	AffyExpress (59)
	affyILM (149)
	affyio (7856)
	affylmGUI (170)
	affyPara (58)
	affypdnn (56)
	affyPLM (940)
	affyplm (0)
	affyQCReport (64)
	AffyRNADegradation (133)
	AffyTiling (41)
	AGDEX (134)
	aggregateBioVar (109)
	aggregation (0)
	AGHmatrix (0)
	Agi4x44PreProcess (21)
	agilp (149)
	AgiMicroRna (199)
	agricolae (11)
	agridat (1)
	AHMassBank (86)
	AICcmodavg (0)
	aigoraFitMini (1)
	AIMS (358)
	AIPW (0)
	airpart (106)
	airr (1)
	airway (1)
	akima (0)
	alabama (0)
	alabaster (92)
	alabaster.base (3136)
	alabaster.bumpy (97)
	alabaster.files (78)
	alabaster.mae (100)
	alabaster.matrix (3134)
	alabaster.ranges (3005)
	alabaster.sce (1023)
	alabaster.schemas (2808)
	alabaster.se (2926)
	alabaster.sfe (3)
	alabaster.spatial (101)
	alabaster.string (103)
	alabaster.vcf (100)
	alakazam (1)
	ald (0)
	ALDEx2 (1210)
	aldvmm (1)
	alembic (0)
	alevinQC (126)
	AlgDesign (4)
	alkahest.generic (0)
	ALL (11)
	AllelicImbalance (155)

	alluvial (0)
	almanac (0)
	AlphaBeta (97)
	alphahull (0)
	AlphaMissenseR (85)
	alphashape3d (0)
	AlphaSimR (1)
	alphavantager (1)
	alpine (42)
	ALPS (12)
	AlpsNMR (122)
	alr3 (1)
	alr4 (0)
	alsace (41)
	altair (0)
	altcdfenvs (158)
	amap (1)
	AMARETTO (196)
	ambient (0)
	Amelia (3)
	AmesHousing (0)
	amgen.okta.client (0)
	amgsafetyvis (1)
	amlogger (0)
	AMOUNTAIN (113)
	amplican (129)
	ampliQueso (35)
	AnalysisPageServer (30)
	anamiR (15)
	Anaquin (109)
	ANCOMBC (1234)
	ANCOMBCs (1)
	Andromeda (1)
	AneuFinder (142)
	aneufinder (0)
	AneuFinderData (0)
	aneufinderdata (0)
	ANF (111)
	angrycell (0)
	animalcules (248)
	animation (1)
	annaffy (296)
	AnnBuilder (11)
	annbuilder (0)
	anndata (1)
	annmap (120)
	AnnoProbe (1)
	annotate (17039)
	annotation (0)
	AnnotationDbi (36370)
	annotationdbi (1)
	annotationDBI (1)
	AnnotationFilter (10816)
	AnnotationForge (1965)
	AnnotationFuncs (49)
	AnnotationHub (11468)
	annotationhub (1)
	AnnotationHubData (326)
	annotationTools (159)
	annotatr (463)
	anota (141)
	anota2seq (123)
	anRichment (0)
	antaresProcessing (1)
	anticlust (0)
	antiProfiles (126)
	AnVIL (505)
	AnVILAz (52)
	AnVILBase (127)
	AnVILBilling (89)
	AnVILGCP (57)
	AnVILPublish (100)
	AnVILWorkflow (81)
	anytime (13)
	aod (1)
	APAlyzer (118)
	apcluster (1)
	apComplex (144)
	APCtools (0)
	ape (56)
	apeglm (3683)
	apexcharter (1)
	APL (182)
	apLCMS (1)
	aplot (39)
	appgen (0)
	applera (3)
	appreci8R (103)
	aqp (0)
	archive (2)
	ArchR (1)
	argparse (10)
	argparser (1)
	argus.DS.Credentials (2)
	argusDS.apc.utils (3)
	argusDS.backtesting.engine (2)
	argusDS.data (3)
	argusDS.data.engineering (1)
	argusDS.data.preparation (1)
	argusDS.data.preparation2 (3)
	argusDS.data.visualisation (0)
	argusDS.database (2)
	argusDS.DataValidation (1)
	argusDS.DB.manager.utilities (1)
	argusDS.distributions (0)
	argusDS.driver.importance (2)
	argusDS.FCUtilities (1)
	argusDS.FZ.SourceData (0)
	argusDS.FZ.utils (1)
	argusDS.gamboostLSS (0)
	argusDS.gamlss.distributions (1)
	argusDS.gamlss.forecast (2)
	argusDS.gamlss.modelling (3)
	argusDS.gamlss.smoothers (0)
	argusDS.gamlss.testing (3)
	argusDS.gamlss.utils (2)
	argusDS.GlobalSettings (1)
	argusDS.model.testing (1)
	argusDS.model.tools (3)
	argusDS.model.validation (0)
	argusDS.modeldb (1)
	argusDS.possibility.curves.daily (1)
	argusDS.PossibilityCurves.db.utils (3)
	argusDS.PossibilityCurves.utils (1)
	argusDS.S3 (2)
	argusDS.shiny.utils (1)
	argusDS.signal.backtesting (1)
	argusDS.signal.dataprep (2)

