Back to Workflows build report for BioC 3.22

This page was generated on 2025-04-25 16:30 -0400 (Fri, 25 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4722
palomino8Windows Server 2022 Datacenterx644.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six" 4494
lconwaymacOS 12.7.1 Montereyx86_644.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" 4520
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 28/29HostnameOS / ArchINSTALLBUILD
TCGAWorkflow 1.33.0  (landing page)
Tiago Chedraoui Silva
Snapshot Date: 2025-04-25 12:45 -0400 (Fri, 25 Apr 2025)
git_url: https://git.bioconductor.org/packages/TCGAWorkflow
git_branch: devel
git_last_commit: 9635550
git_last_commit_date: 2025-04-15 10:29:17 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  
palomino8Windows Server 2022 Datacenter / x64  ERROR    ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  ERROR    ERROR  

INSTALL results for TCGAWorkflow on nebbiolo2

To the developers/maintainers of the TCGAWorkflow package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: TCGAWorkflow
Version: 1.33.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL TCGAWorkflow
StartedAt: 2025-04-25 13:04:07 -0400 (Fri, 25 Apr 2025)
EndedAt: 2025-04-25 13:04:07 -0400 (Fri, 25 Apr 2025)
EllapsedTime: 0.2 seconds
RetCode: 1
Status:   ERROR  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL TCGAWorkflow
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* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’
ERROR: dependencies ‘rGADEM’, ‘maftools’ are not available for package ‘TCGAWorkflow’
Perhaps try a variation of:
install.packages(c('rGADEM', 'maftools'))
* removing ‘/home/biocbuild/bbs-3.22-bioc/R/site-library/TCGAWorkflow’