Back to Build/check report for BioC 3.22 experimental data |
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This page was generated on 2025-04-24 15:41 -0400 (Thu, 24 Apr 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4722 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 141/429 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
gageData 2.47.0 (landing page) Weijun Luo
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | |||||||
To the developers/maintainers of the gageData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: gageData |
Version: 2.47.0 |
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:gageData.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings gageData_2.47.0.tar.gz |
StartedAt: 2025-04-24 12:08:37 -0400 (Thu, 24 Apr 2025) |
EndedAt: 2025-04-24 12:09:21 -0400 (Thu, 24 Apr 2025) |
EllapsedTime: 43.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: gageData.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:gageData.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings gageData_2.47.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.22-data-experiment/meat/gageData.Rcheck’ * using R version 4.5.0 (2025-04-11) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 * running under: Ubuntu 24.04.2 LTS * using session charset: UTF-8 * checking for file ‘gageData/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘gageData’ version ‘2.47.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘gageData’ can be installed ... OK * checking installed package size ... INFO installed size is 10.8Mb sub-directories of 1Mb or more: data 10.7Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed hnrnp.cnts 9.314 0.217 9.531 * checking PDF version of manual ... OK * DONE Status: OK
gageData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL gageData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘gageData’ ... ** this is package ‘gageData’ version ‘2.47.0’ ** using staged installation ** data ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gageData)
gageData.Rcheck/gageData-Ex.timings
name | user | system | elapsed | |
bmp6 | 3.495 | 0.187 | 3.682 | |
genesets | 2.741 | 0.033 | 2.774 | |
gse16873.full | 1.542 | 0.074 | 1.617 | |
hnrnp.cnts | 9.314 | 0.217 | 9.531 | |
sc.gene | 0.027 | 0.000 | 0.027 | |