	argusDS.signal.generation (1)
	argusDS.smoothers (0)
	argusDS.spread.trading.utils (2)
	argusDS.Studio.APC (0)
	argusDS.Studio.FC (0)
	argusDS.studio.ml (1)
	argusDS.studio.model.utils (1)
	argusDS.Studio.MyStudio (2)
	argusDS.Studio.permissions (3)
	argusDS.Studio.utils (2)
	argusDS.studio.visualisations (1)
	argusDS.tabulator (3)
	argusDS.trading.optimization (1)
	argusDS.trading.performance (1)
	argusDS.TradingSignals (1)
	argusDS.UI (2)
	argusDS.utilities (1)
	aricode (1)
	arkdb (1)
	arm (4)
	aroma.affymetrix (8)
	aroma.apd (9)
	aroma.core (8)
	aroma.light (1827)
	arpr (1)
	ArrayExpress (425)
	arrayexpress (0)
	ArrayExpressHTS (50)
	arrayhelpers (0)
	arrayMagic (9)
	arrayMvout (137)
	arrayop (0)
	arrayQCplot (3)
	arrayQuality (227)
	arrayQualityMetrics (461)
	arrayqualitymetrics (0)
	ArrayTools (57)
	ArrayTV (41)
	ARRmData (0)
	ARRmNormalization (128)
	arrow (19)
	arsenal (1)
	artMS (122)
	arules (1)
	ArvadosR (1)
	ASAFE (97)
	ASCAT (1)
	ascii (1)
	asciicast (1)
	ASEB (125)
	ASExtras4 (0)
	AsgntDAMacro (1)
	ASGSCA (121)
	ash (6)
	ashr (1)
	asht (0)
	ASICS (136)
	AsioHeaders (4)
	askpass (141)
	ASMap (1)
	asmn (7)
	asnipe (0)
	ASpediaFI (20)
	ASpli (143)
	asremlPlus (0)
	assert (0)
	assertive (1)
	assertive.base (1)
	assertive.code (1)
	assertive.data (1)
	assertive.data.uk (1)
	assertive.data.us (1)
	assertive.datetimes (1)
	assertive.files (1)
	assertive.matrices (1)
	assertive.models (1)
	assertive.numbers (1)
	assertive.properties (1)
	assertive.reflection (1)
	assertive.sets (1)
	assertive.strings (1)
	assertive.types (1)
	assertr (1)
	assertthat (2)
	AssessORF (188)
	ASSET (155)
	ASSIGN (158)
	assorthead (4782)
	AssotesteR (0)
	astsa (0)
	ASURAT (99)
	async (1)
	ATACCoGAPS (51)
	ATACseqQC (391)
	ATACseqTFEA (91)
	ATE (1)
	atena (98)
	AtlasRDF (25)
	ATR (0)
	atSNP (121)
	attachment (1)
	attempt (1)
	attract (149)
	AUC (1)
	AUCell (2573)
	audio (1)
	audited (1)
	auth0 (1)
	automap (3)
	autometric (1)
	autonomics (93)
	autoslideR (1)
	Autotuner (11)
	av (1)
	ava2 (1)
	AWFisher (104)
	aws (1)
	aws.ec2metadata (0)
	aws.s3 (6)
	aws.signature (6)
	awsMethods (1)
	awst (93)
	azcore (1)
	Azimuth (0)
	AzureAuth (0)
	AzureGraph (3)
	AzureRMR (3)
	AzureStor (0)

