Package	Download_score
pickgene	118
segmentSeq	147
a4Base	183
flowViz	941
MiPP	142
limma	34723
SeqVarTools	452
Vega	40
mzID	2945
tigre	146
rbsurv	150
globaltest	1767
trio	168
genefu	338
RDRToolbox	180
clst	131
Rsamtools	23478
mgsa	170
SimBindProfiles	64
miRNApath	123
flowMap	65
HTSFilter	229
r3Cseq	147
BayesPeak	49
cobindR	47
MassSpecWavelet	1670
spliceSites	37
webbioc	143
mzR	3166
CorMut	42
Icens	418
isobar	152
NetSAM	157
widgetTools	1391
NCIgraph	112
zlibbioc	53833
pcaMethods	5079
qcmetrics	140
SBMLR	143
RchyOptimyx	46
RbcBook1	203
SeqArray	904
ReadqPCR	230
metahdep	126
pvac	132
rfPred	125
altcdfenvs	158
gcrma	1117
PCpheno	52
beadarray	652
HTqPCR	102
easyRNASeq	178
minfi	2312
iBMQ	100
pcaGoPromoter	39
annotate	17039
BaseSpaceR	136
rqubic	148
flowPhyto	16
arrayQuality	227
splicegear	54
DynDoc	1388
GEOsubmission	137
hypergraph	184
flowFlowJo	23
cghMCR	158
ChIPXpress	113
snm	167
paircompviz	122
logicFS	156
iterativeBMA	136
CSSP	41
DeconRNASeq	305
dks	110
bioassayR	135
gaia	52
graphite	3158
bioDist	280
msmsTests	280
spotSegmentation	46
BitSeq	59
aCGH	228
REDseq	154
GeneRegionScan	148
prada	64
customProDB	153
iChip	135
ARRmNormalization	128
ExpressionView	53
macat	79
genoset	54
IdMappingRetrieval	47
PLPE	135
GeneMeta	161
flowBeads	127
ShortRead	6095
pathifier	136
spkTools	132
eisa	57
SeqGSEA	235
a4	160
ChIPseqR	161
DirichletMultinomial	4631
codelink	161
OLINgui	139
crlmm	292
AnnotationFuncs	49
TSSi	43
STRINGdb	1362
PING	141
CGHbase	380
RTopper	136
HELP	134
BioSeqClass	51
CORREP	56
multiscan	131
idiogram	141
GOSim	97
birta	45
twilight	159
CNVtools	45
minet	709
SIM	140
TypeInfo	100
biocGraph	263
maanova	75
HEM	139
triform	48
RNASeqPower	219
Repitools	310
spliceR	37
fdrame	134
Category	1506
qrqc	58
BiSeq	146
CNTools	176
GGBase	59
ChIPsim	152
MassArray	112
GWASTools	632
DriverNet	115
PADOG	323
ArrayExpress	425
ACME	174
OCplus	155
NTW	118
OLIN	154
LPE	146
DESeq	183
ArrayExpressHTS	50
PROcess	158
SAGx	63
SamSPECTRAL	182
IPPD	42
DESeq2	22082
Rdisop	441
plgem	159
ggbio	1834
quantsmooth	643
beadarraySNP	75
phyloseq	5476
ctc	288
SplicingGraphs	147
biovizBase	5001
bgafun	52
bumphunter	2583
copa	139
rama	54
h5vc	151
RDAVIDWebService	66
PECA	135
iPAC	116
xps	46
CRISPRseek	173
domainsignatures	42
geNetClassifier	162
puma	168
pdInfoBuilder	182
pcot2	63
pkgDepTools	73
eiR	129
plrs	40
seqLogo	3690
affycoretools	397
joda	47
gCMAPWeb	38
imageHTS	65
sagenhaft	129
HTSanalyzeR	51
RWebServices	24
vbmp	160
BEAT	129
trackViewer	606
COMPASS	147
scsR	39
messina	121
pxr	0
CAFE	130
Rariant	46
BiocCheck	1633
Rcpi	173
CoverageView	125
rpx	336
VariantFiltering	141
RefNet	37
viper	729
INPower	127
monocle	3348
HDTD	101
DEGreport	609
GeneGroupAnalysis	10
Ruuid	18
simulatorAPMS	13
Rdbi	17
cosmoGUI	15
rflowcyt	17
RMAGEML	11
biocDatasets	10
fbat	12
pamr	20
oposSOM	154
riboSeq	0
Pviz	125
shinyMethyl	164
missMethyl	1086
quantro	265
MSnID	315
MSGFplus	37
derfinderHelper	503
ALDEx2	1210
FourCSeq	35
GenomicTuples	120
csaw	512
derfinder	505
facopy	25
exonfindR	0
flowCHIC	126
STATegRa	126
switchBox	145
groHMM	114
IMPCdata	100
PSEA	55
paxtoolsr	109
COSNet	118
nethet	130
PROPER	148
FlowSOM	1029
AgiMicroRna	199
SNAGEE	124
metaSeq	130
clonotypeR	48
flowCore	2573
omicade4	204
SwimR	34
ProCoNA	35
PAPi	42
BufferedMatrix	138
BHC	86
CoCiteStats	140
ChemmineOB	326
prebs	126
MotifDb	581
limmaGUI	154
CGEN	128
TurboNorm	135
Roleswitch	43
EBImage	2785
ArrayTV	41
anota	141
Rgraphviz	9114
Biobase	49813
Resourcerer	23
TFBSTools	3365
PSICQUIC	53
ccrepe	181
deepSNV	187
TargetSearch	137
ENVISIONQuery	46
snpStats	2056
genomeIntervals	200
BSgenome	15383
spikeLI	117
les	134
ampliQueso	35
AffyExpress	59
MMDiff	32
lpNet	127
goseq	1434
weaver	137
OmicCircos	236
ecolitk	152
sva	7374
flowMeans	173
HilbertVisGUI	95
daMA	132
BiocCaseStudies	58
chimera	50
ontoCAT	38
GlobalAncova	979
annaffy	296
ChIPpeakAnno	985
BrainStars	47
antiProfiles	126
BiocParallel	41851
frmaTools	138
flagme	125
mBPCR	135
BCRANK	153
DFP	142
DECIPHER	2799
affy	7742
GenomeGraphs	60
AnnotationDbi	36370
coRNAi	42
TDARACNE	52
ExiMiR	132
Rbowtie	459
MLP	178
networkBMA	52
GeneticsPed	155
nucleR	157
ssize	162
PWMEnrich	214
ReportingTools	554
clstutils	132
RNAither	60
IRanges	54710
IsoGeneGUI	54
biocViews	4364
RIPSeeker	51
GRENITS	114
CAGEr	284
flowUtils	72
MLInterfaces	408
affyQCReport	64
CNORfuzzy	137
GOFunction	48
geneRecommender	136
genefilter	11650
seqCNA	59
GSVA	7282
sigPathway	71
procoil	129
fastseg	779
made4	301
Gviz	3250
cleanUpdTSeq	133
piano	401
affycomp	169
cnvGSA	136
flowTrans	156
MiChip	125
timecourse	155
genomes	140
tRanslatome	217
ASSET	155
cycle	140
BioNet	275
hyperdraw	149
cn.mops	240
affypdnn	56
SJava	21
NormqPCR	211
EDASeq	1661
gmapR	168
ChemmineR	797
ddgraph	38
Mfuzz	1390
synapter	180
PANR	128
triplex	140
keggorthology	243
CNAnorm	133
topGO	2737
AffyCompatible	72
QuasR	360
rsbml	174
iSeq	112
BioMVCClass	147
MSstats	519
GenomicFeatures	17997
CMA	197
clusterProfiler	21005
pgUtils	13
DOSE	19701
MEDME	127
KCsmart	138
BiGGR	121
ADaCGH2	146
CSAR	150
RTCA	134
ChAMP	713
CNORdt	131
Rolexa	33
UniProt.ws	470
BufferedMatrixMethods	136
MSnbase	3037
ReactomePA	2795
BicARE	165
ChromHeatMap	140
LVSmiRNA	45
ReQON	62
GLAD	225
BeadDataPackR	548
Ringo	177
MVCClass	153
RankProd	281
Agi4x44PreProcess	21
GEOmetadb	274
ITALICS	134
GeneSelectMMD	143
girafe	164
AnnotationForge	1965
tilingArray	176
rBiopaxParser	195
fabia	210
mdqc	140
wateRmelon	861
epigenomix	132
motifStack	667
mitoODE	39
cisPath	112
roar	128
illuminaio	2772
proteinProfiles	107
exomePeak	48
flowType	44
lol	37
CoGAPS	322
DEXSeq	1422
preprocessCore	14249
ensemblVEP	124
xmapcore	9
spade	31
deltaGseg	118
VariantTools	173
mmnet	31
jmosaics	26
GeneOverlap	616
COHCAP	56
asmn	7
iClusterPlus	423
Seqnames	0
CNEr	3306
MIMOSA	50
Clomial	112
unifiedWMWqPCR	92
MLSeq	180
GSCA	121
flowCL	47
DMRforPairs	54
TitanCNA	147
Sushi	74
metaMS	221
hiAnnotator	136
GSAR	157
gene2pathway	15
hexbin	37
snpMatrix	15
exonmap	14
affydata	5
cosmo	16
pairseqsim	4
GeneRfold	7
edd	20
ontoTools	20
GeneticsBase	12
ssviz	127
netbiov	58
GSReg	122
OncoSimulR	123
metabomxtr	115
methylPipe	144
RUVnormalize	125
MBASED	119
compEpiTools	125
pepStat	115
interactiveDisplayBase	4790
miRNAtap	189
SNPRelate	1696
Rnits	119
GOexpress	142
GenomicInteractions	407
polyester	126
FEM	41
regionReport	178
Rqc	306
rRDP	124
EnrichmentBrowser	524
SGSeq	319
GenoView	16
kebabs	162
proBAMr	116
