Back to Long Tests report for BioC 3.21

This page was generated on 2025-04-19 23:55 -0400 (Sat, 19 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4831
palomino7Windows Server 2022 Datacenterx644.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" 4573
lconwaymacOS 12.7.1 Montereyx86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4599
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 5/30HostnameOS / ArchCHECK
biodb 1.16.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-04-19 09:55 -0400 (Sat, 19 Apr 2025)
git_url: https://git.bioconductor.org/packages/biodb
git_branch: RELEASE_3_21
git_last_commit: 2dd6d33
git_last_commit_date: 2025-04-15 12:29:47 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  WARNINGS  
palomino7Windows Server 2022 Datacenter / x64  ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  OK  

CHECK results for biodb on palomino7

To the developers/maintainers of the biodb package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodb
Version: 1.16.0
Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodb_1.16.0.tar.gz
StartedAt: 2025-04-19 16:03:46 -0400 (Sat, 19 Apr 2025)
EndedAt: 2025-04-19 16:07:38 -0400 (Sat, 19 Apr 2025)
EllapsedTime: 231.7 seconds
RetCode: 1
Status:   ERROR  
CheckDir: biodb.Rcheck
Warnings: NA

Tests output

biodb.Rcheck/tests/testthat.Rout.fail


R version 4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

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Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
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Type 'demo()' for some demos, 'help()' for on-line help, or
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> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodb")
biodb.INFO [2025-04-19 16:06:09.929][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-19 16:06:09.935][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/definitions.yml".
biodb.DEBUG[2025-04-19 16:06:09.943][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:06:09.945][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-19 16:06:09.946][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-19 16:06:09.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:09.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:09.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:09.951][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-19 16:06:09.982][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-19 16:06:09.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:09.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:09.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:09.987][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-19 16:06:09.988][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-19 16:06:09.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:09.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:09.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:09.992][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-19 16:06:09.994][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-19 16:06:09.995][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-19 16:06:09.996][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:09.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:09.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:09.999][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-19 16:06:10.000][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-19 16:06:10.002][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-19 16:06:10.003][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.006][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-19 16:06:10.007][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-19 16:06:10.008][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.012][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-19 16:06:10.013][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-19 16:06:10.014][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-19 16:06:10.015][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.018][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-19 16:06:10.020][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-19 16:06:10.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.024][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-19 16:06:10.025][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-19 16:06:10.026][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-19 16:06:10.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.031][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-19 16:06:10.032][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-19 16:06:10.033][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-19 16:06:10.034][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-19 16:06:10.035][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-19 16:06:10.037][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-19 16:06:10.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.041][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-19 16:06:10.042][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-19 16:06:10.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.047][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-19 16:06:10.048][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-19 16:06:10.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.052][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-19 16:06:10.053][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-19 16:06:10.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.058][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-19 16:06:10.059][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-19 16:06:10.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.063][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-19 16:06:10.065][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-19 16:06:10.066][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.069][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-19 16:06:10.070][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-19 16:06:10.073][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-19 16:06:10.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.078][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-19 16:06:10.079][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-19 16:06:10.080][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-19 16:06:10.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.087][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-19 16:06:10.114][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:06:10.127][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-19 16:06:10.129][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:06:10.130][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:06:10.131][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:06:10.132][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:06:10.134][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:06:10.135][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:06:10.136][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-19 16:06:10.137][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:06:10.138][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:06:10.139][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-19 16:06:10.141][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:06:10.142][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:06:10.143][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:06:10.144][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:06:10.144][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:06:10.144][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:06:10.144][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-19 16:06:10.144][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:06:10.146][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:06:10.152][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:06:10.153][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:06:10.154][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:06:10.156][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:06:10.157][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:06:10.158][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:06:10.159][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:06:10.160][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:06:10.161][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:06:10.162][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:06:10.163][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:06:10.165][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-19 16:06:10.167][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:06:10.168][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-19 16:06:10.169][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:06:10.170][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:06:10.171][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:06:10.172][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:06:10.174][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:06:10.175][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:06:10.176][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-19 16:06:10.177][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:06:10.178][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:06:10.180][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-19 16:06:10.181][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:06:10.182][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:06:10.183][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:06:10.184][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:06:10.184][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:06:10.184][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:06:10.184][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-19 16:06:10.184][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:06:10.186][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:06:10.187][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:06:10.188][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:06:10.189][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:06:10.190][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:06:10.191][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:06:10.192][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:06:10.194][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:06:10.195][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:06:10.196][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:06:10.197][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:06:10.198][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:06:10.200][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-19 16:06:10.202][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:06:10.203][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-19 16:06:10.204][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:06:10.205][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:06:10.206][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:06:10.207][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:06:10.209][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:06:10.210][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:06:10.211][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-19 16:06:10.212][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:06:10.213][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:06:10.214][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-19 16:06:10.216][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:06:10.217][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:06:10.218][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:06:10.219][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:06:10.220][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:06:10.221][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:06:10.222][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:06:10.224][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:06:10.225][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:06:10.226][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:06:10.227][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:06:10.228][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:06:10.229][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:06:10.230][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:06:10.232][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:06:10.233][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:06:10.234][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-19 16:06:10.236][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:06:10.237][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-19 16:06:10.238][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:06:10.239][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:06:10.241][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:06:10.242][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:06:10.243][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:06:10.244][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:06:10.245][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-19 16:06:10.247][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:06:10.248][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:06:10.249][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-19 16:06:10.250][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:06:10.251][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:06:10.252][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:06:10.254][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:06:10.255][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:06:10.256][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:06:10.257][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:06:10.258][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:06:10.259][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:06:10.260][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:06:10.261][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:06:10.263][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:06:10.264][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:06:10.265][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:06:10.266][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:06:10.267][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:06:10.270][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:06:10.272][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:06:10.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:06:10.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:06:10.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:06:10.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:06:10.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:06:10.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:06:10.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:06:10.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:06:10.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:06:10.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:06:10.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:06:10.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:06:10.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:06:10.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:06:10.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:06:10.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.316][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:06:10.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:06:10.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:06:10.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:06:10.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.327][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:06:10.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:06:10.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:06:10.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:06:10.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:06:10.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:06:10.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.343][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:06:10.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:06:10.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:06:10.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:06:10.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:06:10.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:06:10.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:06:10.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:06:10.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:06:10.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:06:10.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:06:10.370][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-19 16:06:10.374][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-19 16:06:10.375][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-19 16:06:10.377][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-19 16:06:10.378][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-19 16:06:10.380][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-19 16:06:10.381][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-19 16:06:10.383][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-19 16:06:10.384][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-19 16:06:10.386][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-19 16:06:10.387][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-19 16:06:10.389][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-19 16:06:10.390][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-19 16:06:10.392][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-19 16:06:10.393][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-19 16:06:10.395][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-19 16:06:10.396][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-19 16:06:10.398][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-19 16:06:10.400][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-19 16:06:10.401][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-19 16:06:10.403][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-19 16:06:10.404][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-19 16:06:10.406][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-19 16:06:10.407][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-19 16:06:10.409][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-19 16:06:10.410][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-19 16:06:10.412][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-19 16:06:10.413][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-19 16:06:10.415][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-19 16:06:10.417][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-19 16:06:10.418][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-19 16:06:10.420][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-19 16:06:10.421][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-19 16:06:10.423][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-19 16:06:10.424][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-19 16:06:10.426][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-19 16:06:10.427][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-19 16:06:10.429][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-19 16:06:10.430][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-19 16:06:10.432][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-19 16:06:10.433][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-19 16:06:10.435][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-19 16:06:10.436][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-19 16:06:10.438][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-19 16:06:10.440][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-19 16:06:10.441][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-19 16:06:10.443][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-19 16:06:10.444][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-19 16:06:10.446][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-19 16:06:10.447][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-19 16:06:10.449][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-19 16:06:10.450][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-19 16:06:10.452][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-19 16:06:10.453][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-19 16:06:10.455][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-19 16:06:10.456][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-19 16:06:10.458][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-19 16:06:10.460][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-19 16:06:10.461][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-19 16:06:10.463][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-19 16:06:10.464][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-19 16:06:10.466][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-19 16:06:10.467][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-19 16:06:10.469][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-19 16:06:10.470][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-19 16:06:10.472][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-19 16:06:10.473][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-19 16:06:10.475][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-19 16:06:10.476][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-19 16:06:10.478][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-19 16:06:10.479][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-19 16:06:10.481][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-19 16:06:10.482][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-19 16:06:10.484][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-19 16:06:10.485][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-19 16:06:10.487][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-19 16:06:10.489][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-19 16:06:10.490][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-19 16:06:10.492][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-19 16:06:10.493][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-19 16:06:10.495][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-19 16:06:10.496][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-19 16:06:10.498][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-19 16:06:10.520][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-19 16:06:10.523][initialize] This is biodb version 1.16.0.
biodb.INFO [2025-04-19 16:06:10.524][biodb::testContext]
biodb.INFO [2025-04-19 16:06:10.525][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:06:10.526][biodb::testContext] Test context - Long tests on extension generator.
biodb.INFO [2025-04-19 16:06:10.527][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:06:10.528][biodb::testContext]
biodb.INFO [2025-04-19 16:06:10.531][biodb::testThat]
biodb.INFO [2025-04-19 16:06:10.532][biodb::testThat] Running test function  test_runningMakeOnNewExtPkg  (" We can run make on a newly generated extension package. ").
biodb.INFO [2025-04-19 16:06:10.533][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:06:10.534][biodb::testThat]
biodb.DEBUG[2025-04-19 16:06:11.331][function()] Package directory is "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/biodbFoo2LocalRcpp".
biodb.DEBUG[2025-04-19 16:06:11.332][function()] Make log file is "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/biodbFoo2LocalRcpp.make.doc.log".
biodb.DEBUG[2025-04-19 16:07:04.394][function()] Make log file is "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/biodbFoo2LocalRcpp.make.log".
biodb.DEBUG[2025-04-19 16:07:08.223][function()] Make log file is "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/biodbFoo2LocalRcpp.make.test.log".
biodb.INFO [2025-04-19 16:07:12.637][biodb::testContext]
biodb.INFO [2025-04-19 16:07:12.638][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:07:12.640][biodb::testContext] Test context - CompCsvFile long generic tests
biodb.INFO [2025-04-19 16:07:12.641][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:07:12.642][biodb::testContext]
biodb.INFO [2025-04-19 16:07:12.645][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-19 16:07:12.648][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/definitions.yml".