B

	b64 (1)
	BaalChIP (117)
	babelgene (6)
	babelmixr2 (1)
	babelwhale (0)
	babynames (0)
	BAC (51)
	backports (130)
	bacon (176)
	bacr (0)
	BADER (131)
	badger (1)
	badminton (1)
	BadRegionFinder (110)
	BAGS (136)
	baguette (0)
	bain (1)
	BalancedSampling (0)
	ballgown (554)
	bambu (297)
	bamsignals (964)
	BANDITS (122)
	bandle (95)
	Banksy (216)
	banocc (118)
	barcodetrackR (94)
	BART (0)
	bartMachine (0)
	bartMachineJARs (0)
	BARTools (1)
	base (1)
	base2grob (1)
	base64 (3)
	base64enc (1)
	base64url (0)
	basecallQC (113)
	basefun (0)
	basemaps (1)
	BaseSpaceR (136)
	Basic4Cseq (135)
	BASiCS (156)
	BASiCStan (117)
	BasicSTARRseq (107)
	basilisk (3294)
	basilisk.utils (3188)
	batchelor (3915)
	BatchJobs (0)
	BatchQC (155)
	batchtools (0)
	battenberg (0)
	BayesFactor (2)
	BayesFM (0)
	BayesianTools (0)
	BayesKnockdown (103)
	bayesm (1)
	BayesMendel (1)
	bayesmeta (0)
	BayesPeak (49)
	bayespeak (0)
	BayesPen (0)
	bayesplot (8)
	BayesPostEst (1)
	bayesQR (0)
	BayesSpace (283)
	bayestestR (12)
	BayesX (0)
	bayNorm (129)
	baySeq (464)
	bayseq (1)
	BB (1)
	BBCAnalyzer (119)
	BBmisc (1)
	bbmle (9)
	bbotk (1)
	bbr (1)
	bbr.bayes (1)
	bccaEndometrial (1)
	BCEE (0)
	bcellViper (0)
	bcp (0)
	BCRANK (153)
	BCS.OptimizedDesignsForPrism (1)
	BCS.RSB (1)
	bcSeq (105)
	BDgraph (0)
	BDMMAcorrect (35)
	bdsmatrix (12)
	BE (1)
	beachmat (15639)
	beachmat.hdf5 (134)
	beachmat.tiledb (20)
	beadarray (652)
	beadarraySNP (75)
	BeadDataPackR (548)
	BeadExplorer (7)
	beanplot (1)
	BEARscc (74)
	BEAT (129)
	beaver (1)
	BEclear (134)
	bedbaser (11)
	bedr (0)
	beepr (1)
	beer (96)
	beeswarm (1)
	bench (0)
	benchdamic (97)
	benchmarkme (0)
	benchmarkmeData (0)
	benchr (0)
	BentoBox (0)
	berryFunctions (0)
	BERT (73)
	Bessel (0)
	bestglm (0)
	bestNormalize (2)
	betaHMM (70)
	betareg (1)
	betr (46)
	bettermc (1)
	bettr (71)
	BeviMed (0)
	bezier (0)
	BFpack (1)
	BG2 (84)
	bgafun (52)
	BgeeCall (88)
	BgeeDB (157)
	BGLR (2)
	BGmix (45)
	bgs.ggtheme (1)
	bgs.hephaistos (1)
	bgs.hermes (1)
	bgx (114)
	BH (207)
	BHC (86)
	BIApylon (1)
	BiasedUrn (8)
	BIAutils (1)
	bib2df (1)
	bibliometrix (1)
	bibtex (1)
	BicARE (165)