mygene	354
PAA	129
tracktables	209
CFAssay	105
ASGSCA	121
CoRegNet	58
geecc	36
genomation	670
mdgsa	34
gQTLstats	37
TRONCO	131
gff3Plotter	4
arrayQCplot	3
CALIB	57
GSEAlm	152
BADER	131
openCyto	626
KEGGSOAP	23
flowWorkspace	1101
flowStats	461
RedeR	305
RpsiXML	62
EBarrays	201
DNAcopy	4786
CNVrd2	129
BiocGenerics	57651
MEDIPS	183
manta	47
rTANDEM	45
baySeq	464
rnaSeqMap	50
chopsticks	154
DNaseR	9
GGtools	65
DASiR	29
BiocInstaller	211
graph	19312
rtracklayer	20253
XVector	49778
GSRI	139
LiquidAssociation	133
logitT	66
IdMappingAnalysis	43
bgx	114
lapmix	114
RGalaxy	48
GeneGA	106
DEGseq	223
cancerclass	351
HTSeqGenie	61
stepwiseCM	38
sSeq	195
tweeDEseq	182
rols	422
CNORode	148
iASeq	114
edgeR	23613
casper	122
maCorrPlot	123
XDE	152
mosaics	223
affylmGUI	170
DrugVsDisease	165
SpacePAC	111
motifRG	45
PGSEA	91
SPEM	147
flowQ	42
SLGI	63
EBSeq	378
BRAIN	179
TargetScore	135
flowFP	189
chroGPS	49
gpls	258
Genominator	52
lumi	1210
GraphAlignment	121
MinimumDistance	153
CRImage	153
oligoClasses	1597
a4Classif	156
panp	161
explorase	44
LPEadj	73
reb	53
SSPA	116
makecdfenv	215
MotIV	61
rGADEM	371
rHVDM	51
prot2D	32
RTN	213
methVisual	47
DEDS	51
CancerMutationAnalysis	50
seqbias	65
Biostrings	48085
gage	833
TEQC	150
cellHTS	46
DART	134
RLMM	129
MantelCorr	116
ScISI	61
MBCB	129
QUALIFIER	46
bigmemoryExtras	40
maigesPack	83
ffpe	138
mcaGUI	51
PREDA	143
flowMatch	132
HiTC	197
MineICA	135
methyAnalysis	51
fmcsR	262
NuPoP	134
pdmclass	50
MiRaGE	133
GENE.E	32
rSFFreader	36
Mulcom	138
OrderedList	145
ROntoTools	198
Clonality	56
flowQB	43
ibh	123
DAVIDQuery	32
plier	178
inSilicoMerging	37
Rsubread	2128
interactiveDisplay	152
oligo	1731
iontree	36
ROC	1105
SomatiCA	28
dualKS	55
charm	57
OSAT	149
Rmagpie	141
inSilicoDb	34
VanillaICE	251
randPack	126
survcomp	1339
epivizr	169
HCsnip	35
parody	147
methylMnM	126
CGHnormaliter	140
genoCN	117
lmdme	130
microRNA	226
AffyTiling	41
GraphPAC	112
RefPlus	81
R453Plus1Toolbox	149
impute	10564
BGmix	45
netresponse	141
Cormotif	140
adSplit	146
AnnotationHub	11468
GeneSelector	48
DTA	124
LMGene	55
ASEB	125
CexoR	131
SANTA	110
SpeCond	144
AllelicImbalance	155
BiocStyle	5412
SMAP	70
PathNet	133
HybridMTest	163
RMassBank	170
affyPLM	940
cn.farms	137
simpleaffy	111
pathview	4525
splots	208
vtpnet	132
flowPeaks	199
oneChannelGUI	55
virtualArray	14
shinyTANDEM	38
rMAT	46
phenoTest	158
supraHex	365
maPredictDSC	124
cqn	315
dyebias	146
tkWidgets	1394
plateCore	46
trigger	139
biomvRCNS	133
convert	184
gwascat	606
arrayMvout	137
hopach	312
clippda	141
cellGrowth	40
nnNorm	141
SomaticSignatures	198
biosvd	42
Mirsynergy	37
DMRcate	1088
EDDA	42
sapFinder	41
massiR	125
FRGEpistasis	111
metaseqR	43
nondetects	64
npGSEA	124
gaucho	32
COPDSexualDimorphism	6
CompGO	39
ASSIGN	158
Basic4Cseq	135
ChIPseeker	1967
compcodeR	143
MeSHDbi	246
meshr	162
blima	126
flowClean	240
MethylAid	144
MoPS	29
msQC	0
wavClusteR	121
RGSEA	129
externalVector	15
GeneR	18
RdbiPgSQL	13
GeneTraffic	12
PatientGeneSets	6
GeneSpring	13
Rredland	9
cosmiq	198
DOQTL	31
flowDensity	286
MultiMed	114
keggorth	7
stam	9
ballgown	554
STAN	44
metagene	51
erccdashboard	144
systemPipeR	1203
riboSeqR	128
MSGFgui	37
seqplots	41
EBSeqHMM	55
simulatorZ	35
GOsummaries	56
IdeoViz	133
pepXMLTab	119
TSCAN	616
Metab	131
focalCall	30
AIMS	358
gespeR	89
GeneTS	8
Risa	197
GeneAnswers	60
ncdfFlow	1056
RBGL	9090
gaggle	73
GeneticsDesign	49
cummeRbund	265
rTRM	170
inveRsion	43
flipflop	36
RRHO	144
GenomicRanges	45015
chipenrich	169
a4Reporting	153
cleaver	242
SPIA	577
HilbertVis	208
sRAP	44
KEGGREST	36282
OrganismDbi	2689
pvca	282
categoryCompare	133
coGPS	129
apComplex	144
MeasurementError.cor	123
KEGGgraph	5250
SigFuge	127
DEGraph	108
maskBAD	129
TransView	101
matchBox	108
waveTiling	45
staRank	86
EasyqpcR	47
ternarynet	119
bridge	57
gaga	147
clusterStab	156
RMAPPER	16
neaGUI	25
SLqPCR	137
hpar	284
marray	1790
DBChIP	51
Rchemcpp	36
annmap	120
RmiR	50
FGNet	141
nem	64
bsseq	1402
GEWIST	110
biomaRt	21662
RPA	141
factDesign	142
HMMcopy	369
RNAinteract	90
GeneExpressionSignature	153
ABarray	160
CellNOptR	183
a4Preproc	183
affxparser	1561
flowMerge	165
pathRender	140
msmsEDA	282
affyContam	166
metaArray	59
rhdf5	20790
NarrowPeaks	46
affyPara	58
occugene	121
rTRMui	123
ddCt	160
ppiStats	65
xmapbridge	118
plw	57
GraphAT	150
Starr	50
Rtreemix	145
DiffBind	1094
Rcade	56
sscore	71
GEOquery	9775
flowClust	727
PAnnBuilder	49
FunciSNP	45
PROMISE	136
agilp	149
RCASPAR	110
attract	149
methylumi	1492
multtest	11866
nudge	44
PICS	157
GOTHiC	135
ConsensusClusterPlus	2927
pRoloc	275
Heatplus	478
chipseq	603
siggenes	3151
qvalue	18923
AGDEX	134
GSEABase	8791
RamiGO	35
clipper	148
BUS	138
gCMAP	45
copynumber	130
DSS	762
GOstats	1397
maSigPro	335
pint	41
plethy	54
qusage	409
TCC	266
SQUADD	56
MergeMaid	58
VegaMC	126
snapCGH	85
CGHcall	356
RCytoscape	37
MmPalateMiRNA	47
OutlierD	54
goTools	141
cellHTS2	175
SRAdb	459
htSeqTools	47
vsn	4898
CNORfeeder	135
yaqcaffy	51
affyio	7856
a4Core	190
goProfiles	166
aroma.light	1827
tspair	56
intansv	141
phenoDist	36
AffyRNADegradation	133
safe	618
ArrayTools	57
affyILM	149
MCRestimate	54
BAGS	136
KEGGprofile	54
SNPchip	57
BAC	51
MethylSeekR	198
OTUbase	132
GOSemSim	19102
Harshlight	144
NOISeq	600
MANOR	146
SCAN.UPC	173
LBE	221
CGHregions	153
RSVSim	131
BiRewire	209
farms	70
flowPlots	118
maDB	23
dagLogo	140
arrayQualityMetrics	461
RBioinf	145
VariantAnnotation	11334
betr	46
Streamer	134
sizepower	133
GenomicAlignments	22785
annotationTools	159
PhenStat	123
flowBin	129
hapFabia	131
geneRxCluster	134
flowFit	39
stepNorm	139
geneplotter	4581
qpgraph	201
xcms	1577
CAMERA	476
exomeCopy	197
diffGeneAnalysis	124
iFlow	8
predictionet	46
iBBiG	149
dexus	48
GeneNetworkBuilder	141
frma	172
genArise	123
gprege	41
iterativeBMAsurv	120
sigaR	43
qpcrNorm	145
metagenomeSeq	1575
EBcoexpress	137
AtlasRDF	25
savR	42
GenomeInfoDb	55184
ELBOW	39
sangerseqR	798
CopyNumber450k	25
QDNAseq	337
alsace	41
UNDO	121
flowCyBar	113
ChIPQC	374
NetPathMiner	112
GenomicFiles	1139
S4Vectors	55363
fastLiquidAssociation	123
ABSSeq	173
DupChecker	25
RUVSeq	892
AnnBuilder	11
makePlatformDesign	10
matchprobes	12
BeadExplorer	7
arrayMagic	9
RTools4TB	8
iSPlot	6
Rintact	9
pRolocGUI	153
Polyfit	36
MEIGOR	136
mQTL.NMR	29
Pbase	32
RSNPper	12
SemSim	6
proteoQC	32
SemDist	116
M3D	31
MPFE	102
hiReadsProcessor	127
ClassifyR	336
MethylMix	151
rain	154
MGFM	117
flowcatchR	133
