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BioC 3.3: BUILD report for trio on linux2.bioconductor.org

This page was generated on 2015-10-27 12:12:25 -0400 (Tue, 27 Oct 2015).

Package 1067/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
trio 3.9.0
Holger Schwender
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/trio
Last Changed Rev: 109592 / Revision: 109948
Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded [ ERROR ] skipped 
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: trio
Version: 3.9.0
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data trio
StartedAt: 2015-10-26 23:40:16 -0400 (Mon, 26 Oct 2015)
EndedAt: 2015-10-26 23:40:21 -0400 (Mon, 26 Oct 2015)
EllapsedTime: 5.8 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data trio
###
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* checking for file ‘trio/DESCRIPTION’ ... OK
* preparing ‘trio’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: survival
Loading required package: haplo.stats

Error: processing vignette 'trio.Rnw' failed with diagnostics:
 chunk 27 
Error in if (idx.f + nchar(delims[i]) < lastIdx) re = c(re, curStr) : 
  missing value where TRUE/FALSE needed
Execution halted