Back to Workflows build report for BioC 3.21

This page was generated on 2025-04-04 16:30 -0400 (Fri, 04 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" 4798
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" 4566
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4596
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 18/30HostnameOS / ArchINSTALLBUILD
methylationArrayAnalysis 1.31.0  (landing page)
Jovana Maksimovic
Snapshot Date: 2025-04-04 12:45 -0400 (Fri, 04 Apr 2025)
git_url: https://git.bioconductor.org/packages/methylationArrayAnalysis
git_branch: devel
git_last_commit: 838c5d7
git_last_commit_date: 2024-10-29 10:02:30 -0400 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  

BUILD results for methylationArrayAnalysis on lconway

To the developers/maintainers of the methylationArrayAnalysis package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: methylationArrayAnalysis
Version: 1.31.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis
StartedAt: 2025-04-04 13:05:02 -0400 (Fri, 04 Apr 2025)
EndedAt: 2025-04-04 13:12:41 -0400 (Fri, 04 Apr 2025)
EllapsedTime: 459.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis
###
##############################################################################
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* checking for file ‘methylationArrayAnalysis/DESCRIPTION’ ... OK
* preparing ‘methylationArrayAnalysis’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘methylationArrayAnalysis.Rmd’ using rmarkdown
2025-04-04 13:10:22.888 R[32629:582880629] XType: com.apple.fonts is not accessible.
2025-04-04 13:10:22.888 R[32629:582880629] XType: XTFontStaticRegistry is enabled.

Quitting from methylationArrayAnalysis.Rmd:565-571 [figure11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `valid.viewport()`:
! invalid 'yscale' in viewport
---
Backtrace:
    ▆
 1. └─Gviz::plotTracks(...)
 2.   ├─Gviz:::drawGrid(thisTrack, ranges["from"], ranges["to"])
 3.   └─Gviz:::drawGrid(thisTrack, ranges["from"], ranges["to"])
 4.     └─Gviz (local) .local(GdObject, ...)
 5.       ├─grid::pushViewport(...)
 6.       └─grid::dataViewport(...)
 7.         └─grid::viewport(xscale = xscale, yscale = yscale, ...)
 8.           └─grid:::valid.viewport(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'methylationArrayAnalysis.Rmd' failed with diagnostics:
invalid 'yscale' in viewport
--- failed re-building ‘methylationArrayAnalysis.Rmd’

SUMMARY: processing the following file failed:
  ‘methylationArrayAnalysis.Rmd’

Error: Vignette re-building failed.
Execution halted