derfinderPlot	155
seqTools	158
SigCheck	109
specL	123
MAIT	193
ToPASeq	35
BridgeDbR	127
NGScopy	29
MBAmethyl	97
mvGST	27
saps	16
QuartPAC	88
gQTLBase	35
rgsepd	110
AnalysisPageServer	30
SAGElyzer	8
cpvSNP	119
ChromoViz	8
mAPKL	41
birte	27
CODEX	145
seqPattern	755
RCyjs	123
TPP	159
SIMAT	119
BrowserVizDemo	17
diffHic	163
FISHalyseR	110
CAnD	38
FlowRepositoryR	34
GENESIS	375
EMDomics	139
ENCODExplorer	35
BEclear	134
SVM2CRM	28
TIN	115
podkat	125
OperaMate	18
caOmicsV	27
RareVariantVis	120
hierGWAS	120
erma	150
rCGH	145
AnnotationHubData	326
traseR	123
Path2PPI	119
ChIPComp	120
GEOsearch	17
INSPEcT	120
EnrichedHeatmap	595
dupRadar	164
RCy3	844
exprExternal	3
goCluster	2
SICtools	104
lfa	296
Imetagene	32
Prostar	132
DAPAR	161
R4RNA	639
globalSeq	106
dcGSA	100
systemPipeRdata	0
TimerQuant	0
coMET	89
gdsfmt	2087
MeSHSim	17
Cardinal	259
rGREAT	647
parglms	111
sidap	0
LEA	630
ComplexHeatmap	15950
BrowserViz	176
regioneR	1780
DMRcaller	145
gtrellis	167
InPAS	130
LowMACA	40
edge	153
SELEX	127
sigsquared	116
MethTargetedNGS	114
msa	1851
OmicsMarkeR	29
R3CPET	106
HilbertCurve	145
TCGAbiolinks	4655
Oscope	125
CausalR	122
RTCGA	472
LOLA	247
ProteomicsAnnotationHubData	31
ldblock	142
Guitar	186
FindMyFriends	33
widgetInvoke	7
DChIPRep	30
mmgmos	4
eudysbiome	109
miRcomp	119
gcatest	130
GeneBreak	119
SNPhood	117
multiClust	136
mtbls2	0
RnaSeqSampleSize	148
GreyListChIP	1001
IVAS	126
ProtGenerics	11309
BubbleTree	132
cytofkit	34
netbenchmark	28
RUVcorr	120
conumee	212
flowVS	158
ensembldb	9590
MatrixRider	113
ENmix	312
bamsignals	964
diggit	116
RnBeads	309
RNAprobR	33
skewr	113
RBM	119
CNVPanelizer	122
ropls	1149
DeMAND	99
Prize	28
ELMER	225
PGA	32
metaX	14
OGSA	27
iGC	116
DiffLogo	130
RiboProfiling	145
subSeq	129
myvariant	133
y2hStat	3
iCheck	117
metagenomeFeatures	31
fCI	113
miRLAB	130
NanoStringDiff	141
pathVar	36
SEPA	23
BBCAnalyzer	119
synlet	112
consensusSeekeR	122
iCOBRA	294
biomformat	5521
transcriptR	118
BioQC	163
profileScoreDist	102
sincell	122
ggtree	22155
Rhtslib	23887
muscle	384
chromDraw	120
canceR	142
rcellminer	141
cogena	140
GoogleGenomics	24
mogsa	265
pandaR	157
soGGi	378
CopywriteR	49
immunoClust	122
HIBAG	164
seq2pathway	213
similaRpeak	119
pmm	109
NanoStringQCPro	51
pwOmics	159
RTCGAToolbox	494
SummarizedExperiment	40333
acde	128
rnaseqcomp	121
genotypeeval	42
IONiseR	130
destiny	687
variancePartition	924
XBSeq	32
reposTools	3
motifbreakR	208
mirIntegrator	122
DNABarcodes	183
TarSeqQC	40
biobroom	255
iSNetwork	5
CNPBayes	25
SISPA	44
bim	5
GenomeBase	2
rfcdmin	4
SNAData	3
applera	3
MEAL	140
LedPred	97
ABAEnrichment	36
GUIDEseq	133
SWATH2stats	113
sbgr	12
scde	418
FamAgg	124
normalize450K	98
lpsymphony	896
kimod	17
cellTree	28
sevenbridges	116
EmpiricalBrownsMethod	138
GenVisR	302
ROTS	237
chromPlot	225
Uniquorn	109
garfield	99
ExperimentHub	7671
nucleoSim	109
psygenet2r	98
EBSEA	104
CountClust	26
BatchQC	155
QUBIC	161
sscu	102
pcaExplorer	383
pqsfinder	156
BgeeDB	157
epivizrData	147
oppar	114
covEB	103
dSimer	13
esetVis	112
MetCirc	121
methylKit	664
rDGIdb	83
AMOUNTAIN	113
MGFR	106
CVE	18
LOBSTAHS	138
chromstaR	107
switchde	103
geneAttribution	113
CellMapper	103
BaalChIP	117
geneXtendeR	104
uSORT	112
statTarget	142
annotatr	463
HelloRanges	140
MutationalPatterns	314
phosphonormalizer	88
MWASTools	162
clusterSeq	115
IWTomics	121
RJMCMCNucleosomes	110
Chicago	136
QuaternaryProd	111
SC3	355
BasicSTARRseq	107
RGraph2js	108
metaCCA	136
RImmPort	87
GenRank	16
MBttest	103
biosigner	133
DNAshapeR	130
bacon	176
GenoGAM	25
splineTimeR	120
MultiAssayExperiment	6220
GMRP	106
CONFESS	121
odseq	108
SpidermiR	42
recoup	110
genbankr	67
ClusterSignificance	105
InteractionSet	1810
BadRegionFinder	110
PureCN	197
Harman	174
CHRONOS	109
msPurity	119
Pigengene	137
GEM	105
NetCRG	0
bioCancer	118
crossmeta	140
sights	111
BayesKnockdown	103
IPO	215
GeneGeneInteR	102
ctsGE	110
SVAPLSseq	14
Anaquin	109
GAprediction	96
PharmacoGx	256
signeR	124
readat	16
Pi	48
DEsubs	104
FitHiC	118
PathoStat	185
regsplice	105
SRGnet	19
crisprseekplus	39
meshes	188
BPRMeth	125
GRridge	31
RnaSeqGeneEdgeRQL	4
scDD	169
scone	150
treeio	21883
CrispRVariants	136
GSALightning	91
PanVizGenerator	23
ggcyto	792
splineTCDiffExpr	2
IHW	676
iCARE	172
contiBAIT	45
ExpressionAtlas	225
Mergeomics	115
SMITE	101
HDF5Array	14601
dada2	2421
doppelgangR	203
miRNAmeConverter	113
SwathXtend	104
AneuFinder	142
scran	4633
DRIMSeq	293
debrowser	153
DEFormats	252
Linnorm	196
pbcmc	11
LymphoSeq	118
MultiDataSet	1169
epivizrServer	139
ImmuneSpaceR	45
netprioR	95
covRNA	105
FunChIP	44
Director	80
geneplast	136
MADSEQ	108
fgsea	19952
maftools	2489
ASAFE	97
qsea	118
SNPediaR	95
ImpulseDE	14
MODA	107
RCAS	149
CancerSubtypes	77
eegc	51
LINC	15
SIMLR	207
CancerInSilico	31
SPLINTER	97
yamss	113
MoonlightR	126
psichomics	110
StarBioTrek	39
GOpro	151
MAST	2074
fCCAC	106
flowPloidy	107
KEGGlincs	114
chimeraviz	142
samExploreR	16
JunctionSeq	22
flowAI	546
tofsims	23
EWCE	276
tximport	3434
scater	7005
clustComp	116
cellity	113
ExperimentHubData	268
MethPed	106
PCAN	113
EpiCluster	0
Glimma	1031
isomiRs	161
genphen	23
ISoLDE	87
OncoScore	113
CINdex	112
EGSEA	267
diffloop	37
EGAD	117
epivizrStandalone	112
MMDiff2	107
clusterExperiment	313
CytoML	445
ccmap	130
ASpli	143
normr	172
recount	375
GRmetrics	139
DeepBlueR	35
alpine	42
YAPSA	130
MetaboSignal	153
BiocWorkflowTools	198
philr	194
gCrisprTools	111
synergyfinder	250
bigmelon	119
proFIA	29
M3Drop	587
TVTB	107
yarn	142
anamiR	15
CCPROMISE	105
matter	242
DelayedArray	42239
sparseDOSSA	36
ramwas	127
BUMHMM	129
gcapc	108
coseq	182
karyoploteR	788
MCbiclust	110
discordant	131
TCGAbiolinksGUI	35
sampleClassifier	110
GISPA	39
multiOmicsViz	45
NADfinder	107
RIVER	105
ImpulseDE2	22
IMAS	106
RaggedExperiment	782
GenomicScores	622
epiNEM	134
CATALYST	569
pgca	87
RITAN	114
IsoformSwitchAnalyzeR	289
RTNsurvival	107
scoreInvHap	108
OPWeight	101
HiCcompare	246
GENIE3	1316
zFPKM	162
Onassis	22
DEP	583
rexposome	132
SPONGE	101
cytolib	2473
Rbowtie2	271
apeglm	3683
MSstatsQC	112
TMixClust	126
BASiCS	156
openPrimeR	171
chromVAR	1184
scfind	14
DelayedMatrixStats	16001
anota2seq	123
scPipe	129
bnbc	201
JASPAR2018	5
methimpute	107
PathwaySplice	14
pcxn	54
topdownr	111
annbuilder	0
loci2path	111
MAGeCKFlute	341
TFEA.ChIP	130
TCseq	518
splatter	443
ChIPexoQual	113
REMP	117
EventPointer	119
twoddpcr	104
MIGSA	26
hicrep	13
motifcounter	105