biodb.DEBUG[2025-04-19 16:07:12.653][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:07:12.654][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-19 16:07:12.656][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-19 16:07:12.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.660][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-19 16:07:12.661][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-19 16:07:12.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.666][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-19 16:07:12.667][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-19 16:07:12.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.671][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-19 16:07:12.672][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-19 16:07:12.674][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-19 16:07:12.675][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.678][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-19 16:07:12.679][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-19 16:07:12.681][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-19 16:07:12.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.685][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-19 16:07:12.686][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-19 16:07:12.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.691][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-19 16:07:12.692][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-19 16:07:12.693][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-19 16:07:12.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.698][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-19 16:07:12.699][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-19 16:07:12.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.703][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-19 16:07:12.704][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-19 16:07:12.706][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-19 16:07:12.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.710][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-19 16:07:12.711][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-19 16:07:12.712][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-19 16:07:12.714][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-19 16:07:12.715][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-19 16:07:12.716][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-19 16:07:12.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.720][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-19 16:07:12.728][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-19 16:07:12.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.732][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-19 16:07:12.734][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-19 16:07:12.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.738][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-19 16:07:12.739][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-19 16:07:12.740][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.744][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-19 16:07:12.745][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-19 16:07:12.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.749][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-19 16:07:12.751][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-19 16:07:12.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.755][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-19 16:07:12.756][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-19 16:07:12.759][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-19 16:07:12.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.764][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-19 16:07:12.765][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-19 16:07:12.766][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-19 16:07:12.768][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.771][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-19 16:07:12.773][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:12.774][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-19 16:07:12.776][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:12.777][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:07:12.778][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:12.779][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:07:12.780][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:12.782][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:07:12.783][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-19 16:07:12.784][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:07:12.785][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:12.787][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-19 16:07:12.788][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:07:12.789][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:12.790][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:12.792][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:07:12.792][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:12.792][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:12.792][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:12.792][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:12.793][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:07:12.794][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:12.795][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:12.796][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:07:12.797][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:12.799][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:12.800][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:07:12.801][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:12.802][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:07:12.803][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:07:12.804][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:12.806][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:12.807][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-19 16:07:12.809][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:12.810][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-19 16:07:12.811][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:12.813][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:07:12.814][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:12.815][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:07:12.816][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:12.817][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:07:12.819][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-19 16:07:12.820][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:07:12.821][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:12.822][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-19 16:07:12.823][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:07:12.825][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:12.826][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:12.827][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:07:12.827][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:12.827][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:12.827][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:12.827][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:12.828][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:07:12.830][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:12.831][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:12.832][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:07:12.833][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:12.834][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:12.835][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:07:12.836][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:12.838][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:07:12.839][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:07:12.840][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:12.841][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:12.842][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-19 16:07:12.844][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:12.846][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-19 16:07:12.851][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:12.853][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:07:12.854][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:12.856][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:07:12.858][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:12.859][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:07:12.860][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-19 16:07:12.861][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:07:12.862][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:12.864][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-19 16:07:12.865][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:07:12.866][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:12.867][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:12.868][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:12.870][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:07:12.871][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:12.872][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:12.873][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:07:12.874][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:12.875][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:12.876][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:07:12.878][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:12.879][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:07:12.880][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:07:12.881][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:12.882][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:12.883][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-19 16:07:12.885][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:12.887][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-19 16:07:12.888][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:12.889][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:07:12.890][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:12.892][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:07:12.893][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:12.894][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:07:12.895][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-19 16:07:12.896][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:07:12.898][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:12.899][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-19 16:07:12.900][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:07:12.901][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:12.902][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:12.904][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:12.905][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:07:12.906][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:12.907][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:12.908][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:07:12.909][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:12.911][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:12.912][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:07:12.913][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:12.914][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:07:12.915][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:07:12.916][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:12.918][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:12.919][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:07:12.920][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:12.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:12.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:12.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:12.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.934][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:12.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:12.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:12.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:12.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:12.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:12.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:12.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:12.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:12.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:12.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:12.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:12.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:12.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:12.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:12.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:12.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:12.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:12.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:12.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:12.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:12.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:12.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:12.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:12.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:12.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:13.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:13.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:13.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:13.003][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:13.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:13.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:13.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:13.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:13.009][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:13.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:13.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:13.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:13.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:13.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:13.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:13.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:13.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:13.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:13.020][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-19 16:07:13.021][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-19 16:07:13.023][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-19 16:07:13.025][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-19 16:07:13.026][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-19 16:07:13.028][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-19 16:07:13.029][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-19 16:07:13.031][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-19 16:07:13.032][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-19 16:07:13.034][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-19 16:07:13.036][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-19 16:07:13.037][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-19 16:07:13.039][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-19 16:07:13.040][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-19 16:07:13.042][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-19 16:07:13.044][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-19 16:07:13.045][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-19 16:07:13.047][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-19 16:07:13.048][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-19 16:07:13.050][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-19 16:07:13.051][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-19 16:07:13.053][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-19 16:07:13.055][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-19 16:07:13.056][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-19 16:07:13.058][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-19 16:07:13.059][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-19 16:07:13.061][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-19 16:07:13.063][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:13.064][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-19 16:07:13.066][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-19 16:07:13.067][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-19 16:07:13.069][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-19 16:07:13.070][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-19 16:07:13.072][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-19 16:07:13.074][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-19 16:07:13.075][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-19 16:07:13.077][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-19 16:07:13.078][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-19 16:07:13.080][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-19 16:07:13.081][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-19 16:07:13.083][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-19 16:07:13.085][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-19 16:07:13.091][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-19 16:07:13.093][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-19 16:07:13.094][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-19 16:07:13.096][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-19 16:07:13.097][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-19 16:07:13.099][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-19 16:07:13.100][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-19 16:07:13.102][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-19 16:07:13.103][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-19 16:07:13.105][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-19 16:07:13.106][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-19 16:07:13.108][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-19 16:07:13.110][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-19 16:07:13.111][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-19 16:07:13.113][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-19 16:07:13.114][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-19 16:07:13.116][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-19 16:07:13.117][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-19 16:07:13.119][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-19 16:07:13.121][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-19 16:07:13.122][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-19 16:07:13.124][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-19 16:07:13.125][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-19 16:07:13.127][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-19 16:07:13.128][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-19 16:07:13.130][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-19 16:07:13.132][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-19 16:07:13.133][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-19 16:07:13.135][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-19 16:07:13.136][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-19 16:07:13.138][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-19 16:07:13.139][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-19 16:07:13.141][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-19 16:07:13.143][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-19 16:07:13.144][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-19 16:07:13.146][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-19 16:07:13.147][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-19 16:07:13.149][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-19 16:07:13.150][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-19 16:07:13.152][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-19 16:07:13.154][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-19 16:07:13.155][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-19 16:07:13.158][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-04-19 16:07:13.173][super$initialize] Initialize connector comp.csv.file.
biodb.DEBUG[2025-04-19 16:07:13.174][biodb$getFactory()$createConn] Creating new connector comp.csv.file for database class comp.csv.file , with base URL "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/chebi_extract.tsv".
biodb.INFO [2025-04-19 16:07:13.181][biodb::testThat]
biodb.INFO [2025-04-19 16:07:13.182][biodb::testThat] Running test function  test_cache_for_local_db  (" We can use the cache system for a local database. ").
biodb.INFO [2025-04-19 16:07:13.183][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:13.185][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:13.187][bdb$getConfig()$set] Set key use.cache.for.local.db to TRUE.
biodb.DEBUG[2025-04-19 16:07:13.188][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:13.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:13.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:13.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:13.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:13.214][private$loadEntries] Creating entries from ids [2]: "1018, 15939".
biodb.DEBUG[2025-04-19 16:07:13.221][conn$getEntryContent] Get Compound CSV File entry content(s) for 2 id(s)...
biodb.TRACE[2025-04-19 16:07:13.227][cch$loadFileContent] Trying to load 2 files from cache: [2]: "1018, 15939".
biodb.INFO [2025-04-19 16:07:13.229][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:13.241][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.INFO [2025-04-19 16:07:13.242][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:13.260][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:13.262][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:13.263][conn$getEntryContent] 2 entry content(s) need to be fetched from Compound CSV File database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2025-04-19 16:07:13.264][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:13.266][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:13.267][private$doGetEntryContentFromDb] Entry id: 1018, 15939
biodb.INFO [2025-04-19 16:07:13.268][private$initDb] Loading file database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2025-04-19 16:07:13.271][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2025-04-19 16:07:13.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:13.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:13.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:13.315][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:13.342][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2025-04-19 16:07:13.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:13.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:13.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:13.348][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:13.348][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:13.350][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:13.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:13.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:13.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:13.356][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:13.356][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:13.356][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:13.357][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2025-04-19 16:07:13.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:13.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:13.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:13.364][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:13.364][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:13.364][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:13.364][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:13.365][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:13.366][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:13.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:13.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:13.371][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:13.371][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:13.371][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:13.371][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:13.371][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:13.373][self$setField] Set field name to column(s) name.
biodb.TRACE[2025-04-19 16:07:13.374][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:13.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:13.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:13.379][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:13.379][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:13.379][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:13.379][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:13.379][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:13.379][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:13.380][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2025-04-19 16:07:13.382][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:13.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:13.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:13.387][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:13.387][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:13.387][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:13.387][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:13.387][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:13.387][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:13.387][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:13.388][self$setField] Set field description to column(s) description.
biodb.TRACE[2025-04-19 16:07:13.389][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:13.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:13.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:13.545][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:13.545][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:13.545][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:13.545][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:13.545][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:13.545][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:13.545][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:13.545][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:13.576][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O
biodb.INFO [2025-04-19 16:07:13.579][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.INFO [2025-04-19 16:07:13.608][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:13.620][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/1018.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/15939.tsv"
biodb.INFO [2025-04-19 16:07:13.648][biodb::testThat]
biodb.INFO [2025-04-19 16:07:13.650][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-04-19 16:07:13.651][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:13.652][biodb::testThat]
biodb.TRACE[2025-04-19 16:07:13.657][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/testref/entry-comp.csv.file-1018-content.tsv".
biodb.DEBUG[2025-04-19 16:07:13.659][biodb$getFactory()$createEntryFromCo ...] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:07:13.662][biodb$getFactory()$createEntryFromCo ...] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2025-04-19 16:07:13.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:07:13.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:13.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:13.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:13.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:13.685][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:13.685][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:13.685][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:13.685][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:13.685][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:13.685][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:13.685][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:13.685][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:13.686][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:13.686][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:13.686][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:13.686][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:13.686][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:13.686][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:13.686][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:13.686][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:13.688][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:13.688][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:13.688][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:13.688][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:13.688][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:13.688][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:13.688][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:13.688][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:13.689][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:13.689][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:13.689][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:13.689][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:13.689][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:13.689][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:13.689][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:13.689][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:13.691][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:13.691][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:13.691][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:13.691][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:13.691][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:13.691][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:13.691][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:13.691][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:13.692][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:13.692][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:13.692][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:13.692][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:13.692][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:13.692][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:13.692][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:13.692][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:13.694][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:13.694][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:13.694][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:13.694][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:13.694][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:13.694][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:13.694][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:13.694][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:13.695][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:13.695][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:13.695][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:13.695][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:13.695][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:13.695][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:13.695][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:13.695][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.TRACE[2025-04-19 16:07:13.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:13.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:13.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:13.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:13.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.708][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:13.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:13.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:13.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:13.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:13.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:13.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:13.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:13.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:13.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:13.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:13.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:13.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.765][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:13.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:13.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.771][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:13.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:13.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:13.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:13.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.782][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:13.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:13.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:13.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:13.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.792][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:13.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:13.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.798][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:13.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:13.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.803][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:13.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:13.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:13.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:13.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:13.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:13.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:13.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:13.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:13.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:13.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:13.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:13.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:13.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:13.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:13.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:13.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:13.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:13.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:13.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:13.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:13.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:13.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:13.896][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 1018.
biodb.TRACE[2025-04-19 16:07:13.899][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:13.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:13.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.904][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:13.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:13.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.909][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:13.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:13.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.915][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:13.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:13.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:13.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:13.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:13.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:13.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:13.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:13.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:13.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:13.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:13.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:13.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:13.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:13.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:13.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:13.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:13.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:13.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:13.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:13.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:13.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:14.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:14.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:14.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:14.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:14.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.035][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.037][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.039][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.055][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:14.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:14.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:14.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:14.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:14.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:14.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.070][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:14.071][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:14.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:14.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:14.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.090][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:14.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:14.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.095][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:14.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:14.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.100][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:14.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:14.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.104][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:14.106][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:14.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.109][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:14.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:14.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.124][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:14.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:14.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.129][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:14.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:14.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.134][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:14.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:14.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.138][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:14.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:14.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.143][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:14.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:14.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.158][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:14.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:14.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:14.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:14.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.167][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:14.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:14.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.172][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:14.173][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:14.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.177][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:14.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:14.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.206][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.207][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.239][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.240][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.258][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.263][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.268][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.273][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.274][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.276][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.278][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.292][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.293][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.296][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.302][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:14.304][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:14.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.306][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.313][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:14.314][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:14.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.323][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.324][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.333][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.334][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.337][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.343][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.344][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.353][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:14.355][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:14.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.364][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:14.365][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:14.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.385][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/testref/entry-comp.csv.file-15939-content.tsv".
biodb.DEBUG[2025-04-19 16:07:14.410][biodb$getFactory()$createEntryFromCo ...] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:07:14.412][biodb$getFactory()$createEntryFromCo ...] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2025-04-19 16:07:14.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:07:14.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:14.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:14.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:14.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:07:14.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.449][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:14.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:14.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:14.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:14.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.480][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.485][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:14.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:14.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:14.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:14.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:14.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:14.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:14.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:14.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.509][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:14.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:14.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.514][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:14.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:14.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:14.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:14.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:14.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:14.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:14.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:14.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:14.567][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15939.
