PGA 1.7.3
Bo Wen , Shaohang Xu
| Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/PGA | | Last Changed Rev: 130667 / Revision: 131943 | | Last Changed Date: 2017-06-26 02:15:35 -0400 (Mon, 26 Jun 2017) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | [ OK ] | |
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### cd PGA.buildbin-libdir/PGA && zip -r ../../PGA_1.7.3.zip . & cd ../..
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adding: CITATION (332 bytes security) (deflated 61%)
adding: DESCRIPTION (332 bytes security) (deflated 43%)
adding: doc/ (372 bytes security) (stored 0%)
adding: doc/index.html (332 bytes security) (deflated 57%)
adding: doc/PGA.pdf (332 bytes security) (deflated 19%)
adding: doc/PGA.R (332 bytes security) (deflated 74%)
adding: doc/PGA.Rnw (332 bytes security) (deflated 70%)
adding: extdata/ (372 bytes security) (stored 0%)
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adding: extdata/annotation/exon_anno.RData (332 bytes security) (stored 0%)
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adding: extdata/annotation/proseq.RData (332 bytes security) (deflated 0%)
adding: extdata/annotation/splicemax.RData (332 bytes security) (stored 0%)
adding: extdata/annotation/txdb.sqlite (332 bytes security) (deflated 66%)
adding: extdata/input/ (372 bytes security) (stored 0%)
adding: extdata/input/junctions.bed (332 bytes security) (deflated 56%)
adding: extdata/input/mascot.dat (332 bytes security) (deflated 63%)
adding: extdata/input/msgfplus.mzid (332 bytes security) (deflated 92%)
adding: extdata/input/pga.mgf (332 bytes security) (deflated 56%)
adding: extdata/input/PGA.vcf (332 bytes security) (deflated 71%)
adding: extdata/input/transcripts.gtf (332 bytes security) (deflated 92%)
adding: extdata/input/Trinity.fasta (332 bytes security) (deflated 66%)
adding: help/ (372 bytes security) (stored 0%)
adding: help/aliases.rds (332 bytes security) (stored 0%)
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adding: help/paths.rds (332 bytes security) (stored 0%)
adding: help/PGA.rdb (332 bytes security) (deflated 1%)
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adding: html/ (372 bytes security) (stored 0%)
adding: html/00Index.html (332 bytes security) (deflated 63%)
adding: html/R.css (332 bytes security) (deflated 75%)
adding: INDEX (332 bytes security) (deflated 59%)
adding: MD5 (332 bytes security) (deflated 44%)
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adding: Meta/vignette.rds (332 bytes security) (stored 0%)
adding: NAMESPACE (332 bytes security) (deflated 56%)
adding: NEWS (332 bytes security) (deflated 45%)
adding: parser4PGA.jar (332 bytes security) (deflated 10%)
adding: R/ (372 bytes security) (stored 0%)
adding: R/PGA (332 bytes security) (deflated 41%)
adding: R/PGA.rdb (332 bytes security) (deflated 1%)
adding: R/PGA.rdx (332 bytes security) (stored 0%)
adding: unitTests/ (372 bytes security) (stored 0%)
adding: unitTests/test_check_parser.R (332 bytes security) (deflated 19%)