STROMA4	35
AnnotationFilter	10816
BioCor	120
methylInheritance	108
semisup	100
ATACseqQC	391
GA4GHshiny	108
ndexr	108
TReNA	3
DASC	3
methInheritSim	111
motifmatchr	1327
miRBaseConverter	167
Scale4C	115
Rhdf5lib	22944
phenopath	128
epivizrChart	111
scmap	246
RVS	100
BiocSklearn	129
ChIPanalyser	112
TFHAZ	100
AUCell	2573
multiMiR	315
methyvim	17
openPrimeRui	59
InterMineR	94
panelcn.mops	115
SeqSQC	195
iterClust	38
ontoProc	230
oncomix	101
vulcan	103
TnT	82
rhdf5client	151
runibic	111
stageR	208
tenXplore	88
iranges	0
biostrings	1
goSTAG	113
geneClassifiers	100
swfdr	111
DMRScan	90
RTNduals	115
cellscape	94
timescape	111
Logolas	15
MaxContrastProjection	17
IntEREst	107
branchpointer	128
Organism.dplyr	403
netReg	19
rqt	84
GenomicDataCommons	1006
flowTime	110
GA4GHclient	115
basecallQC	113
banocc	118
pathprint	15
ideal	132
metavizr	26
PPInfer	216
heatmaps	289
TSRchitect	24
IntramiRExploreR	99
coexnet	22
mfa	137
SingleCellExperiment	16103
diffuStats	116
beachmat	15639
oneSENSE	31
EpiDISH	671
CEMiTool	184
SCnorm	150
miRsponge	12
seqcombo	97
geoquery	1
TFARM	101
amplican	129
seqCAT	113
cbaf	112
ANF	111
trena	33
ivygapSE	105
MetaCyto	119
transcriptogramer	106
chromswitch	33
esATAC	128
PROPS	100
restfulSE	132
gep2pep	101
omicsPrint	112
LineagePulse	32
biobase	1
affyplm	0
rhvdm	0
POST	18
mimager	107
funtooNorm	110
mapscape	86
DaMiRseq	129
cydar	131
BiocFileCache	25734
BLMA	117
BioMedR	5
biotmle	112
cellbaseR	122
wiggleplotr	177
msgbsR	104
zinbwave	831
RProtoBufLib	2462
ClusterJudge	106
consensusOV	128
microbiome	1804
DMCHMM	102
Doscheda	110
IrisSpatialFeatures	6
M3C	592
miRmine	52
slalom	137
MIRA	115
progeny	471
mpra	118
bcSeq	105
GOfuncR	335
biocinstaller	1
bsgenome	0
shortread	0
flowclust	0
MetaNeighbor	138
signet	12
roma	2
hmdbQuery	122
MACPET	20
powerTCR	308
DEScan2	109
diffcoexp	175
vidger	154
tRNAscanImport	107
GateFinder	105
GARS	107
DEsingle	282
plyranges	1108
seqsetvis	124
TFutils	116
ChIC	24
Sconify	98
SDAMS	107
diffcyt	448
missRows	102
TCGAutils	676
netSmooth	111
TxRegInfra	16
genomicranges	0
BiocVersion	60289
maser	158
Ularcirc	103
qPLEXanalyzer	100
GIGSEA	90
condcomp	7
OUTRIDER	203
ACE	135
strandCheckR	103
multiHiCcompare	155
INDEED	81
REBET	100
SCBN	107
ERSSA	103
BiocNeighbors	10855
glmSparseNet	219
mixOmics	2730
bayNorm	129
KinSwingR	100
abseqR	107
MSstatsTMT	273
universalmotif	908
tRNA	123
transite	108
PepsNMR	140
ADAM	193
decompTumor2Sig	138
IsoCorrectoRGUI	99
scTensor	104
DNABarcodeCompatibility	85
degseq	1
pkgdeptools	0
RGMQL	58
DropletUtils	2420
RcisTarget	1144
omicplotR	108
Trendy	105
ChIPSeqSpike	18
kissDE	106
DominoEffect	104
iSEE	492
martini	104
GSEABenchmarkeR	124
Rgin	18
TissueEnrich	249
CytoDx	122
PowerExplorer	15
rWikiPathways	379
iCNV	109
SEPIRA	31
SparseSignatures	106
mdp	99
ccfindR	122
RNAdecay	88
GDSArray	235
SIAMCAT	164
onlineFDR	80
kmknn	0
topgo	0
MetID	102
GeneAccord	22
coRdon	206
tximeta	993
HPAanalyze	182
NormalyzerDE	213
hierinf	84
countsimQC	284
OMICsPCA	106
IsoCorrectoR	125
levi	82
LoomExperiment	621
FCBF	43
MTseeker	7
PrecisionTrialDrawer	19
snpmatrix	0
scFeatureFilter	98
CTDquerier	105
GDCRNATools	230
drawProteins	203
omicRexposome	112
BiFET	111
DEComplexDisease	24
gsean	107
BEARscc	74
iteremoval	20
TTMap	104
CellScore	100
ddPCRclust	123
MDTS	94
GeneStructureTools	115
IMMAN	97
adaptest	13
ASICS	136
scmeth	107
BioNetStat	68
RandomWalkRestartMH	48
BiocOncoTK	68
ORFik	191
OmaDB	228
iasva	109
sigFeature	301
FastqCleaner	124
gwasurvivr	135
icetea	97
sesame	814
slinky	19
mlm4omics	6
NBSplice	23
BUScorrect	102
MetNet	104
consensus	96
brainImageR	6
EnhancedVolcano	5261
celaref	112
nuCpos	95
XINA	96
BiocPkgTools	169
plotGrouper	91
FoldGO	36
primirTSS	97
breakpointR	111
NeighborNet	32
AffiXcan	101
cicero	257
gpart	22
consensusDE	106
AssessORF	188
QSutils	170
ExCluster	85
HIREewas	100
Wrench	1569
cTRAP	114
BDMMAcorrect	35
TimeSeriesExperiment	21
gostats	1
category	1
rgraphviz	2
bayseq	1
cntools	1
VCFArray	100
edger	1
logitt	1
pogos	140
mCSEA	136
CHARGE	13
srnadiff	87
enrichplot	20202
MetaGxOvarian	4
dmrseq	205
SummarizedBenchmark	37
phantasus	213
FELLA	168
hipathia	208
singleCellTK	344
RSeqAn	126
decontam	1630
InTAD	105
perturbatr	15
igvR	155
singscore	1491
sevenC	98
CAGEfightR	261
MSstatsQCgui	95
slingshot	1541
Rmmquant	102
CAMTHC	11
CellTrails	106
ipdDb	186
methylGSA	161
scruff	107
appreci8R	103
LRBaseDbi	112
DEqMS	285
miRSM	104
SIMD	98
sparsenetgls	90
MPRAnalyze	114
plpe	0
COCOA	120
HiCBricks	163
tRNAdbImport	115
ProteoMM	119
artMS	122
compartmap	41
RNASeqR	16
rbgl	1
tkwidgets	1
genomicfeatures	1
dnacopy	1
rScudo	98
DelayedDataFrame	101
deco	20
annotationdbi	1
seqlogo	0
PAIRADISE	136
Rhisat2	214
adductomicsR	103
bigPint	28
topconfects	184
phemd	28
SpectralTAD	117
CoRegFlux	8
PrInCE	100
Modstrings	142
CHETAH	137
evaluomeR	104
qsmooth	176
RcwlPipelines	107
MOFA	10
ssrch	94
PAST	96
infercnv	1163
celda	776
VennDetail	298
pipeFrame	145
TPP2D	98
XCIR	12
KnowSeq	105
AWFisher	104
Maaslin2	939
GenomicOZone	113
SigsPack	91
calm	80
microbiomeDASim	90
SharedObject	130
pwrEWAS	26
methylCC	110
MSstatsSampleSize	24
ssPATHS	93
MethCP	16
debCAM	105
tradeSeq	563
oppti	90
cliqueMS	131
flowSpy	8
RNAsense	90
MACSQuantifyR	80
selectKSigs	92
rsamtools	1
onechannelgui	1
graper	94
cytofast	12
OVESEG	112
GAPGOM	19
cola	159
rmelting	100
Melissa	100
atSNP	121
BioMM	22
pram	103
CellBench	162
DepecheR	111
hypeR	148
AMARETTO	196
pathwayPCA	114
sitePath	102
sRACIPE	108
RepViz	97
OmicsLonDA	25
SynMut	95
animalcules	248
HCABrowser	10
StructuralVariantAnnotation	221
dcanr	181
mnem	132
enrichTF	40
arrayqualitymetrics	0
MMAPPR2	26
RNAmodR.ML	98
MetaVolcanoR	55
SBGNview	188
chippeakanno	0
gemini	83
circRNAprofiler	111
SCANVIS	106
HiLDA	103
IgGeneUsage	93
VariantExperiment	80
proDA	252
fcScan	106
sojourner	20
SEtools	206
GmicR	103
MEB	93
ALPS	12
OmnipathR	731
SAIGEgds	138
blacksheepr	108
gscreend	100
LinkHD	106
schex	165
methrix	128
DEWSeq	102
fcoex	19
scDblFinder	1657
flowSpecs	116
brainflowprobes	37
ReactomeGSA	249
BiocSet	348
cummerbund	1
MBQN	102
ceRNAnetsim	82
geneticsbase	0
gseabase	0
iterativebmasurv	1
CluMSID	95
PCAtools	1217
divergence	91
doseR	102
scds	484
projectR	121
Xeva	160
mbkmeans	369
BANDITS	122
ADAMgui	107
HumanTranscriptomeCompendium	52
scAlign	18
NBAMSeq	191
lipidr	157
GladiaTOX	93
nanotatoR	33
CopyNumberPlots	146
TreeSummarizedExperiment	2084
RNAmodR.RiboMethSeq	104
ViSEAGO	142