biodb.TRACE[2025-04-19 16:07:14.585][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:14.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:14.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.590][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:14.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:14.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.595][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:14.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:14.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.600][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:14.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:14.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:14.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:14.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:14.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:14.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:14.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:14.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:14.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:14.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.716][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.717][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.720][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.735][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:14.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:14.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:14.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:14.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:14.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:14.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.750][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:14.751][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:14.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:14.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:14.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.769][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:14.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:14.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.774][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:14.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:14.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.779][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:14.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:14.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.783][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:14.790][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:14.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.793][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:14.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:14.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.807][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:14.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:14.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:14.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:14.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:14.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:14.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.821][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:14.823][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:14.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.825][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:14.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:14.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.841][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:14.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:14.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.846][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:14.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:14.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.850][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:14.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:14.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.856][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:14.857][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:14.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.860][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:14.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:14.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.889][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.891][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.893][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:14.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.924][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.925][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.927][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:14.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.943][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.948][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.953][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.958][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.959][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.961][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.962][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:14.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.977][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:14.978][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:14.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.987][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:14.989][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:14.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:14.991][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:14.998][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:14.999][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:15.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:15.001][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:15.008][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:15.009][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:15.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:15.012][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:15.019][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:15.020][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:15.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:15.022][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:15.029][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:15.031][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:15.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:15.033][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:15.040][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:15.041][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:15.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:15.044][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:15.050][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:15.052][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:15.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:15.054][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:15.067][biodb::testThat]
biodb.INFO [2025-04-19 16:07:15.068][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-04-19 16:07:15.069][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:15.070][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:15.084][private$loadEntries] Creating entries from ids [2]: "1018, 15939".
biodb.DEBUG[2025-04-19 16:07:15.122][conn$getEntryContent] Get Compound CSV File entry content(s) for 2 id(s)...
biodb.TRACE[2025-04-19 16:07:15.136][cch$loadFileContent] Trying to load 2 files from cache: [2]: "1018, 15939".
biodb.INFO [2025-04-19 16:07:15.138][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.149][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.INFO [2025-04-19 16:07:15.150][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.161][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:15.162][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:15.163][conn$getEntryContent] 2 entry content(s) need to be fetched from Compound CSV File database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2025-04-19 16:07:15.165][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:15.166][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:15.167][private$doGetEntryContentFromDb] Entry id: 1018, 15939
biodb.DEBUG[2025-04-19 16:07:15.177][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O
biodb.INFO [2025-04-19 16:07:15.188][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.INFO [2025-04-19 16:07:15.199][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.210][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/1018.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/15939.tsv"
biodb.INFO [2025-04-19 16:07:15.246][biodb::testThat]
biodb.INFO [2025-04-19 16:07:15.247][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-04-19 16:07:15.249][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:15.250][biodb::testThat]
biodb.TRACE[2025-04-19 16:07:15.253][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:15.255][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:15.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:15.257][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:15.259][function(conn, opt)] Testing searchForEntries() with entry "1018" and field "name".
biodb.DEBUG[2025-04-19 16:07:15.271][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2025-04-19 16:07:15.272][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:15.274][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1018".
biodb.INFO [2025-04-19 16:07:15.276][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.287][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:15.288][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.298][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:15.300][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:15.301][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2025-04-19 16:07:15.302][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:15.303][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:15.304][private$doGetEntryContentFromDb] Entry id: 1018
biodb.DEBUG[2025-04-19 16:07:15.308][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O
biodb.INFO [2025-04-19 16:07:15.311][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.INFO [2025-04-19 16:07:15.321][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.332][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/1018.tsv"
biodb.INFO [2025-04-19 16:07:15.357][biodb::testThat]
biodb.INFO [2025-04-19 16:07:15.358][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-04-19 16:07:15.360][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:15.361][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:15.372][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2025-04-19 16:07:15.373][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:15.375][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1018".
biodb.INFO [2025-04-19 16:07:15.377][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.387][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:15.389][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.399][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:15.401][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:15.402][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2025-04-19 16:07:15.403][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:15.405][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:15.406][private$doGetEntryContentFromDb] Entry id: 1018
biodb.DEBUG[2025-04-19 16:07:15.410][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O
biodb.INFO [2025-04-19 16:07:15.412][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.INFO [2025-04-19 16:07:15.422][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.433][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/1018.tsv"
biodb.INFO [2025-04-19 16:07:15.457][biodb::testThat]
biodb.INFO [2025-04-19 16:07:15.458][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-04-19 16:07:15.460][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:15.461][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:15.474][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2025-04-19 16:07:15.476][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:15.477][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1018".
biodb.INFO [2025-04-19 16:07:15.479][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.489][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:15.491][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.506][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:15.508][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:15.509][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2025-04-19 16:07:15.510][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:15.511][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:15.512][private$doGetEntryContentFromDb] Entry id: 1018
biodb.DEBUG[2025-04-19 16:07:15.516][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O
biodb.INFO [2025-04-19 16:07:15.518][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.INFO [2025-04-19 16:07:15.529][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.539][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/1018.tsv"
biodb.TRACE[2025-04-19 16:07:15.574][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:15.576][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:15.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:15.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:15.581][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:15.582][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:15.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:15.586][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:15.589][biodb::testThat]
biodb.INFO [2025-04-19 16:07:15.590][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-04-19 16:07:15.591][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:15.593][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:15.602][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2025-04-19 16:07:15.604][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:15.606][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1018".
biodb.INFO [2025-04-19 16:07:15.607][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.617][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:15.619][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.628][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:15.630][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:15.631][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2025-04-19 16:07:15.632][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:15.633][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:15.634][private$doGetEntryContentFromDb] Entry id: 1018
biodb.DEBUG[2025-04-19 16:07:15.638][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O
biodb.INFO [2025-04-19 16:07:15.640][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.INFO [2025-04-19 16:07:15.650][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.660][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/1018.tsv"
biodb.INFO [2025-04-19 16:07:15.684][biodb::testThat]
biodb.INFO [2025-04-19 16:07:15.685][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-04-19 16:07:15.687][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:15.688][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:15.691][private$loadEntries] Creating entries from ids [2]: "1018, 15939".
biodb.DEBUG[2025-04-19 16:07:15.692][conn$getEntryContent] Get Compound CSV File entry content(s) for 2 id(s)...
biodb.TRACE[2025-04-19 16:07:15.694][cch$loadFileContent] Trying to load 2 files from cache: [2]: "1018, 15939".
biodb.INFO [2025-04-19 16:07:15.696][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.706][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.INFO [2025-04-19 16:07:15.707][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.717][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:15.718][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:15.720][conn$getEntryContent] 2 entry content(s) need to be fetched from Compound CSV File database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2025-04-19 16:07:15.721][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:15.722][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:15.723][private$doGetEntryContentFromDb] Entry id: 1018, 15939
biodb.DEBUG[2025-04-19 16:07:15.728][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O
biodb.INFO [2025-04-19 16:07:15.730][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.INFO [2025-04-19 16:07:15.741][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.751][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/1018.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/15939.tsv"
biodb.INFO [2025-04-19 16:07:15.776][biodb::testThat]
biodb.INFO [2025-04-19 16:07:15.777][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-04-19 16:07:15.778][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:15.780][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:15.783][private$loadEntries] Creating entries from ids [2]: "1018, 15939".
biodb.DEBUG[2025-04-19 16:07:15.784][conn$getEntryContent] Get Compound CSV File entry content(s) for 2 id(s)...
biodb.TRACE[2025-04-19 16:07:15.786][cch$loadFileContent] Trying to load 2 files from cache: [2]: "1018, 15939".
biodb.INFO [2025-04-19 16:07:15.788][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.798][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.INFO [2025-04-19 16:07:15.800][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.810][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:15.811][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:15.812][conn$getEntryContent] 2 entry content(s) need to be fetched from Compound CSV File database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2025-04-19 16:07:15.813][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:15.815][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:15.816][private$doGetEntryContentFromDb] Entry id: 1018, 15939
biodb.DEBUG[2025-04-19 16:07:15.826][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O
biodb.INFO [2025-04-19 16:07:15.828][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.INFO [2025-04-19 16:07:15.839][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.848][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/1018.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/15939.tsv"
biodb.INFO [2025-04-19 16:07:15.873][biodb::testThat]
biodb.INFO [2025-04-19 16:07:15.874][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-04-19 16:07:15.876][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:15.877][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:15.880][private$loadEntries] Creating entries from ids [2]: "1018, 15939".
biodb.DEBUG[2025-04-19 16:07:15.881][conn$getEntryContent] Get Compound CSV File entry content(s) for 2 id(s)...
biodb.TRACE[2025-04-19 16:07:15.883][cch$loadFileContent] Trying to load 2 files from cache: [2]: "1018, 15939".
biodb.INFO [2025-04-19 16:07:15.885][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.895][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.INFO [2025-04-19 16:07:15.896][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.906][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:15.908][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:15.909][conn$getEntryContent] 2 entry content(s) need to be fetched from Compound CSV File database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2025-04-19 16:07:15.910][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:15.911][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:15.913][private$doGetEntryContentFromDb] Entry id: 1018, 15939
biodb.DEBUG[2025-04-19 16:07:15.918][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O
biodb.INFO [2025-04-19 16:07:15.920][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.INFO [2025-04-19 16:07:15.930][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.940][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/1018.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/15939.tsv"
biodb.TRACE[2025-04-19 16:07:15.964][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:15.965][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:15.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:15.968][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:15.969][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:15.970][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:15.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:15.972][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:15.975][biodb::testThat]
biodb.INFO [2025-04-19 16:07:15.977][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-04-19 16:07:15.978][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:15.979][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:15.983][private$loadEntries] Creating entries from ids [2]: "1018, 15939".
biodb.DEBUG[2025-04-19 16:07:15.984][conn$getEntryContent] Get Compound CSV File entry content(s) for 2 id(s)...
biodb.TRACE[2025-04-19 16:07:15.986][cch$loadFileContent] Trying to load 2 files from cache: [2]: "1018, 15939".
biodb.INFO [2025-04-19 16:07:15.987][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:15.998][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.INFO [2025-04-19 16:07:15.999][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:16.009][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:16.010][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:16.012][conn$getEntryContent] 2 entry content(s) need to be fetched from Compound CSV File database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2025-04-19 16:07:16.013][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:16.014][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:16.015][private$doGetEntryContentFromDb] Entry id: 1018, 15939
biodb.DEBUG[2025-04-19 16:07:16.020][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O
biodb.INFO [2025-04-19 16:07:16.022][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.INFO [2025-04-19 16:07:16.032][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:16.042][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/1018.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/15939.tsv"
biodb.INFO [2025-04-19 16:07:16.066][biodb::testThat]
biodb.INFO [2025-04-19 16:07:16.067][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-04-19 16:07:16.068][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:16.069][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:16.073][private$loadEntries] Creating entries from ids [2]: "1018, 15939".
biodb.DEBUG[2025-04-19 16:07:16.074][conn$getEntryContent] Get Compound CSV File entry content(s) for 2 id(s)...
biodb.TRACE[2025-04-19 16:07:16.076][cch$loadFileContent] Trying to load 2 files from cache: [2]: "1018, 15939".
biodb.INFO [2025-04-19 16:07:16.078][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:16.088][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.INFO [2025-04-19 16:07:16.089][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:16.099][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:16.100][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:16.102][conn$getEntryContent] 2 entry content(s) need to be fetched from Compound CSV File database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2025-04-19 16:07:16.103][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:16.104][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:16.105][private$doGetEntryContentFromDb] Entry id: 1018, 15939
biodb.DEBUG[2025-04-19 16:07:16.110][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O
biodb.INFO [2025-04-19 16:07:16.113][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.INFO [2025-04-19 16:07:16.123][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:16.133][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/1018.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/15939.tsv"
biodb.INFO [2025-04-19 16:07:16.163][biodb::testThat]
biodb.INFO [2025-04-19 16:07:16.165][biodb::testThat] Running test function  test.db.copy  (" Database copy works. ").
biodb.INFO [2025-04-19 16:07:16.166][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:16.167][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:16.195][super$initialize] Initialize connector comp.csv.file.1.
biodb.DEBUG[2025-04-19 16:07:16.208][biodb$getFactory()$createConn] Creating new connector comp.csv.file.1 for database class comp.csv.file , with base URL "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/test.db.copy.comp.csv.file.db".