	biclust (0)
	BIEN (1)
	bife (0)
	BiFET (111)
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	bigassertr (0)
	bigD (18)
	bigdist (0)
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	biglm (4)
	biglmm (0)
	bigmelon (119)
	bigmemory (3)
	bigmemory.sri (3)
	bigmemoryExtras (40)
	bigparallelr (0)
	bigPint (28)
	bigreadr (0)
	bigrquery (9)
	bigsnpr (0)
	bigsparser (1)
	bigstatsr (1)
	bigutils (0)
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	billboarder (7)
	bim (5)
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	BinaryTrial (1)
	binb (1)
	BindingSiteFinder (95)
	bindr (1)
	bindrcpp (1)
	binGroup (0)
	binman (2)
	binom (0)
	binr (0)
	bio3d (2)
	bioassayR (135)
	biobank (1)
	Biobase (49813)
	biobase (1)
	BioBase (1)
	biobroom (255)
	biobtreeR (86)
	bioc::GenomeInfoDbData (0)
	bioCancer (118)
	BioCartaImage (77)
	BiocBaseUtils (6728)
	BiocBook (98)
	BiocBookDemo (3)
	BiocCaseStudies (58)
	BiocCheck (1633)
	biocDatasets (10)
	BiocDockerManager (17)
	BiocFHIR (87)
	BiocFileCache (25734)
	BiocFileCaches (1)
	BiocGenerics (57651)
	BioCGenerics (0)
	biocGraph (263)
	BiocHail (51)
	BiocHubsShiny (119)
	BiocInstaller (211)
	biocinstaller (1)
	Biocinstaller (1)
	BiocInstallerf (0)
	BiocIO (19453)
	biocmake (15)
	BiocManager (357)
	biocmanager (0)
	BiocNeighbors (10855)
	biocneighbors (0)
	BiocOncoTK (68)
	Bioconductor (0)
	bioconductor (0)
	bioconductor-geomxtools (0)
	BioCor (120)
	BiocParallel (41851)
	BiocPkgTools (169)
	biocroxytest (80)
	BiocSet (348)
	BiocSingular (12659)
	BiocSklearn (129)
	BiocStyle (5412)
	biocthis (263)
	BiocVersion (60289)
	biocversion (2)
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	bioDist (280)
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	BioGA (49)
	BioGenerics (0)
	Biogenerics (0)
	BioInstaller (1)
	biom (0)
	biomanager (0)
	BioManager (1)
	BioMarks.ProteomeR (1)
	biomaRt (21662)
	biomart (1)
	biomartr (1)
	BioMedR (5)
	biomformat (5521)
	BioMM (22)
	biomod2 (1)
	BioMVCClass (147)
	biomvRCNS (133)
	BioNAR (107)
	BioNERO (257)
	BioNet (275)
	BioNetStat (68)
	BioPlex (8)
	BioQC (163)
	BioSeqClass (51)
	biosigner (133)
	biostat3 (0)
	biostatR (0)
	biostatUtil (0)
	Biostring (0)
	Biostrings (48085)
	biostrings (1)
	biosvd (42)
	BioTIP (113)
	biotmle (112)
	biotools (0)
	BioVersion (1)
	biovizBase (5001)
	BiplotML (1)

	BiRewire (209)
	birta (45)
	birte (27)
	biscuiteer (111)
	biscuiteerData (0)
	BiSeq (146)
	bit (135)
	bit64 (112)
	bitops (116)
	BitSeq (59)
	bizdays (2)
	bkbutils (1)
	blacksheepr (108)
	bladderbatch (0)
	BlakerCI (0)
	blastula (0)
	blavaan (1)
	blima (126)
	BLMA (117)
	blme (6)
	blob (35)
	blockcluster (0)
	blockCV (1)
	blockForest (1)
	blockmodeling (1)
	blocksdesign (1)
	blogdown (0)
	BloodCancerMultiOmics2017 (1)
	BloodGen3Module (136)
	bluster (5595)
	BlythStillCasellaCI (1)
	BMA (1)
	bmcite.SeuratData (0)
	BMisc (0)
	BMix (1)
	bmp (0)
	bmspal (1)
	bnbc (201)
	bnem (97)
	bnlearn (2)
	BOBaFIT (93)
	BOIN (0)
	bold (2)
	bonemarrowref.SeuratData (1)
	bonsai (1)
	bookdown (28)
	Boom (1)
	boomer (1)
	BoomSpikeSlab (1)
	boot (85)
	bootstrap (0)
	borealis (93)
	Boruta (1)
	botor (1)
	box (9)
	box.linters (1)
	BPCells (1)
	bpcp (0)
	BPRMeth (125)
	BPSC (1)
	bRacatus (1)
	BradleyTerry2 (0)
	BRAIN (179)
	brainflowprobes (37)
	brainImageR (6)
	BrainSABER (15)
	BrainStars (47)
	branchpointer (128)
	brave (0)
	breakpointR (111)
	breakpointRdata (0)
	brendaDb (102)
	brew (28)
	BREW3R.r (70)
	BRGenomics (69)
	brglm (0)
	brglm2 (1)
	bricks (0)
	brickster (0)
	bridge (57)
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	snpStats (2056)
	SOAR (0)
	sodium (4)
	softImpute (1)
	soGGi (378)
	soilDB (0)
	soiltexture (1)
	sojourner (20)
	solrium (0)
	solvebio (1)
	som (1)
	SomaDataIO (3)
	SomatiCA (28)
	SomaticSignatures (198)
	SomaVarDB (0)
	SOMbrero (1)
	sommer (2)
	SOMNiBUS (83)
	sortable (2)
	sos (1)
	sosta (20)
	soundecology (0)
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	sp (61)
	spacefillr (1)
	SpaceMarkers (70)
	SpacePAC (111)
	spacetime (2)
	spacexr (1)
	SPACox (0)
	spacrt (1)
	spade (31)
	spam (13)
	spam64 (0)
	spaMM (0)
	Spaniel (115)
	SpaNorm (42)
	sparkline (0)
	sparklyr (8)
	SPARQL (1)
	sparr (1)
	sparrow (363)
	SparseArray (41459)
	sparsebn (1)
	sparsebnUtils (1)
	sparseDOSSA (36)
	SparseGrid (0)
	SparseM (64)
	sparseMatrixStats (15464)
	sparsematrixstats (2)
	sparsenetgls (90)
	sparsepca (0)
	SparseSignatures (106)
	sparsesvd (13)
	sparsevctrs (1)
	spaSim (92)
	spatial (24)
	SpatialCPie (119)
	spatialDE (131)
	SpatialDecon (223)
	SpatialEpi (0)

