##############################################################################
##############################################################################
###
### Running command:
###
### cd VariantTools.buildbin-libdir/VariantTools && zip -r ../../VariantTools_1.18.1.zip . & cd ../..
###
##############################################################################
##############################################################################
adding: data/ (304 bytes security) (stored 0%)
adding: data/vignette.rda (264 bytes security) (deflated 0%)
adding: DESCRIPTION (264 bytes security) (deflated 39%)
adding: doc/ (304 bytes security) (stored 0%)
adding: doc/fig/ (304 bytes security) (stored 0%)
adding: doc/fig/bar-caller-freq-summary-dbSNP-count-all.pdf (264 bytes security) (deflated 9%)
adding: doc/fig/bar-fdr-cov-bin-merged-all.pdf (264 bytes security) (deflated 9%)
adding: doc/fig/bar-fnr-cov-bin-merged-all.pdf (264 bytes security) (deflated 9%)
adding: doc/fig/boxplot-altFraction.pdf (264 bytes security) (deflated 8%)
adding: doc/fig/boxplot-expected-obs-freq-source-merged-vt.pdf (264 bytes security) (deflated 0%)
adding: doc/fig/boxplot-obs-freq-sample-ceu-all.pdf (264 bytes security) (deflated 0%)
adding: doc/fig/density-altFraction.pdf (264 bytes security) (deflated 8%)
adding: doc/fig/dot-percent-recovered-caller-merged-20-all.pdf (264 bytes security) (deflated 11%)
adding: doc/fig/errors.pdf (264 bytes security) (deflated 5%)
adding: doc/fig/hist-fdr-rep-count-all.pdf (264 bytes security) (deflated 11%)
adding: doc/fig/igv_high_cov_neg.png (264 bytes security) (deflated 25%)
adding: doc/fig/mix.pdf (264 bytes security) (deflated 17%)
adding: doc/fig/post-filters.pdf (264 bytes security) (deflated 5%)
adding: doc/fig/variant-calling-filters.pdf (264 bytes security) (deflated 4%)
adding: doc/fig/VariantCallingProcess.pdf (264 bytes security) (deflated 3%)
adding: doc/fig/workflow.pdf (264 bytes security) (deflated 3%)
adding: doc/index.html (264 bytes security) (deflated 64%)
adding: doc/tutorial.org (264 bytes security) (deflated 67%)
adding: doc/tutorial.pdf (264 bytes security) (deflated 1%)
adding: doc/VariantTools.pdf (264 bytes security) (deflated 8%)
adding: doc/VariantTools.R (264 bytes security) (deflated 82%)
adding: doc/VariantTools.Rnw (264 bytes security) (deflated 63%)
adding: help/ (304 bytes security) (stored 0%)
adding: help/aliases.rds (264 bytes security) (stored 0%)
adding: help/AnIndex (264 bytes security) (deflated 75%)
adding: help/paths.rds (264 bytes security) (stored 0%)
adding: help/VariantTools.rdb (264 bytes security) (deflated 1%)
adding: help/VariantTools.rdx (264 bytes security) (stored 0%)
adding: html/ (304 bytes security) (stored 0%)
adding: html/00Index.html (264 bytes security) (deflated 80%)
adding: html/R.css (264 bytes security) (deflated 75%)
adding: INDEX (264 bytes security) (deflated 59%)
adding: MD5 (264 bytes security) (deflated 46%)
adding: Meta/ (304 bytes security) (stored 0%)
adding: Meta/data.rds (264 bytes security) (stored 0%)
adding: Meta/features.rds (264 bytes security) (stored 0%)
adding: Meta/hsearch.rds (264 bytes security) (stored 0%)
adding: Meta/links.rds (264 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (264 bytes security) (stored 0%)
adding: Meta/package.rds (264 bytes security) (stored 0%)
adding: Meta/Rd.rds (264 bytes security) (stored 0%)
adding: Meta/vignette.rds (264 bytes security) (stored 0%)
adding: NAMESPACE (264 bytes security) (deflated 57%)
adding: NEWS (264 bytes security) (deflated 56%)
adding: R/ (304 bytes security) (stored 0%)
adding: R/VariantTools (264 bytes security) (deflated 41%)
adding: R/VariantTools.rdb (264 bytes security) (deflated 31%)
adding: R/VariantTools.rdx (264 bytes security) (stored 0%)
adding: unitTests/ (304 bytes security) (stored 0%)
adding: unitTests/test_calculateConcordanceMatrix.R (264 bytes security) (deflated 57%)
adding: unitTests/test_idVerify.R (264 bytes security) (deflated 67%)
adding: unitTests/test_variantConcordance.R (264 bytes security) (deflated 53%)
adding: vcf/ (304 bytes security) (stored 0%)
adding: vcf/header.csv (264 bytes security) (deflated 25%)