biodb.DEBUG[2025-04-19 16:07:16.211][private$loadEntries] Creating entries from ids [13]: "1018, 1390, 1456, 1549, 1894, 1932, 1997, 10561, 15939, 16750, ...".
biodb.DEBUG[2025-04-19 16:07:16.212][conn$getEntryContent] Get Compound CSV File entry content(s) for 13 id(s)...
biodb.TRACE[2025-04-19 16:07:16.214][cch$loadFileContent] Trying to load 13 files from cache: [13]: "1018, 1390, 1456, 1549, 1894, 1932, 1997, 10561, 15939, 16750, ...".
biodb.INFO [2025-04-19 16:07:16.216][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:16.226][cch$loadFileContent] file.exist = [13]: "FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, ...".
biodb.INFO [2025-04-19 16:07:16.228][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:16.237][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:16.239][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:16.240][conn$getEntryContent] 13 entry content(s) need to be fetched from Compound CSV File database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2025-04-19 16:07:16.242][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:16.243][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:16.244][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456, 1549, 1894, 1932, 1997, 10561, 15939, 16750, 35485, 40304, 64679
biodb.DEBUG[2025-04-19 16:07:16.263][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O
biodb.INFO [2025-04-19 16:07:16.265][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.INFO [2025-04-19 16:07:16.275][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606" for "comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606".
biodb.TRACE[2025-04-19 16:07:16.285][private$doSaveContentToFile] Saving to cache [13]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/1018.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/1390.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/1456.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/1549.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/1894.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/1932.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/1997.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/10561.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/15939.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-f4fae18cde2b392e9dcc8cd01b967606/16750.tsv, ..."
biodb.INFO [2025-04-19 16:07:16.307][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-04-19 16:07:16.309][self$deleteConn] Connector "comp.csv.file" deleted.
biodb.INFO [2025-04-19 16:07:16.311][self$deleteConn] Connector "comp.csv.file.1" deleted.
biodb.DEBUG[2025-04-19 16:07:16.312][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-19 16:07:16.313][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:16.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:16.315][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-04-19 16:07:16.332][biodb::testContext]
biodb.INFO [2025-04-19 16:07:16.333][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:07:16.334][biodb::testContext] Test context - CompSqlite long generic tests
biodb.INFO [2025-04-19 16:07:16.335][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:07:16.336][biodb::testContext]
biodb.INFO [2025-04-19 16:07:16.339][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-19 16:07:16.342][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/definitions.yml".
biodb.DEBUG[2025-04-19 16:07:16.347][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:07:16.348][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-19 16:07:16.350][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-19 16:07:16.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.354][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-19 16:07:16.355][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-19 16:07:16.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.360][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-19 16:07:16.361][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-19 16:07:16.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.365][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-19 16:07:16.366][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-19 16:07:16.368][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-19 16:07:16.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.372][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-19 16:07:16.373][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-19 16:07:16.374][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-19 16:07:16.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.379][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-19 16:07:16.380][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-19 16:07:16.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.384][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-19 16:07:16.385][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-19 16:07:16.387][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-19 16:07:16.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.391][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-19 16:07:16.392][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-19 16:07:16.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.397][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-19 16:07:16.398][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-19 16:07:16.399][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-19 16:07:16.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.403][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-19 16:07:16.405][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-19 16:07:16.406][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-19 16:07:16.407][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-19 16:07:16.408][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-19 16:07:16.410][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-19 16:07:16.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.414][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-19 16:07:16.415][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-19 16:07:16.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.420][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-19 16:07:16.421][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-19 16:07:16.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.425][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-19 16:07:16.427][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-19 16:07:16.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.431][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-19 16:07:16.432][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-19 16:07:16.433][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.437][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-19 16:07:16.438][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-19 16:07:16.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.442][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-19 16:07:16.443][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-19 16:07:16.447][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-19 16:07:16.448][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.451][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-19 16:07:16.452][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-19 16:07:16.453][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-19 16:07:16.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.458][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-19 16:07:16.460][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:16.461][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-19 16:07:16.462][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:16.464][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:07:16.465][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:16.466][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:07:16.467][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:16.469][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:07:16.470][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-19 16:07:16.471][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:07:16.472][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:16.473][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-19 16:07:16.475][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:07:16.476][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:16.477][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:16.479][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:07:16.479][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:16.479][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:16.479][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:16.479][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:16.481][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:07:16.482][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:16.484][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:16.486][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:07:16.487][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:16.489][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:16.491][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:07:16.492][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:16.494][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:07:16.495][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:07:16.496][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:16.498][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:16.499][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-19 16:07:16.501][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:16.502][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-19 16:07:16.503][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:16.505][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:07:16.506][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:16.507][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:07:16.508][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:16.509][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:07:16.511][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-19 16:07:16.518][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:07:16.519][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:16.521][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-19 16:07:16.522][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:07:16.523][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:16.524][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:16.525][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:07:16.525][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:16.525][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:16.525][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:16.525][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:16.527][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:07:16.528][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:16.529][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:16.530][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:07:16.531][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:16.532][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:16.533][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:07:16.535][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:16.536][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:07:16.537][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:07:16.538][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:16.539][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:16.540][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-19 16:07:16.542][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:16.544][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-19 16:07:16.545][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:16.546][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:07:16.547][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:16.548][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:07:16.550][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:16.551][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:07:16.552][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-19 16:07:16.553][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:07:16.554][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:16.555][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-19 16:07:16.557][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:07:16.558][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:16.559][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:16.560][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:16.561][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:07:16.563][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:16.564][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:16.565][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:07:16.566][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:16.567][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:16.568][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:07:16.570][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:16.571][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:07:16.572][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:07:16.573][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:16.574][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:16.576][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-19 16:07:16.578][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:16.579][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-19 16:07:16.580][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:16.581][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:07:16.582][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:16.583][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:07:16.585][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:16.586][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:07:16.587][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-19 16:07:16.588][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:07:16.589][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:16.591][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-19 16:07:16.592][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:07:16.593][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:16.594][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:16.595][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:16.596][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:07:16.598][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:16.599][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:16.600][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:07:16.601][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:16.602][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:16.603][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:07:16.604][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:16.605][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:07:16.607][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:07:16.608][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:16.609][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:16.610][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:07:16.612][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:16.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:16.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:16.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:16.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:16.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:16.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.630][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:16.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:16.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:16.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:16.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:16.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:16.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:16.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:16.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:16.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:16.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:16.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:16.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.663][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:16.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:16.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:16.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:16.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:16.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:16.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:16.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:16.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:16.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:16.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:16.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:16.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:16.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:16.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:16.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:16.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.708][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-19 16:07:16.710][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-19 16:07:16.712][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-19 16:07:16.713][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-19 16:07:16.715][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-19 16:07:16.716][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-19 16:07:16.718][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-19 16:07:16.719][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-19 16:07:16.721][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-19 16:07:16.723][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-19 16:07:16.724][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-19 16:07:16.726][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-19 16:07:16.727][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-19 16:07:16.729][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-19 16:07:16.730][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-19 16:07:16.732][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-19 16:07:16.733][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-19 16:07:16.735][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-19 16:07:16.736][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-19 16:07:16.738][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-19 16:07:16.740][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-19 16:07:16.741][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-19 16:07:16.743][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-19 16:07:16.744][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-19 16:07:16.746][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-19 16:07:16.747][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-19 16:07:16.749][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-19 16:07:16.750][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:16.752][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-19 16:07:16.753][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-19 16:07:16.755][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-19 16:07:16.757][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-19 16:07:16.758][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-19 16:07:16.760][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-19 16:07:16.761][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-19 16:07:16.763][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-19 16:07:16.764][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-19 16:07:16.766][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-19 16:07:16.767][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-19 16:07:16.769][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-19 16:07:16.770][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-19 16:07:16.772][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-19 16:07:16.774][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-19 16:07:16.775][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-19 16:07:16.777][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-19 16:07:16.778][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-19 16:07:16.780][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-19 16:07:16.781][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-19 16:07:16.783][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-19 16:07:16.784][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-19 16:07:16.786][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-19 16:07:16.787][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-19 16:07:16.789][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-19 16:07:16.791][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-19 16:07:16.792][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-19 16:07:16.794][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-19 16:07:16.795][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-19 16:07:16.797][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-19 16:07:16.798][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-19 16:07:16.800][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-19 16:07:16.801][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-19 16:07:16.803][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-19 16:07:16.804][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-19 16:07:16.806][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-19 16:07:16.808][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-19 16:07:16.809][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-19 16:07:16.811][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-19 16:07:16.812][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-19 16:07:16.814][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-19 16:07:16.815][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-19 16:07:16.817][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-19 16:07:16.818][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-19 16:07:16.820][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-19 16:07:16.821][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-19 16:07:16.823][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-19 16:07:16.825][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-19 16:07:16.826][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-19 16:07:16.828][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-19 16:07:16.829][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-19 16:07:16.831][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-19 16:07:16.832][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-19 16:07:16.834][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-19 16:07:16.835][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-19 16:07:16.837][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-19 16:07:16.839][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-04-19 16:07:16.847][super$initialize] Initialize connector comp.sqlite.
biodb.DEBUG[2025-04-19 16:07:16.848][biodb$getFactory()$createConn] Creating new connector comp.sqlite for database class comp.sqlite , with base URL "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/generated/chebi_extract.sqlite".
biodb.INFO [2025-04-19 16:07:16.852][biodb::testThat]
biodb.INFO [2025-04-19 16:07:16.853][biodb::testThat] Running test function  test_cache_for_local_db  (" We can use the cache system for a local database. ").
biodb.INFO [2025-04-19 16:07:16.854][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:16.855][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:16.857][bdb$getConfig()$set] Set key use.cache.for.local.db to TRUE.
biodb.DEBUG[2025-04-19 16:07:16.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:16.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:16.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:16.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:16.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:16.867][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2025-04-19 16:07:16.868][conn$getEntryContent] Get Compound SQLite entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:16.872][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1018".
biodb.INFO [2025-04-19 16:07:16.874][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:16.884][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:16.885][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:16.895][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:16.897][conn$getEntryContent] 0 Compound SQLite entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:16.898][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound SQLite database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/generated/chebi_extract.sqlite".
biodb.DEBUG[2025-04-19 16:07:16.899][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:16.900][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2025-04-19 16:07:16.925][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:16.927][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:16.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:16.929][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:16.931][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:16.932][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:16.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:16.935][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:16.938][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:16.939][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:16.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:16.941][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:16.943][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:16.945][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:16.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:16.947][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:16.949][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.INFO [2025-04-19 16:07:16.961][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:16.971][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39/1018.json"
biodb.INFO [2025-04-19 16:07:16.995][biodb::testThat]
biodb.INFO [2025-04-19 16:07:16.997][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-04-19 16:07:16.998][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:16.999][biodb::testThat]
biodb.TRACE[2025-04-19 16:07:17.003][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/testref/entry-comp.sqlite-1018-content.json".
biodb.DEBUG[2025-04-19 16:07:17.005][biodb$getFactory()$createEntryFromCo ...] Creating Compound SQLite entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:07:17.008][biodb$getFactory()$createEntryFromCo ...] Parsing 1 Compound SQLite entries.
biodb.DEBUG[2025-04-19 16:07:17.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:07:17.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:17.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:17.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:17.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:07:17.019][entry.fields$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:07:17.020][entry.fields$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:07:17.021][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.022][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.024][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.TRACE[2025-04-19 16:07:17.025][entry.fields$get] Asked field names are: aa.seq.length.
biodb.TRACE[2025-04-19 16:07:17.026][entry.fields$get] Realnames of fields are: aa.seq.length.
biodb.TRACE[2025-04-19 16:07:17.027][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.029][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.030][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.030][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.TRACE[2025-04-19 16:07:17.031][entry.fields$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:07:17.032][entry.fields$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:07:17.034][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.035][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.036][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.036][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.036][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.TRACE[2025-04-19 16:07:17.037][entry.fields$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:17.038][entry.fields$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:17.040][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.041][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.042][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.042][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.042][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.042][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.TRACE[2025-04-19 16:07:17.043][entry.fields$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:07:17.045][entry.fields$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:07:17.046][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.047][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.048][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.048][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.048][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.048][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.048][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.TRACE[2025-04-19 16:07:17.049][entry.fields$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-19 16:07:17.051][entry.fields$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:17.052][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.053][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.054][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.054][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.054][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.054][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.054][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.054][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.TRACE[2025-04-19 16:07:17.056][entry.fields$get] Asked field names are: catalytic.activity.