	SpatialExperiment (4765)
	spatialexperiment (1)
	SpatialExperimentIO (20)
	spatialFDA (19)
	SpatialFeatureExperiment (206)
	spatialHeatmap (220)
	SpatialOmicsOverlay (98)
	SpatialPack (1)
	spatialreg (0)
	spatialSimGP (34)
	SpATS (1)
	spatstat (5)
	spatstat.core (9)
	spatstat.data (26)
	spatstat.explore (35)
	spatstat.geom (36)
	spatstat.linnet (5)
	spatstat.model (5)
	spatstat.random (33)
	spatstat.sparse (22)
	spatstat.univar (5)
	spatstat.utils (30)
	spatsurv (0)
	spatzie (82)
	spd (0)
	spData (7)
	spdata (1)
	spdep (5)
	spec (1)
	speckle (250)
	specL (123)
	SpeCond (144)
	spectacles (0)
	Spectra (1832)
	SpectralTAD (117)
	SpectraQL (39)
	SpectraVis (1)
	speedglm (0)
	SPEI (0)
	spelling (3)
	SPEM (147)
	spgs (0)
	SPIA (577)
	SPIAT (153)
	spicyR (195)
	SpidermiR (42)
	SpiecEasi (1)
	spikeLI (117)
	spiky (86)
	spillR (75)
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	splancs (11)
	splatter (443)
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	splicegear (54)
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	SpliceWiz (152)
	SplicingFactory (85)
	SplicingGraphs (147)
	SplineDV (23)
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	splines2 (1)
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	splots (208)
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	sscore (71)
	sscu (102)
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	ssh (4)
	ssh.utils (0)
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	ssPATHS (93)
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	stable (1)
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	stdReg (0)
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	sticky (0)
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	stJoincount (97)
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	storr (0)
	strandannotate (1)
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	stringdist (12)
	stringfish (5)
	stringi (319)
	stringr (83)
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	strucchange (1)
	struct (162)
	Structstrings (128)
	structToolbox (149)
	StructuralVariantAnnotation (221)
	structuralvariantannotation (0)
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	subplex (1)
	subselect (0)
	subSeq (129)
	SUITOR (78)
	SummarizedBenchmark (37)
	SummarizedExperiment (40333)
	summarizedExperiment (1)
	summarytools (1)
	Summix (86)
	sunburstR (0)
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	superpc (0)
	supersigs (175)
	SuppDists (4)
	supraHex (365)
	surfaltr (88)
	SurfR (64)
	survClust (49)
	survcomp (1339)
	surveillance (1)
	survex (0)
	survey (5)
	survival (235)
	survivalROC (1)
	SurvMetrics (1)
	survminer (7)
	survMisc (1)
	survMS (0)
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	survtmle (1)
	survtype (97)
	Sushi (74)
	susieR (14)
	sva (7374)
	svaNUMT (89)
	SVAPLSseq (14)
	svaRetro (91)
	svd (2)
	svDialogs (1)
	svglite (16)
	svGUI (0)
	SVM2CRM (28)
	SVMDO (92)
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	SVP (3)
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	SWATH2stats (113)
	SwathXtend (104)
	swfdr (111)
	Swiffer (1)
	SwimR (34)
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	switchBox (145)
	switchde (103)
	switchstep (1)
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	sybilGUROBI (0)
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	symengine (1)
	symphony (0)
	synapser (1)
	synapsis (83)
	synapter (180)
	synbreed (0)
	synergyfinder (250)
	SynExtend (100)
	synlet (112)
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	syntenet (132)
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	systemfonts (243)
	systemPipeR (1203)
	systempiper (1)
	systemPipeRdata (0)
	systemPipeShiny (103)
	systemPipeTools (94)
	syuzhet (0)

