EnrichedHeatmap 1.1.6
Zuguang Gu
| Snapshot Date: 2016-04-20 17:20:35 -0700 (Wed, 20 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/EnrichedHeatmap | | Last Changed Rev: 116347 / Revision: 116626 | | Last Changed Date: 2016-04-15 05:21:05 -0700 (Fri, 15 Apr 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | [ OK ] | OK | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings EnrichedHeatmap_1.1.6.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.3-bioc/meat/EnrichedHeatmap.Rcheck’
* using R version 3.3.0 beta (2016-04-06 r70435)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘EnrichedHeatmap/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘EnrichedHeatmap’ version ‘1.1.6’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EnrichedHeatmap’ can be installed ... [9s/11s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
anno_enriched : <anonymous>: no visible global function definition for
‘col2rgb’
anno_enriched : <anonymous>: no visible global function definition for
‘rgb’
default_smooth_fun: no visible global function definition for ‘predict’
default_smooth_fun: no visible global function definition for
‘loess.control’
draw,EnrichedHeatmapList: no visible binding for global variable
‘row_title’
draw,EnrichedHeatmapList: no visible binding for global variable
‘row_title_gp’
draw,EnrichedHeatmapList: no visible binding for global variable
‘row_title_side’
draw,EnrichedHeatmapList: no visible binding for global variable
‘column_title’
draw,EnrichedHeatmapList: no visible binding for global variable
‘column_title_side’
draw,EnrichedHeatmapList: no visible binding for global variable
‘column_title_gp’
draw,EnrichedHeatmapList: no visible binding for global variable
‘heatmap_legend_side’
draw,EnrichedHeatmapList: no visible binding for global variable
‘show_heatmap_legend’
draw,EnrichedHeatmapList: no visible binding for global variable
‘heatmap_legend_list’
draw,EnrichedHeatmapList: no visible binding for global variable
‘annotation_legend_side’
draw,EnrichedHeatmapList: no visible binding for global variable
‘show_annotation_legend’
draw,EnrichedHeatmapList: no visible binding for global variable
‘annotation_legend_list’
draw,EnrichedHeatmapList: no visible binding for global variable ‘gap’
draw,EnrichedHeatmapList: no visible binding for global variable
‘main_heatmap’
draw,EnrichedHeatmapList: no visible binding for global variable
‘row_dend_side’
draw,EnrichedHeatmapList: no visible binding for global variable
‘row_hclust_side’
draw,EnrichedHeatmapList: no visible binding for global variable
‘row_sub_title_side’
Undefined global functions or variables:
annotation_legend_list annotation_legend_side col2rgb column_title
column_title_gp column_title_side gap heatmap_legend_list
heatmap_legend_side loess.control main_heatmap predict rgb
row_dend_side row_hclust_side row_sub_title_side row_title
row_title_gp row_title_side show_annotation_legend
show_heatmap_legend
Consider adding
importFrom("grDevices", "col2rgb", "rgb")
importFrom("stats", "loess.control", "predict")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [26s/30s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
EnrichedHeatmap 11.631 0.276 13.714
anno_enriched 6.811 0.169 7.923
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘test-all.R’ [10s/12s]
[10s/12s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.3-bioc/meat/EnrichedHeatmap.Rcheck/00check.log’
for details.