Back to Long Tests report for BioC 3.21

This page was generated on 2025-04-12 23:55 -0400 (Sat, 12 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4634
palomino7Windows Server 2022 Datacenterx644.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" 4572
lconwaymacOS 12.7.1 Montereyx86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4599
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 13/30HostnameOS / ArchCHECK
clusterExperiment 2.27.0  (landing page)
Elizabeth Purdom
Snapshot Date: 2025-04-12 09:55 -0400 (Sat, 12 Apr 2025)
git_url: https://git.bioconductor.org/packages/clusterExperiment
git_branch: devel
git_last_commit: 3bb82fb
git_last_commit_date: 2024-10-29 10:12:11 -0400 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR  
palomino7Windows Server 2022 Datacenter / x64  ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  ERROR  

CHECK results for clusterExperiment on palomino7

To the developers/maintainers of the clusterExperiment package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: clusterExperiment
Version: 2.27.0
Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no clusterExperiment_2.27.0.tar.gz
StartedAt: 2025-04-12 16:06:43 -0400 (Sat, 12 Apr 2025)
EndedAt: 2025-04-12 16:06:47 -0400 (Sat, 12 Apr 2025)
EllapsedTime: 4.0 seconds
RetCode: 1
Status:   ERROR  
CheckDir: clusterExperiment.Rcheck
Warnings: NA

Tests output


'R CMD check' output

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### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no clusterExperiment_2.27.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbuild/bbs-3.21-bioc-longtests/meat/clusterExperiment.Rcheck'
* using R version 4.5.0 RC (2025-04-04 r88126 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'clusterExperiment/DESCRIPTION' ... OK
* this is package 'clusterExperiment' version '2.27.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: 'mbkmeans'

Imports includes 21 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable.  Move as many as possible to Suggests and
use conditionally.

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
* DONE

Status: 1 ERROR
See
  'E:/biocbuild/bbs-3.21-bioc-longtests/meat/clusterExperiment.Rcheck/00check.log'
for details.

Installation output