T

	table1 (3)
	tableHTML (1)
	tableone (0)
	tables (1)
	tabulapdf (1)
	tabulizer (1)
	tabulizerjars (1)
	tadar (85)
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	TAPseq (104)
	tarchetypes (4)
	target (100)
	TargetDecoy (102)
	targets (8)
	TargetScore (135)
	TargetSearch (137)
	targetsearch (0)
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	taskscheduleR (1)
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	taxadb (1)
	taxize (2)
	taxonomizr (0)
	taylor (1)
	TBSignatureProfiler (93)
	TCC (266)
	TCCGUI (1)
	TCGAbiolinks (4655)
	TCGAbiolinksGUI (35)
	TCGAbiolinksGUI.data (1)
	TCGAplot (1)
	TCGAutils (676)
	tcltk (1)
	tcltk2 (1)
	tclust (1)
	TCseq (518)
	TDARACNE (52)
	TDbasedUFE (89)
	TDbasedUFEadv (89)
	TeachingDemos (2)
	teal (2)
	teal.builder (1)
	teal.builder.checks (1)
	teal.builder.modules (1)
	teal.code (2)
	teal.data (3)
	teal.goshawk (1)
	teal.logger (3)
	teal.modules.clinical (1)
	teal.modules.general (1)
	teal.modules.sanofi (1)
	teal.osprey (1)
	teal.reporter (2)
	teal.slice (3)
	teal.transform (1)
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	TEKRABber (175)
	templater (1)
	TENET (3)
	tensor (1)
	tensorA (8)
	tensorflow (8)
	TENxIO (99)
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	tenXplore (88)
	TEQC (150)
	terapadog (7)
	tergm (0)
	tern (4)
	tern.gee (4)
	tern.mmrm (2)
	tern.rbmi (1)
	ternarynet (119)
	terra (25)
	terraTCGAdata (98)
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	tester (1)
	TestGenerator (1)
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	testthat (271)
	texreg (1)
	text2vec (1)
	textfeatures (1)
	textrecipes (1)
	textshape (1)
	textshaping (184)
	TFARM (101)
	tfautograph (1)
	TFBSTools (3365)
	tfbstools (1)
	tfdatasets (0)
	TFEA.ChIP (130)
	TFHAZ (100)
	TFisher (1)
	TFMPvalue (7)
	tfrmt (1)
	tfruns (8)
	tfse (1)
	TFutils (116)
	tgp (1)
	tgxWebservices (0)
	TH.data (105)
	thematic (3)
	themeSanofi (1)
	themis (0)
	this.path (1)
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	ThresholdROC (0)
	tibbke (1)
	tibble (16)
	tictoc (9)
	tidybayes (1)
	tidybulk (333)
	tidycensus (3)
	tidyclust (2)
	tidycmprsk (1)
	tidyCoverage (69)
	tidydr (0)