biodb.TRACE[2025-04-19 16:07:17.057][entry.fields$get] Realnames of fields are: catalytic.activity.
biodb.TRACE[2025-04-19 16:07:17.058][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.059][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.060][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.060][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.060][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.060][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.060][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.060][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.060][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.TRACE[2025-04-19 16:07:17.062][entry.fields$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:07:17.063][entry.fields$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:07:17.064][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.065][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.067][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.067][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.067][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.067][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.067][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.067][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.067][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.067][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.TRACE[2025-04-19 16:07:17.068][entry.fields$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:07:17.069][entry.fields$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:17.070][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.071][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.073][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.073][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.073][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.073][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.073][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.073][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.073][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.073][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.073][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.TRACE[2025-04-19 16:07:17.074][entry.fields$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-19 16:07:17.075][entry.fields$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-19 16:07:17.077][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.078][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.079][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.079][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.079][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.079][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.079][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.079][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.079][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.079][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.079][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.079][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.TRACE[2025-04-19 16:07:17.080][entry.fields$get] Asked field names are: chrom.col.constructor.
biodb.TRACE[2025-04-19 16:07:17.082][entry.fields$get] Realnames of fields are: chrom.col.constructor.
biodb.TRACE[2025-04-19 16:07:17.083][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.084][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.085][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.085][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.085][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.085][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.085][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.085][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.085][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.085][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.085][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.085][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.085][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.TRACE[2025-04-19 16:07:17.086][entry.fields$get] Asked field names are: chrom.col.diameter.
biodb.TRACE[2025-04-19 16:07:17.088][entry.fields$get] Realnames of fields are: chrom.col.diameter.
biodb.TRACE[2025-04-19 16:07:17.089][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.090][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.091][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.091][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.091][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.091][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.091][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.091][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.091][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.091][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.091][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.091][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.091][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.091][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.TRACE[2025-04-19 16:07:17.093][entry.fields$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:17.094][entry.fields$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:17.095][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.096][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.097][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.097][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.097][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.097][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.097][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.097][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.097][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.097][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.097][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.097][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.097][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.097][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.097][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.TRACE[2025-04-19 16:07:17.099][entry.fields$get] Asked field names are: chrom.col.length.
biodb.TRACE[2025-04-19 16:07:17.100][entry.fields$get] Realnames of fields are: chrom.col.length.
biodb.TRACE[2025-04-19 16:07:17.101][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.102][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.104][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.104][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.104][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.104][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.104][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.104][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.104][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.104][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.104][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.104][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.104][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.104][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.104][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.104][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.TRACE[2025-04-19 16:07:17.105][entry.fields$get] Asked field names are: chrom.col.method.protocol.
biodb.TRACE[2025-04-19 16:07:17.106][entry.fields$get] Realnames of fields are: chrom.col.method.protocol.
biodb.TRACE[2025-04-19 16:07:17.107][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.109][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.110][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.110][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.110][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.110][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.110][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.110][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.110][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.110][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.110][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.110][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.110][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.110][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.110][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.110][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.110][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.TRACE[2025-04-19 16:07:17.111][entry.fields$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:17.113][entry.fields$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:17.114][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.115][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.116][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.116][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.116][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.116][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.116][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.116][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.116][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.116][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.116][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.116][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.116][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.116][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.116][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.116][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.116][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.116][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.TRACE[2025-04-19 16:07:17.117][entry.fields$get] Asked field names are: chrom.flow.gradient.
biodb.TRACE[2025-04-19 16:07:17.119][entry.fields$get] Realnames of fields are: chrom.flow.gradient.
biodb.TRACE[2025-04-19 16:07:17.120][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.121][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.122][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.122][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.122][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.122][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.122][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.122][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.122][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.122][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.122][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.122][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.122][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.122][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.122][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.122][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.122][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.122][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.122][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.TRACE[2025-04-19 16:07:17.124][entry.fields$get] Asked field names are: chrom.flow.rate.
biodb.TRACE[2025-04-19 16:07:17.125][entry.fields$get] Realnames of fields are: chrom.flow.rate.
biodb.TRACE[2025-04-19 16:07:17.126][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.127][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.128][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.128][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.128][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.128][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.128][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.128][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.128][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.128][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.128][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.128][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.128][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.128][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.128][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.128][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.128][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.128][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.128][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.128][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.TRACE[2025-04-19 16:07:17.130][entry.fields$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:17.131][entry.fields$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:17.132][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.133][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.135][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.135][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.135][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.135][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.135][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.135][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.135][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.135][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.135][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.135][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.135][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.135][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.135][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.135][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.135][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.135][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.135][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.135][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.135][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.TRACE[2025-04-19 16:07:17.136][entry.fields$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:07:17.137][entry.fields$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:07:17.139][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.140][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.141][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.141][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.141][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.141][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.141][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.141][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.141][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.141][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.141][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.141][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.141][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.141][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.141][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.141][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.141][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.141][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.141][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.141][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.141][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.141][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.TRACE[2025-04-19 16:07:17.142][entry.fields$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:07:17.144][entry.fields$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:07:17.145][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.146][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.147][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.147][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.147][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.147][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.147][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.147][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.147][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.147][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.147][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.147][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.147][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.147][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.147][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.147][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.147][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.147][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.147][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.147][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.147][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.147][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.147][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.TRACE[2025-04-19 16:07:17.149][entry.fields$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:17.150][entry.fields$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:17.151][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.152][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.153][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.TRACE[2025-04-19 16:07:17.155][entry.fields$get] Asked field names are: chrom.solvent.
biodb.TRACE[2025-04-19 16:07:17.156][entry.fields$get] Realnames of fields are: chrom.solvent.
biodb.TRACE[2025-04-19 16:07:17.157][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.159][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.160][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.TRACE[2025-04-19 16:07:17.161][entry.fields$get] Asked field names are: cofactor.
biodb.TRACE[2025-04-19 16:07:17.163][entry.fields$get] Realnames of fields are: cofactor.
biodb.TRACE[2025-04-19 16:07:17.164][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.165][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.166][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.TRACE[2025-04-19 16:07:17.168][entry.fields$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:17.169][entry.fields$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:17.170][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.171][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.173][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.TRACE[2025-04-19 16:07:17.174][entry.fields$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:07:17.175][entry.fields$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:07:17.176][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.178][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.179][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.TRACE[2025-04-19 16:07:17.180][entry.fields$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:07:17.182][entry.fields$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:07:17.183][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.184][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.185][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.TRACE[2025-04-19 16:07:17.187][entry.fields$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:07:17.188][entry.fields$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:07:17.189][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.190][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.192][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.TRACE[2025-04-19 16:07:17.193][entry.fields$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:07:17.195][entry.fields$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:07:17.196][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.197][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.198][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.TRACE[2025-04-19 16:07:17.200][entry.fields$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:07:17.201][entry.fields$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:07:17.202][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.203][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.204][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.TRACE[2025-04-19 16:07:17.206][entry.fields$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.207][entry.fields$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.208][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.210][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.211][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.TRACE[2025-04-19 16:07:17.212][entry.fields$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-19 16:07:17.214][entry.fields$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-19 16:07:17.215][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.216][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.217][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.TRACE[2025-04-19 16:07:17.219][entry.fields$get] Asked field names are: composition.
biodb.TRACE[2025-04-19 16:07:17.220][entry.fields$get] Realnames of fields are: composition.
biodb.TRACE[2025-04-19 16:07:17.221][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.222][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.224][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.TRACE[2025-04-19 16:07:17.225][entry.fields$get] Asked field names are: compound.id.
biodb.TRACE[2025-04-19 16:07:17.227][entry.fields$get] Realnames of fields are: compound.id.
biodb.TRACE[2025-04-19 16:07:17.228][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.229][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.230][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.TRACE[2025-04-19 16:07:17.232][entry.fields$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:17.233][entry.fields$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:17.234][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.235][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.237][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.TRACE[2025-04-19 16:07:17.238][entry.fields$get] Asked field names are: ec.
biodb.TRACE[2025-04-19 16:07:17.240][entry.fields$get] Realnames of fields are: ec.
biodb.TRACE[2025-04-19 16:07:17.241][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.242][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.243][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.TRACE[2025-04-19 16:07:17.245][entry.fields$get] Asked field names are: equation.
biodb.TRACE[2025-04-19 16:07:17.246][entry.fields$get] Realnames of fields are: equation.
biodb.TRACE[2025-04-19 16:07:17.247][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.248][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.250][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.TRACE[2025-04-19 16:07:17.251][entry.fields$get] Asked field names are: expasy.enzyme.id.
biodb.TRACE[2025-04-19 16:07:17.253][entry.fields$get] Realnames of fields are: expasy.enzyme.id.
biodb.TRACE[2025-04-19 16:07:17.254][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.255][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.256][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.TRACE[2025-04-19 16:07:17.258][entry.fields$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:17.259][entry.fields$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:17.260][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.261][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.263][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.TRACE[2025-04-19 16:07:17.264][entry.fields$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:07:17.266][entry.fields$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:07:17.267][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.268][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.269][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.TRACE[2025-04-19 16:07:17.271][entry.fields$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-19 16:07:17.272][entry.fields$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-19 16:07:17.273][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.274][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.276][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.TRACE[2025-04-19 16:07:17.277][entry.fields$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:07:17.279][entry.fields$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:07:17.280][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.281][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.282][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.TRACE[2025-04-19 16:07:17.284][entry.fields$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:07:17.285][entry.fields$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:07:17.286][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.287][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.289][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.TRACE[2025-04-19 16:07:17.290][entry.fields$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:17.292][entry.fields$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:17.293][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.294][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.295][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.TRACE[2025-04-19 16:07:17.297][entry.fields$get] Asked field names are: kegg.genes.id.
biodb.TRACE[2025-04-19 16:07:17.298][entry.fields$get] Realnames of fields are: kegg.genes.id.
biodb.TRACE[2025-04-19 16:07:17.299][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.301][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.302][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.TRACE[2025-04-19 16:07:17.309][entry.fields$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:07:17.311][entry.fields$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:07:17.312][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.313][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.314][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.TRACE[2025-04-19 16:07:17.316][entry.fields$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:17.317][entry.fields$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:17.319][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.320][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.321][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.TRACE[2025-04-19 16:07:17.323][entry.fields$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.324][entry.fields$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.325][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.326][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.327][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.TRACE[2025-04-19 16:07:17.329][entry.fields$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:17.330][entry.fields$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:17.332][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.333][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.334][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.TRACE[2025-04-19 16:07:17.336][entry.fields$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:17.337][entry.fields$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:17.338][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.339][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.341][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.TRACE[2025-04-19 16:07:17.342][entry.fields$get] Asked field names are: ms.level.
biodb.TRACE[2025-04-19 16:07:17.344][entry.fields$get] Realnames of fields are: ms.level.
biodb.TRACE[2025-04-19 16:07:17.345][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.346][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.347][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.TRACE[2025-04-19 16:07:17.349][entry.fields$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:17.350][entry.fields$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:17.351][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.353][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.354][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.TRACE[2025-04-19 16:07:17.356][entry.fields$get] Asked field names are: msdev.
biodb.TRACE[2025-04-19 16:07:17.357][entry.fields$get] Realnames of fields are: msdev.
biodb.TRACE[2025-04-19 16:07:17.358][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.359][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.361][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.TRACE[2025-04-19 16:07:17.362][entry.fields$get] Asked field names are: msdevtype.
biodb.TRACE[2025-04-19 16:07:17.364][entry.fields$get] Realnames of fields are: msdevtype.
biodb.TRACE[2025-04-19 16:07:17.365][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.366][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.367][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.TRACE[2025-04-19 16:07:17.369][entry.fields$get] Asked field names are: msprecannot.
biodb.TRACE[2025-04-19 16:07:17.370][entry.fields$get] Realnames of fields are: msprecannot.
biodb.TRACE[2025-04-19 16:07:17.372][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.373][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.374][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.TRACE[2025-04-19 16:07:17.376][entry.fields$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:17.377][entry.fields$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:17.378][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.379][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.381][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2025-04-19 16:07:17.383][entry.fields$get] Asked field names are: mstype.