PhyloProfile	110
ncGTW	170
BUSpaRse	219
Qtlizer	97
APAlyzer	118
BioTIP	113
peakPantheR	96
lionessR	104
waddR	83
Spaniel	115
PERFect	34
target	100
signatureSearch	187
GCSscore	23
pulsedSilac	13
netboxr	16
biomart	1
widgettools	1
RCM	107
epihet	19
SpatialCPie	119
SMAD	92
Rcwl	103
alevinQC	126
BiocSingular	12659
fishpond	261
CNVRanger	125
miRspongeR	93
qckitfastq	109
batchelor	3915
DeMixT	129
GNET2	95
PoTRA	16
proBatch	29
TNBC.CMS	33
survtype	97
Structstrings	128
CellMixS	117
ngsReports	114
profileplyr	255
DiscoRhythm	115
scRecover	99
netboost	90
scMerge	492
metagene2	116
SubCellBarCode	104
gpuMagic	88
SQLDataFrame	97
RNAmodR	108
RNAmodR.AlkAnilineSeq	98
TOAST	442
scGPS	124
Autotuner	11
AlphaBeta	97
scBFA	101
muscat	536
brendaDb	102
SingleR	4278
gramm4R	10
deltaCaptureC	94
MOSim	107
CrossICC	5
idr2d	95
DMCFB	101
CNVfilteR	98
biscuiteer	111
HCAExplorer	8
ASpediaFI	20
scTGIF	197
scPCA	126
MMUPHin	184
mitch	96
geometadb	1
arrayexpress	0
NPARC	111
CeTF	115
pmp	144
rSWeeP	97
basilisk	3294
MEAT	98
ga4ghclient	0
cindex	0
gmoviz	95
iSEEu	152
MOMA	100
regutools	109
MicrobiotaProcess	505
randRotation	84
GPA	93
OpenStats	83
timeOmics	124
ExploreModelMatrix	227
LACE	181
cBioPortalData	358
graphics	0
scuttle	9119
getDEE2	96
GWENA	249
bluster	5595
infinityFlow	116
padma	100
GSEAmining	102
PFAM.db	11
TxDb.Hsapiens.UCSC.hg19.knownGene	6
rebook	168
snifter	163
POMA	206
TimiRGeN	29
recountmethylation	114
nearBynding	90
TileDBArray	113
msImpute	232
velociraptor	178
Informeasure	89
rnaEditr	101
spatialHeatmap	220
scp	243
scRepertoire	619
lefser	544
MOFA2	551
metabCombiner	140
recount3	294
cfDNAPro	116
Herper	148
metapod	4671
shinyepico	98
censcyt	95
GEOfastq	112
nempi	93
bitops	116
CAEN	85
affio	0
BSgenome.Hsapiens.UCSC.hg38	10
biobtreeR	86
easyreporting	96
EnMCB	100
scMAGeCK	12
reconsi	88
netDx	48
struct	162
GeneTonic	311
clustifyr	186
TreeAndLeaf	150
SCOPE	107
org.Hs.eg.db	15
exomePeak2	82
sarks	93
pga	0
hicbricks	0
TAPseq	104
rrvgo	528
GCSConnection	11
EpiTxDb	99
cmapR	439
NoRCE	96
BRGenomics	69
SynExtend	100
MatrixGenerics	41620
scClassify	148
scHOT	99
CiteFuse	117
optimalFlow	100
snapcount	98
PloGO2	37
rstudio	0
GenomeInfoDbData	18
string	0
sangeranalyseR	220
flowCut	152
BrainSABER	15
methods	0
compiler	0
HCAMatrixBrowser	4
corral	111
ToxicoGx	107
pipeComp	97
fmrs	136
CytoTree	16
scCB2	98
geneLenDataBase	10
ILoReg	95
MesKit	119
hgu133plus2.db	7
Omixer	97
HPAStainR	14
GO.db	15
Homo.sapiens	6
ggtreeExtra	1117
VplotR	102
Spectra	1832
periodicDNA	90
MethReg	89
ResidualMatrix	3753
SeqGate	96
systemPipeShiny	103
GCSFilesystem	10
BayesSpace	283
MSstatsPTM	201
preciseTAD	100
PhosR	156
AnVILPublish	100
musicatk	119
SCFA	88
microbiomeExplorer	110
customCMPdb	106
MOGAMUN	91
tidySummarizedExperiment	344
moanin	202
ReactomeContentService4R	93
VarCon	87
GenomicDistributions	141
labeling	57
splines	0
stats4	1
tools	0
utils	0
degraph	1
PubScore	12
CSSQ	93
packFinder	102
BSgenome.Hsapiens.UCSC.hg19	7
DEXICA	0
vcfR	1
frenchFISH	79
vasp	7
ribor	99
ribosomeProfilingQC	122
dittoSeq	1355
receptLoss	87
tscR	18
tidybulk	333
ROCpAI	85
spicyR	195
HIPPO	93
Dune	84
scry	290
SingleCellSignalR	237
FRASER	147
glmGamPoi	4872
BiocDockerManager	17
MsCoreUtils	3508
CoreGx	267
distinct	244
datasets	0
grid	1
SPsimSeq	189
TADCompare	117
DegNorm	99
Rtpca	105
scDataviz	113
RegEnrich	107
KEGG.db	1
Nebulosa	1223
zellkonverter	1544
idpr	107
BiocIO	19453
ISAnalytics	76
ncRNAtools	97
proActiv	107
rsemmed	83
pageRank	87
MSPrep	178
ChromSCape	102
MSstatsTMTPTM	6
biocthis	263
GSgalgoR	92
VERSO	89
MSEADbi	7
NewWave	112
megadepth	169
NanoMethViz	127
marr	94
ADImpute	113
SpatialDecon	223
famat	95
MSstatsConvert	440
RLassoCox	91
flowGraph	85
dichromat	3
magrittr	8
sendmailR	1
PFP	13
stats	0
graphat	1
dearseq	231
BgeeCall	88
SimFFPE	90
DAMEfinder	99
DIAlignR	60
ctgGEM	11
basilisk.utils	3188
omicsmarker	0
prostar	0
rlang	405
rhdf5filters	20169
structToolbox	149
eisaR	144
RNAAgeCalc	109
combi	121
scTHI	90
TBSignatureProfiler	93
CARNIVAL	183
dpeak	27
ROSeq	101
peco	92
rfaRm	91
methylSig	119
metaseqR2	117
cytomapper	323
GGPA	86
sparseMatrixStats	15464
spqn	92
weitrix	98
AnVIL	505
base	1
facets	0
grDevices	0
multicrispr	100
simplifyEnrichment	987
PeacoQC	256
MouseFM	183
multiGSEA	170
RadioGx	100
MultiBaC	114
UTAR	0
SpatialExperiment	4765
escape	434
wpm	102
transomics2cytoscape	107
hummingbird	88
uncoverappLib	95
QFeatures	2585
simpleSingleCell	0
UMI4Cats	93
Rfastp	181
metabolomicsWorkbenchR	115
FScanR	19
RIPAT	29
SCATE	23
ANCOMBC	1234
FilterFFPE	102
tomoda	98
aggregateBioVar	109
dasper	16
AnVILBilling	89
bambu	297
ExperimentSubset	110
densvis	1303
tidySingleCellExperiment	235
CellaRepertorium	30
GWAS.BAYES	98
sigpathway	1
AlpsNMR	122
mina	77
SplicingFactory	85
CNVgears	34
bnem	97
ttgsea	90
BumpyMatrix	413
mumosa	107
brew	28
RColorBrewer	9
calib	0
PoDCall	68
parallel	1
tcltk	1
RiboDiPA	95
SOMNiBUS	83
autonomics	93
lisaClust	166
VGAM	12
PhIPData	104
IlluminaHumanMethylation450kmanifest	6
mia	1425
barcodetrackR	94
OSCA.basic	19
drugTargetInteractions	97
interacCircos	95
sechm	199
DelayedRandomArray	98
diffUTR	80
systemPipeTools	94
POWSC	101
HubPub	144
ichorCNA	0
cosmosR	126
RCSL	97
ReactomeGraph4R	50
Rbec	90
awst	93
csawBook	4
ebimage	0
scShapes	85
cageminer	100
VAExprs	84
veloviz	85
ggspavis	220
svaRetro	91
scAnnotatR	200
ODER	10
rGenomeTracks	89
MicrobiomeProfiler	155
imcRtools	254
epistack	91
cliProfiler	89
TargetDecoy	102
mosbi	91
genomicInstability	104
deconvR	108
Cepo	152
biodbLipidmaps	34
rprimer	109
CNVMetrics	93
ggmanh	268
crisprBase	152
BOBaFIT	93
coMethDMR	105
mulcom	1
CONSTANd	90
NanoStringNCTools	383
InteractiveComplexHeatmap	407
scClassifR	6
TrajectoryUtils	1901
HiCDCPlus	127
MACSr	126
Summix	86
TrajectoryGeometry	75
ORFhunteR	93
OSCA.workflows	29
midasHLA	89
clusterprofiler	1
MsBackendMgf	454
CelliD	216
geva	92
OSCA.intro	51
methylscaper	121
BioNERO	257
CIMICE	91
fedup	89
conclus	10
mirTarRnaSeq	103
tricycle	240
FEAST	155
cellmigRation	86
supersigs	175
quantiseqr	545
multiSight	15
fgga	88
SingleMoleculeFootprinting	101
msqrob2	190
epigraHMM	98
CNViz	93
DExMA	99
epidecodeR	89
MatrixQCvis	188
GenomicSuperSignature	105
rawrr	193
spiky	86
BUSseq	98
segmenter	100
NanoTube	118
dStruct	86
Dino	93
NeuCA	51
svaNUMT	89
spatzie	82
enhancerHomologSearch	84
scanMiRApp	91
orthogene	353
metapone	92
ggmsa	541
transformGamPoi	110
nullranges	186
benchdamic	97