	tidyFlowCore (51)
	tidyfst (1)
	tidygate (1)
	tidygraph (22)
	tidyHeatmap (1)
	tidyjson (1)
	tidylog (1)
	tidymodels (11)
	tidyomics (94)
	tidyposterior (1)
	tidypredict (2)
	tidyproject (1)
	tidyproteomics (1)
	tidyquant (1)
	tidyr (206)
	tidyrules (0)
	tidysbml (41)
	tidyselect (259)
	tidySEM (1)
	tidyseurat (0)
	tidySingleCellExperiment (235)
	tidySpatialExperiment (84)
	tidySummarizedExperiment (344)
	tidytable (1)
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	tidytlg (1)
	tidytof (49)
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	tidyTree (0)
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	tidyxl (1)
	tiff (2)
	tigre (146)
	tigris (11)
	tikzDevice (1)
	tiledb (1)
	TileDBArray (113)
	tiledbsoma (1)
	tilingArray (176)
	timechange (162)
	timecourse (155)
	timeDate (34)
	timeOmics (124)
	TimeProjection (1)
	timereg (1)
	TimerQuant (0)
	timescape (111)
	timeSeries (12)
	TimeSeriesExperiment (21)
	timetk (1)
	timevis (1)
	TimiRGeN (29)
	Timma (0)
	TIN (115)
	TINC (0)
	tinkr (1)
	tinysnapshot (0)
	tinytable (1)
	tinytest (0)
	tinytex (342)
	tippy (0)
	TiPS (1)
	tis (0)
	TissueEnrich (249)
	TitanCNA (147)
	titanic (0)
	tkrgl (0)
	tkrplot (0)
	tkWidgets (1394)
	tkwidgets (1)
	tldrm (1)
	TLMoments (0)
	tLOH (87)
	tm (5)
	tmap (1)
	tmaptools (1)
	TMB (12)
	tmcn (1)
	TMixClust (126)
	tmle (3)
	TMSig (38)
	tmvnsim (1)
	tmvtnorm (1)
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	TNO (0)
	TNRS (1)
	TnT (82)
	TOAST (442)
	toastui (9)
	tofsims (23)
	tokenizers (3)
	tokupika (0)
	tolerance (0)
	tomoda (98)
	tomoseqr (84)
	tools (0)
	toOrdinal (1)
	TOP (80)
	ToPASeq (35)
	topconfects (184)
	topdownr (111)
	topGO (2737)
	topgo (0)
	topicmodels (1)
	topr (11)
	torch (1)
	tornado (0)
	tourr (1)
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	Tplyr (2)
	TPP (159)
	TPP2D (98)
	tpSVG (69)
	tracee (1)
	tracklayer (1)
	tracktables (209)
	trackViewer (606)

	trackviewer (0)
	tradeSeq (563)
	tradeseq (0)
	traits (1)
	TrajectoryGeometry (75)
	TrajectoryUtils (1901)
	tram (0)
	TraMineR (0)
	transcriptogramer (106)
	transcriptR (118)
	transformGamPoi (110)
	transformr (0)
	transite (108)
	translations (1)
	tRanslatome (217)
	transmogR (69)
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	TraRe (12)
	traseR (123)
	Travel (5)
	traviz (67)
	tree (1)
	TreeAndLeaf (150)
	treeclimbR (72)
	treeio (21883)
	treekoR (107)
	treemap (1)
	treemapify (0)
	treesitter (1)
	treesitter.r (1)
	treespace (0)
	TreeSummarizedExperiment (2084)
	TreeTools (1)
	TREG (88)
	TReNA (3)
	trena (33)
	trendeval (1)
	Trendy (105)
	TRESS (97)
	triangle (1)
	tricycle (240)
	TrIdent (17)
	triebeard (2)
	triform (48)
	trigger (139)
	trimcluster (0)
	trio (168)
	tripack (0)
	triplex (140)
	tripr (87)
	tRNA (123)
	tRNAdbImport (115)
	tRNAscanImport (107)
	TRONCO (131)
	TropFishR (1)
	trtf (0)
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	truncnorm (3)
	truncreg (0)
	trust (0)
	tryCatchLog (1)
	TSAR (70)
	tsbox (1)
	TSCAN (616)
	tscR (18)
	tseries (9)
	tseriesChaos (0)
	tsfeatures (1)
	tsibble (1)
	tsibbledata (0)
	tsModel (0)
	tsna (0)
	tsne (1)
	tsoutliers (2)
	TSP (12)
	tspair (56)
	TSRchitect (24)
	TSSi (43)
	tsvio (1)
	ttdo (0)
	ttgsea (90)
	TTMap (104)
	TTR (5)
	ttservice (1)
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	tune (11)
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	tuneRanger (1)
	TurboNorm (135)
	turner (1)
	Turnover.cells.pSILAC.TMT (1)
	TVTB (107)
	twang (3)
	twangContinuous (0)
	tweeDEseq (182)
	tweedie (0)
	tweenr (29)
	twilight (159)
	twoddpcr (104)
	TwoSampleMR (1)
	twosamples (1)
	txcutr (88)
	TxDb.Hsapiens.UCSC.hg19.knownGene (6)
	TxDb.Hsapiens.UCSC.hg38.knownGene (1)
	TxDb.Mmusculus.UCSC.mm10.ensGene (0)
	TxDb.Mmusculus.UCSC.mm10.knownGene (6)
	TxDb.Mmusculus.UCSC.mm9.knownGene (0)
	txdbmaker (3741)
	tximeta (993)
	tximport (3434)
	tximportDat (0)
	tximportData (3)
	TxRegInfra (16)
	txtq (0)
	TypeInfo (100)
	tzdb (30)