biodb.TRACE[2025-04-19 16:07:17.384][entry.fields$get] Realnames of fields are: mstype.
biodb.TRACE[2025-04-19 16:07:17.385][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.386][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.387][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.TRACE[2025-04-19 16:07:17.389][entry.fields$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:17.390][entry.fields$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:17.392][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.393][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.394][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.TRACE[2025-04-19 16:07:17.396][entry.fields$get] Asked field names are: nb.compounds.
biodb.TRACE[2025-04-19 16:07:17.397][entry.fields$get] Realnames of fields are: nb.compounds.
biodb.TRACE[2025-04-19 16:07:17.398][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.399][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.401][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.TRACE[2025-04-19 16:07:17.403][entry.fields$get] Asked field names are: nb.peaks.
biodb.TRACE[2025-04-19 16:07:17.404][entry.fields$get] Realnames of fields are: nb.peaks.
biodb.TRACE[2025-04-19 16:07:17.405][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.406][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.407][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.TRACE[2025-04-19 16:07:17.409][entry.fields$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:07:17.411][entry.fields$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:07:17.412][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.413][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.414][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.TRACE[2025-04-19 16:07:17.416][entry.fields$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:07:17.418][entry.fields$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:07:17.419][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.420][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:17.421][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.TRACE[2025-04-19 16:07:17.423][entry.fields$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:07:17.424][entry.fields$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:07:17.426][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.427][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:17.428][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.TRACE[2025-04-19 16:07:17.430][entry.fields$get] Asked field names are: nt.seq.
biodb.TRACE[2025-04-19 16:07:17.431][entry.fields$get] Realnames of fields are: nt.seq.
biodb.TRACE[2025-04-19 16:07:17.433][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.434][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:17.435][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.TRACE[2025-04-19 16:07:17.437][entry.fields$get] Asked field names are: nt.seq.length.
biodb.TRACE[2025-04-19 16:07:17.438][entry.fields$get] Realnames of fields are: nt.seq.length.
biodb.TRACE[2025-04-19 16:07:17.440][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.441][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:17.442][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.TRACE[2025-04-19 16:07:17.444][entry.fields$get] Asked field names are: organism.
biodb.TRACE[2025-04-19 16:07:17.445][entry.fields$get] Realnames of fields are: organism.
biodb.TRACE[2025-04-19 16:07:17.446][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.448][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.449][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.TRACE[2025-04-19 16:07:17.451][entry.fields$get] Asked field names are: pathway.class.
biodb.TRACE[2025-04-19 16:07:17.452][entry.fields$get] Realnames of fields are: pathway.class.
biodb.TRACE[2025-04-19 16:07:17.453][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.455][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:17.456][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.TRACE[2025-04-19 16:07:17.458][entry.fields$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:17.459][entry.fields$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:17.460][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.461][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:17.463][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.TRACE[2025-04-19 16:07:17.465][entry.fields$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:17.466][entry.fields$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:17.467][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.468][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:17.470][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.TRACE[2025-04-19 16:07:17.472][entry.fields$get] Asked field names are: peak.error.ppm.
biodb.TRACE[2025-04-19 16:07:17.473][entry.fields$get] Realnames of fields are: peak.error.ppm.
biodb.TRACE[2025-04-19 16:07:17.474][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.475][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:17.477][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.TRACE[2025-04-19 16:07:17.479][entry.fields$get] Asked field names are: peak.formula.
biodb.TRACE[2025-04-19 16:07:17.480][entry.fields$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:17.481][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.482][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:17.484][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.TRACE[2025-04-19 16:07:17.486][entry.fields$get] Asked field names are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:17.487][entry.fields$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:17.488][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.489][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:17.491][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.TRACE[2025-04-19 16:07:17.493][entry.fields$get] Asked field names are: peak.mass.
biodb.TRACE[2025-04-19 16:07:17.494][entry.fields$get] Realnames of fields are: peak.mass.
biodb.TRACE[2025-04-19 16:07:17.495][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.496][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2025-04-19 16:07:17.498][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.TRACE[2025-04-19 16:07:17.500][entry.fields$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:17.501][entry.fields$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:17.502][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.503][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2025-04-19 16:07:17.505][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.TRACE[2025-04-19 16:07:17.507][entry.fields$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:17.508][entry.fields$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:17.509][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.511][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2025-04-19 16:07:17.512][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.TRACE[2025-04-19 16:07:17.514][entry.fields$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:17.515][entry.fields$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:17.517][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.518][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2025-04-19 16:07:17.519][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.TRACE[2025-04-19 16:07:17.521][entry.fields$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:17.522][entry.fields$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:17.524][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.525][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2025-04-19 16:07:17.526][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.TRACE[2025-04-19 16:07:17.528][entry.fields$get] Asked field names are: peaks.
biodb.TRACE[2025-04-19 16:07:17.530][entry.fields$get] Realnames of fields are: peaks.
biodb.TRACE[2025-04-19 16:07:17.531][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.532][entry.fields$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.533][entry.fields$get] Asked field names are: products.
biodb.TRACE[2025-04-19 16:07:17.534][entry.fields$get] Realnames of fields are: products.
biodb.TRACE[2025-04-19 16:07:17.535][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.537][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2025-04-19 16:07:17.538][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.TRACE[2025-04-19 16:07:17.540][entry.fields$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:17.542][entry.fields$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:17.543][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.544][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2025-04-19 16:07:17.545][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.TRACE[2025-04-19 16:07:17.547][entry.fields$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:07:17.549][entry.fields$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:07:17.550][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.551][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:17.552][self$setPropertyValue] Setting property "parsing.expr" to "smiles.canonical".
biodb.TRACE[2025-04-19 16:07:17.555][entry.fields$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:07:17.556][entry.fields$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:07:17.557][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.558][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "smiles.canonical".
biodb.DEBUG[2025-04-19 16:07:17.559][self$setPropertyValue] Setting property "parsing.expr" to "smiles.isomeric".
biodb.TRACE[2025-04-19 16:07:17.562][entry.fields$get] Asked field names are: substrates.
biodb.TRACE[2025-04-19 16:07:17.563][entry.fields$get] Realnames of fields are: substrates.
biodb.TRACE[2025-04-19 16:07:17.564][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.565][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "smiles.canonical".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "smiles.isomeric".
biodb.DEBUG[2025-04-19 16:07:17.567][self$setPropertyValue] Setting property "parsing.expr" to "substrates".
biodb.TRACE[2025-04-19 16:07:17.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:17.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:17.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:17.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:17.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.584][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:17.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:17.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.589][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:17.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:17.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.594][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:17.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:17.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:17.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:17.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:17.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:17.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:17.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:17.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:17.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:17.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:17.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:17.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:17.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:17.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:17.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:17.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:17.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:17.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:17.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:17.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:17.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:17.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:17.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:17.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:17.672][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 1018.
biodb.TRACE[2025-04-19 16:07:17.675][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:17.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:17.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.680][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:17.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:17.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.685][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:17.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:17.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.690][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:17.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:17.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:17.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:17.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:17.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:17.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:17.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:17.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:17.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:17.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:17.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:17.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:17.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:17.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:17.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:17.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:17.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:17.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:17.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:17.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:17.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:17.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.800][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:17.801][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:17.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.803][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:17.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:17.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:17.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:17.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:17.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:17.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:17.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:17.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.833][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:17.835][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:17.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:17.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:17.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.868][ef$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.869][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:17.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.888][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:17.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:17.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.893][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:17.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:17.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.897][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:17.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:17.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.902][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:17.903][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:17.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.906][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.907][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:17.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:17.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:17.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:17.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.927][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:17.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:17.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.932][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:17.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:17.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.936][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:17.938][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:17.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.940][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.941][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:17.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:17.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.956][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:17.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:17.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.961][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:17.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:17.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.966][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:17.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:17.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.971][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:17.972][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:17.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.974][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.975][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:17.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:17.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:17.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:17.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:17.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:17.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:17.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:17.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:18.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:18.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.004][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:18.006][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:18.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:18.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:18.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:18.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:18.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:18.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:18.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:18.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:18.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.038][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:18.039][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:18.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.042][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:18.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:18.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:18.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:18.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:18.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:18.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.070][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:18.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:18.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.075][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:18.076][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:18.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:18.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:18.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:18.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:18.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.099][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:18.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:18.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:18.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:18.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.109][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:18.110][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:18.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.112][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:18.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:18.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.128][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:18.129][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:18.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.138][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:18.140][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:18.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.148][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:18.150][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:18.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.159][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:18.160][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:18.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.169][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:18.170][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:18.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.179][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:18.180][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:18.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.189][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.195][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:18.197][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:18.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.205][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:18.207][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:18.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.216][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:18.217][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:18.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.219][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:18.231][biodb::testThat]
biodb.INFO [2025-04-19 16:07:18.232][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-04-19 16:07:18.234][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:18.235][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:18.237][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2025-04-19 16:07:18.239][conn$getEntryContent] Get Compound SQLite entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:18.241][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1018".
biodb.INFO [2025-04-19 16:07:18.242][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:18.253][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:18.255][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:18.264][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:18.266][conn$getEntryContent] 0 Compound SQLite entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:18.267][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound SQLite database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/generated/chebi_extract.sqlite".
biodb.DEBUG[2025-04-19 16:07:18.268][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:18.269][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2025-04-19 16:07:18.288][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:18.289][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:18.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.294][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:18.295][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:18.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.297][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.301][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:18.302][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:18.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.304][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.306][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:18.308][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:18.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.310][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:18.312][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.INFO [2025-04-19 16:07:18.324][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:18.334][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39/1018.json"
biodb.INFO [2025-04-19 16:07:18.359][biodb::testThat]
biodb.INFO [2025-04-19 16:07:18.361][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-04-19 16:07:18.362][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:18.363][biodb::testThat]
biodb.TRACE[2025-04-19 16:07:18.367][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:18.368][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:18.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.370][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:18.372][function(conn, opt)] Testing searchForEntries() with entry "1018" and field "name".
biodb.DEBUG[2025-04-19 16:07:18.384][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2025-04-19 16:07:18.386][conn$getEntryContent] Get Compound SQLite entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:18.388][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1018".
biodb.INFO [2025-04-19 16:07:18.389][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:18.400][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:18.401][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:18.411][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:18.413][conn$getEntryContent] 0 Compound SQLite entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:18.414][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound SQLite database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/generated/chebi_extract.sqlite".
biodb.DEBUG[2025-04-19 16:07:18.415][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:18.416][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2025-04-19 16:07:18.420][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:18.421][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:18.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.426][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:18.427][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:18.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.432][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:18.434][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:18.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.438][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:18.439][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:18.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.442][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:18.444][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.INFO [2025-04-19 16:07:18.455][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:18.466][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39/1018.json"
biodb.INFO [2025-04-19 16:07:18.491][biodb::testThat]
biodb.INFO [2025-04-19 16:07:18.492][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-04-19 16:07:18.493][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:18.495][biodb::testThat]
biodb.TRACE[2025-04-19 16:07:18.497][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:18.498][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:18.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.501][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:18.515][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2025-04-19 16:07:18.516][conn$getEntryContent] Get Compound SQLite entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:18.518][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1018".
biodb.INFO [2025-04-19 16:07:18.520][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:18.530][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:18.532][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:18.547][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:18.549][conn$getEntryContent] 0 Compound SQLite entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:18.550][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound SQLite database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/generated/chebi_extract.sqlite".
biodb.DEBUG[2025-04-19 16:07:18.551][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:18.553][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2025-04-19 16:07:18.556][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:18.557][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:18.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.560][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.562][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:18.563][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:18.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.565][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.568][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:18.569][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:18.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.574][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:18.575][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:18.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.577][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:18.580][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.INFO [2025-04-19 16:07:18.591][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:18.601][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39/1018.json"
biodb.INFO [2025-04-19 16:07:18.626][biodb::testThat]
biodb.INFO [2025-04-19 16:07:18.627][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-04-19 16:07:18.628][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:18.629][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:18.634][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2025-04-19 16:07:18.635][conn$getEntryContent] Get Compound SQLite entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:18.637][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1018".
biodb.INFO [2025-04-19 16:07:18.638][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:18.649][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:18.650][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:18.660][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:18.662][conn$getEntryContent] 0 Compound SQLite entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:18.663][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound SQLite database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/generated/chebi_extract.sqlite".