RLSeq	24
CyTOFpower	57
MSstatsLiP	113
surfaltr	88
netOmics	24
txcutr	88
biodbHmdb	101
RiboCrypt	90
scatterHatch	84
sccomp	131
BSgenome.Hsapiens.NCBI.GRCh38	1
KaryoploteR	0
ScaledMatrix	12436
VaSP	96
MsFeatures	1365
MetaboCoreUtils	1738
TraRe	12
targetsearch	0
satuRn	287
MAGAR	122
mfuzz	0
ComPrAn	88
ModCon	79
IRISFGM	20
InterCellar	107
sitadela	90
SingleRBook	3
PDATK	173
miaViz	316
airpart	106
LRcell	90
ppcseq	94
miloR	432
granulator	151
ptairMS	84
tLOH	87
immunotation	92
biodb	141
epialleleR	98
mistyR	137
DeepPINCS	91
OSCA.multisample	15
csdR	85
BindingSiteFinder	95
MAI	98
rmspc	77
plotgardener	244
bugsigdbr	246
tanggle	112
atena	98
biodbChebi	102
HPiP	94
monaLisa	197
microbiomeMarker	381
tripr	87
cytoKernel	104
scReClassify	99
TRESS	97
easier	129
miaSim	113
Cogito	92
CellBarcode	106
bayespeak	0
SCArray	108
ramr	92
planet	214
GeomxTools	382
fobitools	99
Travel	5
dce	83
MsBackendMassbank	109
miQC	147
PhenoGeneRanker	72
OSCA.advanced	13
OSCA	6
hca	97
dir.expiry	3276
condiments	132
memes	248
wppi	74
CytoGLMM	100
MungeSumstats	928
treekoR	107
XNAString	94
decoupleR	1242
cyanoFilter	92
cbpManager	92
BloodGen3Module	136
MQmetrics	17
MSstatsLOBD	90
vissE	141
HGC	98
KBoost	79
DelayedTensor	94
m6Aboost	85
FindIT2	96
FLAMES	112
scanMiR	109
iPath	80
mitoClone2	107
GEOexplorer	102
BentoBox	0
spatialDE	131
traviz	67
methylclock	195
BioPlex	8
ProteoDisco	91
MsBackendRawFileReader	96
pairkat	118
sparrow	363
synapsis	83
NxtIRFcore	15
GeoDiff	103
biodbKegg	68
biodbUniprot	88
scTreeViz	94
pengls	80
netZooR	88
hermes	250
GBScleanR	115
semsim	0
PanomiR	96
CompoundDb	256
MuData	102
purr	0
ASURAT	99
single	41
DepInfeR	86
biodbNci	96
terraTCGAdata	98
cytoMEM	126
mbOmic	10
extraChIPs	119
BiocBaseUtils	6728
flowworkspace	1
katdetectr	97
proteasy	24
RedisParam	83
scMET	83
goSorensen	97
MASS	346
globals	54
FDb.InfiniumMethylation.hg19	6
truncnorm	3
hdrcde	6
colorRamps	8
ggpointdensity	6
blme	6
IlluminaHumanMethylationEPICanno.ilm10b4.hg19	6
FlowSorted.CordBloodCombined.450k	10
isva	5
org.Rn.eg.db	10
ccdata	10
lsa	6
randomcoloR	6
coloc	15
agricolae	11
bookdown	28
waiter	8
gsmoothr	5
R.devices	8
Rsolnp	1
uwot	132
NADA	6
Rfast	15
RcppAnnoy	30
docopt	5
sparsesvd	13
Signac	16
JASPAR2020	6
furrr	9
tidytree	20
sparklyr	8
scales	70
hms	25
susieR	14
knitr	238
evaluate	354
htmltools	279
campsismod	0
deSolve	3
devtools	13
webmockr	0
epiR	2
evd	4
xaringanthemer	1
dittodb	0
fork	1
gamlss.dist	3
forecast	7
ggPMX	0
ipaddress	0
lpSolveAPI	1
klaR	4
jsTreeR	1
interp	8
multcomp	111
packrat	8
pins	6
pmtables	1
precommit	1
pdftools	2
pkgload	271
partitions	0
randtoolbox	0
paletteer	11
profile	0
R.rsp	1
prismatic	10
pointblank	1
recipes	43
Rsmlx	0
Rdpack	16
rhub	2
rclipboard	5
reda	0
s2	25
rsconnect	24
roxygen2	151
spatialreg	0
spaMM	0
sensitivity	1
tweenr	29
spam	13
tracee	1
statmod	2
vaultr	1
terra	25
RAthena	7
gplots	136
RPostgres	106
RandomFields	0
RandomFieldsUtils	0
RcppParallel	26
bit64	112
bit	135
memoise	8
blob	35
BMA	1
checkmate	197
leaps	10
geosphere	8
stringdist	12
BiocManager	357
Matrix	390
rpart	50
xmlparsedata	0
mice	11
mlbench	9
loo	13
odbc	17
paws.security.identity	13
r2d3	1
rematch2	1
rcdk	7
plotmo	2
enc	0
expm	9
extraTrees	0
rJava	112
subselect	0
superpc	0
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yardstick	15
paws.cost.management	13
paws.storage	110
FNN	143
nloptr	53
SparseM	64
sp	61
fansi	100
readr	77
desc	62
sfsmisc	3
remotes	149
corpcor	1
sessioninfo	5
dtw	0
ggsignif	6
here	1
webshot	15
perm	8
samr	6
restfulr	7
phenomis	95
omada	82
Markdown	0
zenith	131
xaringanExtra	1
regioneReloaded	92
ncdf4	8
phylobase	1
PMCMRplus	3
polspline	3
PoissonSeq	0
qgam	0
qrnn	0
rgexf	1
rentrez	0
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rle	0
rlemon	1
RNeXML	0
RUnit	8
sampling	1
servr	5
shinycssloaders	13
signature.tools.lib.v2.1	0
SOAR	0
spatstat.geom	36
startupmsg	1
spatstat.utils	30
stabs	0
subplex	1
SuperLearner	1
tclust	1
tensorA	8
TailRank	6
timereg	1
trust	0
tsna	0
ucminf	6
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visNetwork	3
worrms	2
wikitaxa	0
WikipediR	5
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afex	2
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BiasedUrn	8
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bigreadr	0
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Boruta	1
cgdsr	0
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calibrate	1
chemometrics	0
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formatR	16
plotly	61
tidyr	206
openssl	405
HiContacts	150
SPIAT	153
msigdbr	6
ggtreeDendro	95
Voyager	203
plyr	55
gtable	207
HandTill2001	0
ipred	27
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cardelino	98
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JADE	1
simpleSeg	100
Illumina450ProbeVariants.db	1
kpmt	0
octad	93
FuseSOM	92
htmlwidgets	80
codetools	90
rj.gd	1
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ASExtras4	0
future.apply	160
wk	28
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shinyjs	4
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EasyABC	0
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gllvm	0
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HWxtest	0
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janeaustenr	3
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Iso	0
interpretR	0
jiebaR	0
KODAMA	0
LaplacesDemon	1
ks	4
languageserver	1
labdsv	0
leafcutter	0
logspline	1
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mobster	0
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ncbit	0
mvabund	0
network	2
np	0
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oompaData	7
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pan	1
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peakPick	0
aplot	39
rtkore	0
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padr	1
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units	18
timechange	162
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BSgenome.Mmusculus.UCSC.mm9	0
signature.tools.lib	0
signature.tools.lib.back	0
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conquer	2
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smoothHR	0
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pd.atdschip.tiling	0
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bench	0
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asht	0
