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This page was generated on 2025-04-15 15:51 -0400 (Tue, 15 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 RC (2025-04-04 r88118) -- "How About a Twenty-Six" 870
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Package 115/218HostnameOS / ArchINSTALLBUILDCHECK
HubPub 1.15.4  (landing page)
Kayla Interdonato
Snapshot Date: 2025-04-15 12:00 -0400 (Tue, 15 Apr 2025)
git_url: https://git.bioconductor.org/packages/HubPub
git_branch: devel
git_last_commit: c0787a1
git_last_commit_date: 2025-03-14 11:17:54 -0400 (Fri, 14 Mar 2025)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for HubPub on teran2

To the developers/maintainers of the HubPub package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: HubPub
Version: 1.15.4
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data HubPub
StartedAt: 2025-04-15 13:01:51 -0400 (Tue, 15 Apr 2025)
EndedAt: 2025-04-15 13:01:57 -0400 (Tue, 15 Apr 2025)
EllapsedTime: 6.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data HubPub
###
##############################################################################
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* checking for file ‘HubPub/DESCRIPTION’ ... OK
* preparing ‘HubPub’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CreateAHubPackage.Rmd’ using rmarkdown
--- finished re-building ‘CreateAHubPackage.Rmd’

--- re-building ‘HubPub.Rmd’ using rmarkdown

Quitting from HubPub.Rmd:69-72 [create]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! unknown Bioconductor version '3.22'; see https://bioconductor.org/install
---
Backtrace:
    ▆
 1. └─HubPub::create_pkg(file.path(fl, "examplePkg"), "ExperimentHub")
 2.   ├─base::stopifnot(...)
 3.   └─BiocManager::available(pkg)
 4.     ├─BiocManager:::.repositories_filter(repositories())
 5.     │ └─base::logical(length(repos))
 6.     └─BiocManager::repositories()
 7.       └─BiocManager:::.version_validate(version)
 8.         ├─base::ifelse(.is_CRAN_check(), .message(txt), .stop(txt))
 9.         └─BiocManager:::.stop(txt)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'HubPub.Rmd' failed with diagnostics:
unknown Bioconductor version '3.22'; see https://bioconductor.org/install
--- failed re-building ‘HubPub.Rmd’

SUMMARY: processing the following file failed:
  ‘HubPub.Rmd’

Error: Vignette re-building failed.
Execution halted