U

V

	V.PhyloMaker2 (0)
	V8 (93)
	VAExprs (84)
	validate (1)
	valr (1)
	VAM (1)
	VanillaICE (251)
	vaplot (0)
	vapour (0)
	VarCon (87)
	variables (0)
	variancePartition (924)
	VariantAnnotation (11334)
	variantannotation (1)
	VariantExperiment (80)
	VariantFiltering (141)
	VariantTools (173)
	VariantWarehouseBMS (0)
	varImp (0)
	vars (1)
	vasp (7)
	VaSP (96)
	vaultr (1)
	vbmp (160)
	VBsparsePCA (0)
	vcd (3)
	VCFArray (100)
	vcfR (1)
	vcr (0)

	vctrs (110)
	vdbR (0)
	vdiffr (1)
	VDJdive (95)
	Vega (40)
	VegaMC (126)
	vegan (35)
	vegawidget (0)
	velociraptor (178)
	velocyto.R (1)
	veloviz (85)
	vembedr (0)
	vendormetadatahelpers (0)
	venn (9)
	VennDetail (298)
	VennDiagram (1)
	venneuler (1)
	verification (1)
	VERSO (89)
	vetiver (1)
	VGAM (12)
	VGAMextra (0)
	vhydeg (0)
	VIBER (0)
	vidger (154)
	VIM (1)
	vimp (0)
	VineCopula (0)
	vioplot (1)

	vip (1)
	viper (729)
	vipor (12)
	viridis (172)
	viridisLite (34)
	viridislite (0)
	virtualArray (14)
	visdat (1)
	ViSEAGO (142)
	VISION (1)
	VisiumIO (85)
	visiumStitched (20)
	visNetwork (3)
	visOmopResults (1)
	visR (2)
	vissE (141)
	vistime (1)
	vitae (0)
	Voyager (203)
	vpc (0)
	VplotR (102)
	vroom (63)
	vscDebugger (1)
	vsclust (88)
	vsn (4898)
	vtable (1)
	vtpnet (132)
	vulcan (103)

W

	WA43966.shareR.3043877 (1)
	waddR (83)
	waffle (1)
	waiter (8)
	wakefield (0)
	waldo (176)
	wallace (1)
	warp (11)
	wateRmelon (861)
	wavClusteR (121)
	waved (1)
	waveslim (1)
	waveTiling (45)
	wdm (0)
	wdman (2)
	weaver (137)
	webbioc (143)
	webchem (1)
	webdriver (0)
	webfakes (0)
	WebGestaltR (1)
	webmockr (0)
	webp (0)
	webshot (15)

	webshot2 (2)
	websocket (23)
	webutils (2)
	WeightIt (3)
	weights (3)
	WeightSVM (0)
	weitrix (98)
	WES.1KG.WUGSC (1)
	wesanderson (1)
	WGCNA (14)
	WGScan (0)
	WGSmapp (1)
	whereami (0)
	whisker (15)
	whitening (0)
	whoami (1)
	widgetframe (1)
	widgetInvoke (7)
	widgetTools (1391)
	widgettools (1)
	wiggleplotr (177)
	WikidataQueryServiceR (0)
	WikidataR (0)
	WikipediR (5)

	wikitaxa (0)
	wildmeta (0)
	winboxr (1)
	withr (244)
	wk (28)
	wmtsa (0)
	worcs (1)
	wordcloud (0)
	wordcloud2 (0)
	workflowr (1)
	workflows (10)
	workflowsets (10)
	WorldFlora (0)
	worrms (2)
	wpm (102)
	wppi (74)
	wrapr (1)
	Wrench (1569)
	writexl (31)
	WriteXLS (4)
	wrMisc (0)
	WRS2 (2)

X

Y

	y2hStat (3)
	yaImpute (1)
	yaml (278)
	yamss (113)
	YAPSA (130)

	yaqcaffy (51)
	yardstick (15)
	yarn (142)
	ylab.utils (0)
	ymlthis (0)

	ympes (1)
	yspec (1)
	yulab.utils (57)

Z

	zCompositions (11)
	zeallot (1)
	zellkonverter (1544)
	zelusutils (1)
	zen4R (0)
	zenith (131)

	zFPKM (162)
	zinbwave (831)
	zingeR (1)
	zip (161)
	Ziploc (1)
	zitools (38)

	zli (0)
	zlibbioc (53833)
	zoo (29)
	ZygosityPredictor (78)

Stats generated by https://github.com/Bioconductor/download_stats/