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RCX	98
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updateObject	82
CBEA	82
protGear	93
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biodbMirbase	17
biodbNcbi	88
RAREsim	80
RolDE	94
borealis	93
cogeqc	105
GenomicInteractionNodes	90
omicsViewer	89
rifi	85
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standR	168
SpotClean	124
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factR	92
admisc	6
aws.s3	6
ash	6
fds	6
IlluminaHumanMethylation450kanno.ilmn12.hg19	6
IlluminaHumanMethylationEPICanno.ilm10b2.hg19	6
shinypanel	6
shinyhelper	6
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TxDb.Mmusculus.UCSC.mm10.knownGene	6
R.filesets	8
aroma.core	8
mutoss	8
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ALL	11
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RcppHNSW	19
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GWASExactHW	7
EnsDb.Hsapiens.v75	6
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egg	6
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rvest	158
modelr	17
readxl	33
reticulate	80
gmp	14
posterior	10
callr	247
caret	35
gert	115
dtplyr	15
paws.compute	98
cluster	80
httr	59
tinytex	342
Rcpp	337
DBI	323
RCurl	143
shiny	269
fontawesome	115
sass	263
generics	11
locfit	74
farver	176
broom	113
duckdb	8
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collapse	1
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dockerfiler	0
drake	2
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datawizard	15
emayili	2
clock	21
graphlayouts	44
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ymlthis	0
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fields	9
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insight	19
mlr3	2
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patchwork	72
processx	267
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R.cache	1
qs	9
ps	320
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rgl	4
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sm	1
rstpm2	1
rticles	1
tune	11
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sf	32
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ModelMetrics	1
RcppProgress	1
Rtsne	21
ape	56
openxlsx	98
prettyunits	60
digest	395
BBmisc	1
robustbase	29
flexmix	1
renv	109
foreign	56
spatial	24
nnet	37
lintr	113
km.ci	1
logistf	7
mclust	11
segmented	27
microbenchmark	12
optparse	47
pander	2
party	92
pwr	0
randomForest	40
rstan	12
rstanarm	1
shinythemes	1
emdbook	8
styler	23
xgboost	110
paws	13
pryr	8
pscl	2
promises	259
fastmap	229
e1071	93
iterators	4
HDInterval	8
RcppEigen	132
vctrs	110
utf8	83
config	15
rex	1
ddalpha	1
git2r	33
testthat	271
dimRed	1
ivpack	0
mixsqp	16
igraph	157
reldist	8
shinyFiles	11
filelock	39
WGCNA	14
ellipsis	4
demuxmix	257
consICA	175
proto	1
progressr	36
R.matlab	1
RcppRoll	6
rda	0
repr	5
resample	0
rms	4
shapefiles	0
signal	1
SignifReg	0
sem	1
SimSeq	0
soundecology	0
SNPlocs.Hsapiens.dbSNP151.GRCh38	0
spatstat.core	9
spatstat.sparse	22
stopwords	1
survivalROC	1
topicmodels	1
tmle	3
tsne	1
uroot	0
akima	0
ABSOLUTE	1
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audio	1
base64	3
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BB	1
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BCEE	0
bigparallelr	0
biom	0
brglm	0
bridgedist	0
bmp	0
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mi	0
snow	4
ggplot2	286
CircSeqAlignTk	83
minqa	76
commonmark	226
data.table	339
dplyr	84
gower	18
inum	2
libcoin	3
brave	0
gaston	1
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signifinder	72
gargle	27
adegenet	1
expss	1
BioNAR	107
MSstatsShiny	131
graphql	1
rj	1
httptest	2
scam	1
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Ckmeans.1d.dp	0
ggstatsplot	3
SBGNview.data	1
speckle	250
BioCGenerics	0
ggfun	61
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conditionz	0
contfrac	0
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ctree	0
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deal	0
distrEx	0
DiagrammeR	2
distillery	0
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dummies	0
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fossil	0
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gap	1
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ggExtra	3
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GPfit	1
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ica	3
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irace	0
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longmemo	0
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mediation	0
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NLP	3
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org.Bt.eg.db	0
org.Ce.eg.db	0
org.Gg.eg.db	0
org.Cf.eg.db	0
org.Dr.eg.db	1
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purrr	72
pd.hg.u133.plus.2	0
pd.mouse430.2	0
TCGAbiolinksGUI.data	1
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eha	0
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log4r	6
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osqp	2
pingr	14
ggbeeswarm	3
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maps	9
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png	29
DEoptimR	20
StanHeaders	15
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sROC	0
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TxDb.Hsapiens.UCSC.hg38.knownGene	1
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hgug4112a.db	0
babelgene	6
fixest	0
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mlr	1
ggRandomForests	0
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lixoftConnectors.2	0
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C50	0
Bioconductor	0
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TEKRABber	175
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xcore	85
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UCell	1538
crayon	189
PSMatch	2029
TREG	88
fastreeR	112
GenProSeq	80
nnSVG	189
rgoslin	140
qmtools	92
pareg	58
ompBAM	134
GRaNIE	135
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tomoseqr	84
scDDboost	88
iSEEhex	140
syntenet	132
CTSV	96
SpliceWiz	152
HiCDOC	101
crisprDesign	138
GenomAutomorphism	81
eds	380
deseq	1
ATACseqTFEA	91
venn	9
aws.signature	6
rainbow	9
fda	11
