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This page was generated on 2025-04-03 15:01 -0400 (Thu, 03 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" 4797
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 307/432HostnameOS / ArchINSTALLBUILDCHECK
ProteinGymR 1.1.4  (landing page)
Tram Nguyen
Snapshot Date: 2025-04-03 07:30 -0400 (Thu, 03 Apr 2025)
git_url: https://git.bioconductor.org/packages/ProteinGymR
git_branch: devel
git_last_commit: 165844a
git_last_commit_date: 2025-03-13 14:32:23 -0400 (Thu, 13 Mar 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for ProteinGymR on nebbiolo1

To the developers/maintainers of the ProteinGymR package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ProteinGymR
Version: 1.1.4
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ProteinGymR
StartedAt: 2025-04-03 11:31:22 -0400 (Thu, 03 Apr 2025)
EndedAt: 2025-04-03 11:31:33 -0400 (Thu, 03 Apr 2025)
EllapsedTime: 11.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ProteinGymR
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* checking for file ‘ProteinGymR/DESCRIPTION’ ... OK
* preparing ‘ProteinGymR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘ProteinGymR’ ...
** this is package ‘ProteinGymR’ version ‘1.1.4’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘ProteinGymR’ in namespaceExport(ns, exports):
 undefined exports: pdb_structures
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/tmp/RtmpK06NEv/Rinst1511772146244b/ProteinGymR’
      -----------------------------------
ERROR: package installation failed