biodb.DEBUG[2025-04-19 16:07:18.664][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:18.665][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2025-04-19 16:07:18.669][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:18.670][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:18.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.674][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:18.676][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:18.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.681][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:18.682][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:18.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.685][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.687][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:18.688][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:18.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.690][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:18.693][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.INFO [2025-04-19 16:07:18.704][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:18.714][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39/1018.json"
biodb.TRACE[2025-04-19 16:07:18.738][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:18.740][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:18.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.742][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.743][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:18.745][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:18.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.747][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.748][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:18.750][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:18.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.752][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:18.756][biodb::testThat]
biodb.INFO [2025-04-19 16:07:18.757][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-04-19 16:07:18.758][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:18.759][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:18.769][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2025-04-19 16:07:18.770][conn$getEntryContent] Get Compound SQLite entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:18.772][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1018".
biodb.INFO [2025-04-19 16:07:18.774][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:18.785][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:18.786][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:18.796][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:18.798][conn$getEntryContent] 0 Compound SQLite entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:18.799][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound SQLite database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/generated/chebi_extract.sqlite".
biodb.DEBUG[2025-04-19 16:07:18.801][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:18.802][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2025-04-19 16:07:18.805][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:18.807][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:18.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.811][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:18.813][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:18.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.815][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.818][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:18.819][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:18.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.822][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.824][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:18.825][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:18.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.828][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:18.830][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.INFO [2025-04-19 16:07:18.841][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:18.852][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39/1018.json"
biodb.INFO [2025-04-19 16:07:18.884][biodb::testThat]
biodb.INFO [2025-04-19 16:07:18.885][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-04-19 16:07:18.886][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:18.887][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:18.891][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2025-04-19 16:07:18.892][conn$getEntryContent] Get Compound SQLite entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:18.894][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1018".
biodb.INFO [2025-04-19 16:07:18.896][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:18.906][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:18.908][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:18.918][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:18.920][conn$getEntryContent] 0 Compound SQLite entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:18.921][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound SQLite database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/generated/chebi_extract.sqlite".
biodb.DEBUG[2025-04-19 16:07:18.923][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:18.924][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2025-04-19 16:07:18.927][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:18.929][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:18.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.933][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:18.934][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:18.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.937][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.940][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:18.941][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:18.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:18.945][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:18.947][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:18.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:18.949][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:18.951][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.INFO [2025-04-19 16:07:18.963][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:18.973][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39/1018.json"
biodb.INFO [2025-04-19 16:07:18.998][biodb::testThat]
biodb.INFO [2025-04-19 16:07:18.999][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-04-19 16:07:19.001][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:19.002][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:19.006][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2025-04-19 16:07:19.007][conn$getEntryContent] Get Compound SQLite entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:19.009][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1018".
biodb.INFO [2025-04-19 16:07:19.010][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:19.021][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:19.022][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:19.033][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:19.034][conn$getEntryContent] 0 Compound SQLite entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:19.035][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound SQLite database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/generated/chebi_extract.sqlite".
biodb.DEBUG[2025-04-19 16:07:19.037][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:19.038][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2025-04-19 16:07:19.041][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:19.043][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:19.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.047][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:19.048][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:19.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.054][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:19.055][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:19.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.059][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:19.061][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:19.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.063][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:19.065][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.INFO [2025-04-19 16:07:19.076][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:19.087][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39/1018.json"
biodb.INFO [2025-04-19 16:07:19.111][biodb::testThat]
biodb.INFO [2025-04-19 16:07:19.113][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-04-19 16:07:19.114][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:19.115][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:19.119][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2025-04-19 16:07:19.120][conn$getEntryContent] Get Compound SQLite entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:19.122][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1018".
biodb.INFO [2025-04-19 16:07:19.123][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:19.134][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:19.136][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:19.146][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:19.148][conn$getEntryContent] 0 Compound SQLite entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:19.149][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound SQLite database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/generated/chebi_extract.sqlite".
biodb.DEBUG[2025-04-19 16:07:19.150][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:19.151][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2025-04-19 16:07:19.155][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:19.156][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:19.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.159][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.161][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:19.162][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:19.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.168][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:19.169][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:19.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.174][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:19.176][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:19.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.179][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:19.182][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.INFO [2025-04-19 16:07:19.194][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:19.233][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39/1018.json"
biodb.TRACE[2025-04-19 16:07:19.258][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:19.260][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:19.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.262][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.263][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:19.265][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:19.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.268][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:19.269][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:19.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.272][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:19.275][biodb::testThat]
biodb.INFO [2025-04-19 16:07:19.276][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-04-19 16:07:19.277][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:19.278][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:19.282][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2025-04-19 16:07:19.283][conn$getEntryContent] Get Compound SQLite entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:19.285][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1018".
biodb.INFO [2025-04-19 16:07:19.287][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:19.297][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:19.299][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:19.309][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:19.311][conn$getEntryContent] 0 Compound SQLite entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:19.312][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound SQLite database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/generated/chebi_extract.sqlite".
biodb.DEBUG[2025-04-19 16:07:19.313][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:19.314][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2025-04-19 16:07:19.318][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:19.319][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:19.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.324][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:19.325][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:19.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.327][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.330][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:19.332][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:19.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.334][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.336][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:19.338][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:19.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.340][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:19.342][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.INFO [2025-04-19 16:07:19.354][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:19.364][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39/1018.json"
biodb.INFO [2025-04-19 16:07:19.390][biodb::testThat]
biodb.INFO [2025-04-19 16:07:19.391][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-04-19 16:07:19.392][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:19.394][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:19.397][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2025-04-19 16:07:19.398][conn$getEntryContent] Get Compound SQLite entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:19.400][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1018".
biodb.INFO [2025-04-19 16:07:19.402][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:19.413][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:19.414][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:19.424][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:19.426][conn$getEntryContent] 0 Compound SQLite entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:19.427][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound SQLite database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/generated/chebi_extract.sqlite".
biodb.DEBUG[2025-04-19 16:07:19.428][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:19.429][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2025-04-19 16:07:19.433][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:19.434][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:19.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.439][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:19.440][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:19.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.445][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:19.446][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:19.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.449][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.451][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:19.452][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:19.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.454][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:19.457][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.INFO [2025-04-19 16:07:19.468][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:19.478][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39/1018.json"
biodb.INFO [2025-04-19 16:07:19.504][biodb::testThat]
biodb.INFO [2025-04-19 16:07:19.505][biodb::testThat] Running test function  test.db.copy  (" Database copy works. ").
biodb.INFO [2025-04-19 16:07:19.506][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:19.508][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:19.512][super$initialize] Initialize connector comp.sqlite.1.
biodb.DEBUG[2025-04-19 16:07:19.513][biodb$getFactory()$createConn] Creating new connector comp.sqlite.1 for database class comp.sqlite , with base URL "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/test.db.copy.comp.sqlite.db".
biodb.DEBUG[2025-04-19 16:07:19.517][private$loadEntries] Creating entries from ids [13]: "1018, 1390, 1456, 1549, 1894, 1932, 1997, 10561, 15939, 16750, ...".
biodb.DEBUG[2025-04-19 16:07:19.518][conn$getEntryContent] Get Compound SQLite entry content(s) for 13 id(s)...
biodb.TRACE[2025-04-19 16:07:19.520][cch$loadFileContent] Trying to load 13 files from cache: [13]: "1018, 1390, 1456, 1549, 1894, 1932, 1997, 10561, 15939, 16750, ...".
biodb.INFO [2025-04-19 16:07:19.522][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:19.532][cch$loadFileContent] file.exist = [13]: "FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, ...".
biodb.INFO [2025-04-19 16:07:19.533][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:19.543][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:19.544][conn$getEntryContent] 0 Compound SQLite entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:19.545][conn$getEntryContent] 13 entry content(s) need to be fetched from Compound SQLite database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/generated/chebi_extract.sqlite".
biodb.DEBUG[2025-04-19 16:07:19.547][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:19.548][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2025-04-19 16:07:19.551][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:19.553][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:19.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.563][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:19.565][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:19.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.570][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:19.571][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:19.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.576][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:19.577][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:19.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.582][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:19.584][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:19.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.588][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:19.589][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:19.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.591][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.594][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:19.596][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:19.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.600][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:19.601][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:19.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.603][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.606][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:19.608][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:19.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.612][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:19.614][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:19.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.619][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:19.620][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:19.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.625][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:19.626][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:19.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.628][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.631][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:19.633][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:19.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.635][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.637][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:19.638][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:19.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.643][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:19.645][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:19.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.647][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.649][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:19.651][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:19.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.653][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.656][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:19.657][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:19.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.660][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.662][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:19.663][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:19.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.665][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.668][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:19.670][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:19.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.674][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:19.675][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:19.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.681][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:19.682][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:19.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.684][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.687][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:19.688][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:19.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.693][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:19.694][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:19.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.697][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.699][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:19.700][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:19.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.705][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:19.707][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:19.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.709][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.711][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:19.712][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:19.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.715][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.718][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:19.719][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:19.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.721][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.723][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:19.724][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:19.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.730][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:19.731][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:19.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.733][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.735][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:19.737][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:19.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.739][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.742][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:19.743][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:19.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.745][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.747][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:19.750][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:19.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.756][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:19.757][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:19.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.761][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:19.763][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:19.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.768][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:19.769][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:19.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.774][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:19.775][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:19.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.780][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:19.782][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:19.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.786][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:19.787][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:19.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.792][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:19.794][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:19.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.798][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:19.799][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:19.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.805][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:19.806][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:19.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.810][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:19.812][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:19.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.817][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:19.818][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:19.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.822][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:19.824][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:19.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.829][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:19.830][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:19.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.833][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.835][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:19.836][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:19.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.838][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.841][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:19.843][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:19.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.845][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.847][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:19.848][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:19.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.854][ef$get] Asked field names are: comp_csv_file_id.
biodb.TRACE[2025-04-19 16:07:19.855][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:19.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.857][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.860][ef$get] Asked field names are: comp_sqlite_id.
biodb.TRACE[2025-04-19 16:07:19.862][ef$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:19.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.866][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.870][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:19.872][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:19.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.874][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:19.876][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:19.877][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:19.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:19.880][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:19.882][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.INFO [2025-04-19 16:07:19.897][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39" for "comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39".
biodb.TRACE[2025-04-19 16:07:19.907][private$doSaveContentToFile] Saving to cache [13]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39/1018.json, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39/1390.json, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39/1456.json, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39/1549.json, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39/1894.json, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39/1932.json, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39/1997.json, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39/10561.json, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39/15939.json, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.sqlite-28a0e23ec0145e6ab3b3c43a0609fd39/16750.json, ..."
biodb.INFO [2025-04-19 16:07:19.929][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-04-19 16:07:19.931][self$deleteConn] Connector "comp.sqlite" deleted.
biodb.INFO [2025-04-19 16:07:19.932][self$deleteConn] Connector "comp.sqlite.1" deleted.
biodb.DEBUG[2025-04-19 16:07:19.939][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-19 16:07:19.940][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:19.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:19.942][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:19.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-04-19 16:07:19.952][biodb::testContext]
biodb.INFO [2025-04-19 16:07:19.953][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:07:19.955][biodb::testContext] Test context - MassCsvFile long generic tests
biodb.INFO [2025-04-19 16:07:19.956][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:07:19.957][biodb::testContext]
biodb.INFO [2025-04-19 16:07:19.959][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-19 16:07:19.963][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/definitions.yml".
