Back to Build/check report for BioC 3.22 experimental data
ABCD[E]FGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2025-04-24 15:41 -0400 (Thu, 24 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4722
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 119/429HostnameOS / ArchINSTALLBUILDCHECK
ewceData 1.17.0  (landing page)
Alan Murphy
Snapshot Date: 2025-04-24 07:30 -0400 (Thu, 24 Apr 2025)
git_url: https://git.bioconductor.org/packages/ewceData
git_branch: devel
git_last_commit: 34a89b5
git_last_commit_date: 2025-04-15 10:16:26 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published


CHECK results for ewceData on nebbiolo2

To the developers/maintainers of the ewceData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ewceData
Version: 1.17.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings ewceData_1.17.0.tar.gz
StartedAt: 2025-04-24 12:04:43 -0400 (Thu, 24 Apr 2025)
EndedAt: 2025-04-24 12:07:14 -0400 (Thu, 24 Apr 2025)
EllapsedTime: 150.4 seconds
RetCode: 0
Status:   OK  
CheckDir: ewceData.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings ewceData_1.17.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-data-experiment/meat/ewceData.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘ewceData/DESCRIPTION’ ... OK
* this is package ‘ewceData’ version ‘1.17.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ewceData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

ewceData.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL ewceData
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’
* installing *source* package ‘ewceData’ ...
** this is package ‘ewceData’ version ‘1.17.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ewceData)

Tests output


Example timings

ewceData.Rcheck/ewceData-Ex.timings

nameusersystemelapsed
all_hgnc1.9250.3732.581
all_hgnc_wtEnsembl0.8320.1441.056
all_mgi0.7100.0900.875
all_mgi_wtEnsembl0.7640.0630.902
alzh_gwas_top1000.0010.0000.000
cortex_mrna2.3830.3232.785
ctd3.1360.1353.350
ensembl_transcript_lengths_GCcontent1.0150.0721.163
ewceData-Package0.7170.0300.823
example_genelist0.6730.0170.766
hpsd_genes0.9960.1541.225
hypothalamus_mrna0.9460.0651.085
id_genes0.7040.0540.834
mgi_synonym_data1.0890.0421.209
mouse_to_human_homologs0.7440.0210.842
rbfox_genes0.7570.0470.884
schiz_genes0.7400.0320.851
tt_alzh0.9560.1031.137
tt_alzh_BA360.7740.0460.896
tt_alzh_BA440.7470.0260.851