BioC 3.3: CHECK report for Path2PPI on windows2.bioconductor.org
This page was generated on 2015-10-27 12:16:12 -0400 (Tue, 27 Oct 2015).
Path2PPI 1.1.0
Oliver Philipp
| Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Path2PPI | | Last Changed Rev: 109592 / Revision: 109948 | | Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
Summary
| Package: Path2PPI
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| Version: 1.1.0
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| Command: rm -rf Path2PPI.buildbin-libdir Path2PPI.Rcheck && mkdir Path2PPI.buildbin-libdir Path2PPI.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Path2PPI.buildbin-libdir Path2PPI_1.1.0.tar.gz >Path2PPI.Rcheck\00install.out 2>&1 && cp Path2PPI.Rcheck\00install.out Path2PPI-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=Path2PPI.buildbin-libdir --install="check:Path2PPI-install.out" --force-multiarch --no-vignettes --timings Path2PPI_1.1.0.tar.gz
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| StartedAt: 2015-10-27 04:50:32 -0400 (Tue, 27 Oct 2015)
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| EndedAt: 2015-10-27 04:51:58 -0400 (Tue, 27 Oct 2015)
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| EllapsedTime: 85.4 seconds
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| RetCode: 0
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| Status: OK
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| CheckDir: Path2PPI.Rcheck
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| Warnings: 0
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Command output
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### Running command:
###
### rm -rf Path2PPI.buildbin-libdir Path2PPI.Rcheck && mkdir Path2PPI.buildbin-libdir Path2PPI.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Path2PPI.buildbin-libdir Path2PPI_1.1.0.tar.gz >Path2PPI.Rcheck\00install.out 2>&1 && cp Path2PPI.Rcheck\00install.out Path2PPI-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=Path2PPI.buildbin-libdir --install="check:Path2PPI-install.out" --force-multiarch --no-vignettes --timings Path2PPI_1.1.0.tar.gz
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* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/Path2PPI.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Path2PPI/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Path2PPI' version '1.1.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Path2PPI' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [18s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
predictPPI 5.99 0 5.99
** running examples for arch 'x64' ... [24s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
predictPPI 7.03 0 7.03
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R' [3s]
[4s] OK
** running tests for arch 'x64' ...
Running 'runTests.R' [5s]
[6s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
Path2PPI.Rcheck/00install.out:
install for i386
* installing *source* package 'Path2PPI' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'Path2PPI' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Path2PPI' as Path2PPI_1.1.0.zip
* DONE (Path2PPI)
Path2PPI.Rcheck/examples_i386/Path2PPI-Ex.timings:
| name | user | system | elapsed
|
| Path2PPI | 0 | 0 | 0 |
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| addReference | 0.64 | 0.01 | 0.66 |
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| ai | 0.17 | 0.00 | 0.17 |
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| getHybridNetwork | 2.31 | 0.02 | 2.33 |
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| getPPI | 2.27 | 0.00 | 2.26 |
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| homologyScore | 0 | 0 | 0 |
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| plot.Path2PPI | 2.46 | 0.00 | 2.47 |
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| predictPPI | 5.99 | 0.00 | 5.99 |
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| removeReference | 0.53 | 0.01 | 0.54 |
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| showInteraction | 2.27 | 0.00 | 2.27 |
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| showReferences | 0.56 | 0.02 | 0.58 |
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Path2PPI.Rcheck/examples_x64/Path2PPI-Ex.timings:
| name | user | system | elapsed
|
| Path2PPI | 0 | 0 | 0 |
|
| addReference | 0.75 | 0.02 | 0.76 |
|
| ai | 0.12 | 0.00 | 0.12 |
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| getHybridNetwork | 3.28 | 0.03 | 3.32 |
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| getPPI | 3.03 | 0.03 | 3.06 |
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| homologyScore | 0 | 0 | 0 |
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| plot.Path2PPI | 3.10 | 0.00 | 3.09 |
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| predictPPI | 7.03 | 0.00 | 7.03 |
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| removeReference | 0.53 | 0.00 | 0.53 |
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| showInteraction | 4.01 | 0.02 | 4.24 |
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| showReferences | 0.91 | 0.00 | 0.97 |
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