BSgenome.Cfamiliaris.UCSC.canFam3	5
FlowSorted.Blood.EPIC	10
shinyBS	7
EnsDb.Hsapiens.v86	8
shinyWidgets	69
shinydashboardPlus	18
aroma.apd	9
R.huge	8
metap	11
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ggdendro	15
estimability	29
qlcMatrix	13
PRROC	5
qap	9
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GenABEL	1
forcats	14
googlesheets4	20
paws.common	113
sn	9
viridisLite	34
DT	87
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umap	9
nlme	208
xfun	374
rmarkdown	333
targets	8
tibble	16
dbplyr	190
arm	4
bbr	1
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arrow	19
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cem	1
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dfidx	0
workflowsets	10
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downlit	117
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Epi	3
xaringan	1
dm	1
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ggdist	6
future	174
latticeExtra	5
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lavaan	11
lotri	0
metafor	5
nhanesA	0
performance	13
parameters	14
plm	0
partykit	3
plumber	19
pkgdown	155
scico	0
RMariaDB	19
spacetime	2
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icenReg	0
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tsModel	0
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metaBLUE	0
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nycflights13	0
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caretEnsemble	44
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kinship2	3
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zelusutils	1
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satchel	1
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ggedit	0
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HaploBlocker	0
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variantannotation	1
argusDS.trading.optimization	1
methyLImp2	80
teal.reporter	2
knowYourCG	69
swamp	1
SpaceMarkers	70
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BE	1
forestmodel	1
shinyauthr	1
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argusDS.database	2
greekLetters	2
monkey	1
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monocle3	2
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54vectors	1
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rgr	1
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probably	1
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colMeans	0
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treemapify	0
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argusDS.distributions	0
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IlluminaHumanMethylationEPICv2manifest	1
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argusDS.model.validation	0
genetics	1
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dar	64
tsoutliers	2
ssh	4
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gypsum	2737
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txdbmaker	3741
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teal.logger	3
pwalign	5662
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scMultiSim	73
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nordpred	1
mlr3mbo	1
gsva	1
statgenGWAS	1
cffr	1
hahmmr	2
Obigolem	1
annotationDBI	1
clusterpval	1
sosta	20
flowchart	1
SimInf	0
Synth	0
rcpp	0
BioBase	1
ruODK	0
funkyheatmap	1
fastqcr	0
SPP	0
rsparkling	0
rattle	0
rspm	0
kyotil	0
patientProfilesVis	1
rbioinfcookbook	1
sleuth	1
zingeR	1
graphiQs	1
teal.builder.modules	1
mlmm	1
oce	1
TCGAplot	1
strandannotate	1
org.Psativumv2.eg.db	1
annotationhub	1
TCCGUI	1
HDLSSkST	1
tryCatchLog	1
ClustOfVar	1
clarabel	1
Rcmdr	1
Ecume	1
gwasglue	1
set	1
furniture	1
fhcmacro	1
Affy	1
BioManager	1
psychonetrics	1
rliger	1
DecisionCurve	0
mma	0
GSEAbase	0
dblplyr	0
signac	0
rlaR	0
RProtoBuf	0
ergm.multi	0
hypergate	0
vimp	0
cols4all	1
rankprod	1
mgvc	1
grImport2	1
RNAseqQC	1
PROscorer	1
badminton	1
concrete	1
argusDS.signal.generation	1
splice2neo	1
MATRIX	1
Polytect	19
ReducedExperiment	18
AlphaSimR	1
geyser	18
qctools	1
conflrhlx	1
h5mread	98
blocksdesign	1
turner	1
paran	1
dipsaus	1
ProfilerAPI2	1
scarHRD	1
dandelionR	11
PhViD	1
chevreulShiny	3
chevreulPlot	3
MeSH.db	1
SFSI	1
minimal	1
EntropyEstimation	1
DAISIEprep	1
bonemarrowref.SeuratData	1
PCDSpline	1
SpectraVis	1
leafgl	1
reactable.extras	1
standby	1
gggenomes	1
rtables.officer	1
DECoN	1
revgeo	1
rigvf	2
DoubletDecon	1
EmbedSOM	1
teal.builder.checks	1
CePa	1
dgof	1
QGDA	1
ympes	1
bWGR	1
uwo	1
matrixGenerics	1
shiny.worker	1
MATRIXS	1
DWSClient	1
rtfmt	1
BulkSignalR	7
TreeTools	1
pneumotypr	1
scQTLtools	13
MetaboDynamics	13
ChronosDSTools	1
ondisc	1
chevreulProcess	4
CodeDepends	1
HiCParser	10
bedbaser	11
XeniumIO	11
s3	1
qs2	1
EnvDataQC	1
arpr	1
Rigraphlib	7
R6P	1
OSTA.data	3
CPSM	5
SVP	3
alabaster.sfe	3
FDRreg	1
entropart	1
ParallelLogger	1
Andromeda	1
cpp11bigwig	1
minga	1
vtable	1
koalaNetworkDriveData	1
seraut	1
bibliometrix	1
quanteda.textstats	1
fastmat	1
COCONUT	1
ccclust	1
switchstep	1
duckplyr	1
rmail	1
BinaryTrial	1
ESTIMATE	1
MuSiC	1
plotthis	1
PREDE	1
argusDS.studio.visualisations	1
VISION	1
AAVess	1
magittr	1
depmapSLr	1
pRRophetic	1
DropletQC	1
emoji	1
irGSEA	1
PopGenome	1
legocolors	1
MetaQC	1
dropletutils	1
beachmat.tiledb	20
stabilityTools	1
Runiversal	1
ggsurfvit	1
BARTools	1
obliqueRF	1
popEpi	1
iclusterplus	1
gneDB	1
ELViS	3
reformulas	1
BioInstaller	1
SSOAP	1
verification	1
gsEasy	1
jazzPanda	7
poem	6
sparsevctrs	1
XAItest	2
limpa	2
treesitter	1
hta.ard	1
Seraut	1
org.Ssalar.eg.db	1
colorSpec	1
tidygate	1
cclust	1
citril.metadata	1
cicerone	1
mmrbws	1
SpiecEasi	1
hypothesis	1
RTriangle	1
revealxpress	1
bonsai	1
DGCA	1
eigenMS	1
CENTIPEDE	1
orcutt	1
eatRep	1
TrIdent	17
PopVar	1
SpATS	1
statgenSTA	1
xCell2	17
smoppix	16
desplot	1
random.cdisc.data	1
nc	1
maaslin3	16
mist	5
SpatialExperimentIO	20
ctv	1
biocmake	15
PICB	14
sdw	1
SurvMetrics	1
MSstatsBioNet	11
SRAdbV2	1
CARDspa	8
seqtime	1
tracklayer	1
NetBenchmark	1
TropFishR	1
arkdb	1
pmqtsreport	1
terapadog	7
TENET	3
DNAcycP2	3
mpralm	1
clixyzabc	1
SpatialPack	1
openalexR	1
rempsyc	1
PSweight	1
MCODE	1
BayesMendel	1
shinydashboarq	1
gmqn	1
NNsig	1
CETS	1
BioMarks.ProteomeR	1
CMScaller	1
IOBR	1
cpp11armadillo	1
RaMS	1
autoslideR	1
FCPS	1
protoclust	1
phargorn	1
GenometriCorr	1