biodb.DEBUG[2025-04-19 16:07:19.968][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:07:19.969][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-19 16:07:19.970][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-19 16:07:19.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:19.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:19.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:19.975][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-19 16:07:19.976][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-19 16:07:19.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:19.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:19.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:19.980][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-19 16:07:19.981][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-19 16:07:19.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:19.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:19.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:19.986][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-19 16:07:19.987][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-19 16:07:19.988][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-19 16:07:19.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:19.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:19.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:19.993][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-19 16:07:19.994][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-19 16:07:19.995][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-19 16:07:19.996][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:19.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:19.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:19.999][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-19 16:07:20.001][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-19 16:07:20.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.005][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-19 16:07:20.006][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-19 16:07:20.007][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-19 16:07:20.008][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.012][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-19 16:07:20.013][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-19 16:07:20.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.017][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-19 16:07:20.018][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-19 16:07:20.020][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-19 16:07:20.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.024][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-19 16:07:20.025][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-19 16:07:20.026][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-19 16:07:20.027][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-19 16:07:20.029][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-19 16:07:20.030][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-19 16:07:20.031][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.034][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-19 16:07:20.035][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-19 16:07:20.036][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.040][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-19 16:07:20.041][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-19 16:07:20.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.045][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-19 16:07:20.047][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-19 16:07:20.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.051][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-19 16:07:20.052][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-19 16:07:20.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.057][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-19 16:07:20.058][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-19 16:07:20.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.062][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-19 16:07:20.063][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-19 16:07:20.067][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-19 16:07:20.068][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.071][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-19 16:07:20.072][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-19 16:07:20.074][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-19 16:07:20.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.078][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-19 16:07:20.080][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:20.081][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-19 16:07:20.083][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:20.084][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:07:20.085][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:20.086][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:07:20.087][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:20.089][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:07:20.090][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-19 16:07:20.091][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:07:20.092][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:20.093][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-19 16:07:20.095][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:07:20.096][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:20.097][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:20.099][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:07:20.099][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.099][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:20.099][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:20.099][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:20.100][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:07:20.101][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:20.102][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:20.103][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:07:20.104][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:20.106][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:20.107][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:07:20.108][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:20.109][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:07:20.110][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:07:20.111][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:20.113][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:20.114][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-19 16:07:20.116][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:20.117][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-19 16:07:20.118][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:20.120][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:07:20.121][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:20.122][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:07:20.123][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:20.124][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:07:20.126][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-19 16:07:20.127][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:07:20.128][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:20.129][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-19 16:07:20.130][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:07:20.132][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:20.133][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:20.134][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:07:20.134][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.134][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:20.134][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:20.134][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:20.135][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:07:20.136][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:20.137][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:20.139][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:07:20.140][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:20.141][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:20.142][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:07:20.143][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:20.144][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:07:20.145][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:07:20.147][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:20.148][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:20.149][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-19 16:07:20.151][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:20.152][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-19 16:07:20.153][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:20.155][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:07:20.156][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:20.157][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:07:20.158][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:20.159][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:07:20.161][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-19 16:07:20.162][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:07:20.163][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:20.164][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-19 16:07:20.165][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:07:20.167][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:20.168][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:20.169][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:20.170][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:07:20.171][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:20.172][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:20.174][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:07:20.175][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:20.176][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:20.177][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:07:20.178][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:20.179][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:07:20.180][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:07:20.182][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:20.183][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:20.184][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-19 16:07:20.186][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:20.187][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-19 16:07:20.188][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:20.190][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:07:20.191][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:20.192][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:07:20.193][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:20.194][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:07:20.196][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-19 16:07:20.197][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:07:20.198][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:20.199][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-19 16:07:20.200][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:07:20.202][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:20.203][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:20.204][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:20.205][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:07:20.206][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:20.207][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:20.209][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:07:20.210][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:20.211][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:20.212][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:07:20.213][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:20.214][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:07:20.215][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:07:20.217][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:20.218][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:20.219][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:07:20.220][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:20.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:20.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:20.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:20.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:20.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:20.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:20.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:20.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:20.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:20.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.250][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:20.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:20.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.255][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:20.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:20.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.261][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:20.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:20.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.266][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:20.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:20.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.271][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:20.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:20.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.277][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:20.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:20.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:20.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:20.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:20.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:20.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:20.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:20.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:20.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:20.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:20.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:20.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.309][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:20.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:20.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.315][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-19 16:07:20.317][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-19 16:07:20.318][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-19 16:07:20.320][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-19 16:07:20.321][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-19 16:07:20.323][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-19 16:07:20.324][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-19 16:07:20.326][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-19 16:07:20.328][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-19 16:07:20.329][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-19 16:07:20.331][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-19 16:07:20.332][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-19 16:07:20.334][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-19 16:07:20.335][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-19 16:07:20.343][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-19 16:07:20.344][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-19 16:07:20.346][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-19 16:07:20.347][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-19 16:07:20.349][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-19 16:07:20.351][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-19 16:07:20.352][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-19 16:07:20.354][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-19 16:07:20.355][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-19 16:07:20.357][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-19 16:07:20.358][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-19 16:07:20.360][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-19 16:07:20.361][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-19 16:07:20.363][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:20.364][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-19 16:07:20.366][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-19 16:07:20.367][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-19 16:07:20.369][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-19 16:07:20.370][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-19 16:07:20.372][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-19 16:07:20.373][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-19 16:07:20.375][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-19 16:07:20.376][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-19 16:07:20.378][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-19 16:07:20.379][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-19 16:07:20.381][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-19 16:07:20.383][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-19 16:07:20.384][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-19 16:07:20.386][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-19 16:07:20.387][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-19 16:07:20.389][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-19 16:07:20.390][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-19 16:07:20.392][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-19 16:07:20.394][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-19 16:07:20.395][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-19 16:07:20.397][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-19 16:07:20.398][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-19 16:07:20.400][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-19 16:07:20.401][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-19 16:07:20.403][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-19 16:07:20.404][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-19 16:07:20.406][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-19 16:07:20.407][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-19 16:07:20.409][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-19 16:07:20.410][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-19 16:07:20.412][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-19 16:07:20.414][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-19 16:07:20.415][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-19 16:07:20.417][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-19 16:07:20.418][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-19 16:07:20.420][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-19 16:07:20.421][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-19 16:07:20.423][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-19 16:07:20.424][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-19 16:07:20.426][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-19 16:07:20.427][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-19 16:07:20.429][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-19 16:07:20.430][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-19 16:07:20.432][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-19 16:07:20.434][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-19 16:07:20.435][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-19 16:07:20.437][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-19 16:07:20.438][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-19 16:07:20.440][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-19 16:07:20.442][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-19 16:07:20.443][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-19 16:07:20.445][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-19 16:07:20.446][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-19 16:07:20.448][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-19 16:07:20.449][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-19 16:07:20.452][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-04-19 16:07:20.457][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2025-04-19 16:07:20.458][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file , with base URL "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/massbank_extract_full.tsv".
biodb.INFO [2025-04-19 16:07:20.465][biodb::testThat]
biodb.INFO [2025-04-19 16:07:20.466][biodb::testThat] Running test function  test_cache_for_local_db  (" We can use the cache system for a local database. ").
biodb.INFO [2025-04-19 16:07:20.467][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:20.469][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:20.471][bdb$getConfig()$set] Set key use.cache.for.local.db to TRUE.
biodb.DEBUG[2025-04-19 16:07:20.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:20.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:20.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:20.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.480][private$loadEntries] Creating entries from ids [1]: "KNA00776".
biodb.DEBUG[2025-04-19 16:07:20.481][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:20.483][cch$loadFileContent] Trying to load 1 files from cache: [1]: "KNA00776".
biodb.INFO [2025-04-19 16:07:20.485][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:20.496][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:20.498][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:20.508][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:20.510][conn$getEntryContent] 0 Mass spectra CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:20.511][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/massbank_extract_full.tsv".
biodb.DEBUG[2025-04-19 16:07:20.512][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:20.513][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:20.514][private$doGetEntryContentFromDb] Entry id: KNA00776
biodb.INFO [2025-04-19 16:07:20.516][private$initDb] Loading file database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/massbank_extract_full.tsv".
biodb.DEBUG[2025-04-19 16:07:20.519][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2025-04-19 16:07:20.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:20.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:20.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.525][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.527][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2025-04-19 16:07:20.528][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:20.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:20.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.533][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.533][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.534][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:20.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:20.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:20.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.540][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.540][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.540][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.542][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2025-04-19 16:07:20.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:20.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:20.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.552][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.552][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.552][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.552][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.554][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2025-04-19 16:07:20.555][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:20.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:20.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.560][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.560][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.560][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.560][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.560][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.562][self$setField] Set field peak.relative.intensity to column(s) peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:20.563][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:20.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:20.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.568][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.568][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.568][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.568][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.568][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.568][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.569][self$setField] Set field chrom.col.id to column(s) chrom.col.id.
biodb.TRACE[2025-04-19 16:07:20.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:20.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:20.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.575][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.575][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.575][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.575][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.575][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.575][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.575][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.577][self$setField] Set field chrom.rt to column(s) chrom.rt.
biodb.TRACE[2025-04-19 16:07:20.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:20.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:20.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.583][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.583][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.583][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.583][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.583][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.583][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.583][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.583][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.584][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2025-04-19 16:07:20.585][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:20.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:20.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.590][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.590][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.590][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.590][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.590][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.590][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.590][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.590][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.590][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.592][self$setField] Set field name to column(s) name.
biodb.TRACE[2025-04-19 16:07:20.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:20.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:20.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.598][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.598][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.598][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.598][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.598][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.598][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.598][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.598][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.598][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.598][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.599][self$setField] Set field inchi to column(s) inchi.
biodb.TRACE[2025-04-19 16:07:20.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:07:20.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:07:20.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.605][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.605][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.605][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.605][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.605][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.605][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.605][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.605][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.605][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.605][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.605][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.607][self$setField] Set field inchikey to column(s) inchikey.
biodb.TRACE[2025-04-19 16:07:20.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:07:20.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:07:20.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.613][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.613][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.613][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.613][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.613][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.613][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.613][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.613][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.613][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.613][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.613][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.613][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.614][self$setField] Set field cas.id to column(s) cas.id.
biodb.TRACE[2025-04-19 16:07:20.616][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-19 16:07:20.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:20.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.620][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.620][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.620][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.620][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.620][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.620][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.620][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.620][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.620][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.620][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.620][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.620][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.620][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.622][self$setField] Set field chebi.id to column(s) chebi.id.
biodb.TRACE[2025-04-19 16:07:20.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:07:20.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:20.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.628][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.628][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.628][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.628][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.628][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.628][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.628][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.628][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.628][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.628][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.628][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.628][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.628][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.628][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.629][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:20.631][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:20.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:20.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.636][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.636][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.636][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.636][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.636][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.636][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.636][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.636][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.636][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.636][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.636][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.636][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.636][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.636][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.636][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.637][self$setField] Set field ms.level to column(s) ms.level.
biodb.TRACE[2025-04-19 16:07:20.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2025-04-19 16:07:20.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2025-04-19 16:07:20.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.643][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.643][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.643][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.643][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.643][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.643][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.643][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.643][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.643][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.643][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.643][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.643][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.643][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.643][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.643][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.643][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.645][self$setField] Set field peak.mzexp to column(s) peak.mzexp.
biodb.TRACE[2025-04-19 16:07:20.646][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:20.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:20.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.651][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.651][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.651][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.651][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.651][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.651][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.651][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.651][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.651][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.651][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.651][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.651][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.651][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.651][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.651][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.651][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.651][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.652][self$setField] Set field peak.intensity to column(s) peak.intensity.
biodb.TRACE[2025-04-19 16:07:20.654][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:20.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:20.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.658][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.658][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.658][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.658][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.658][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.658][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.658][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.658][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.658][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.658][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.658][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.658][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.658][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.658][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.658][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.658][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.658][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.658][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.660][self$setField] Set field chrom.rt.unit to column(s) chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:20.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:20.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:20.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.666][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.666][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.666][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.666][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.666][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.666][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.666][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.666][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.666][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.666][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.666][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.666][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.666][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.666][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.666][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.666][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.666][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.666][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.666][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.668][self$setField] Set field peak.formula to column(s) peak.formula.
biodb.TRACE[2025-04-19 16:07:20.669][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2025-04-19 16:07:20.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:20.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.674][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.674][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.674][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.674][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.674][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.674][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.674][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.674][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.674][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.674][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.674][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.674][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.674][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.674][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.674][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.674][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.674][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.674][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.674][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.674][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.676][self$setField] Set field msprecannot to column(s) msprecannot.
biodb.TRACE[2025-04-19 16:07:20.677][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2025-04-19 16:07:20.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2025-04-19 16:07:20.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.682][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.682][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.682][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.682][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.682][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.682][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.682][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.682][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.682][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.682][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.682][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.682][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.682][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.682][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.682][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.682][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.682][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.682][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.682][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.682][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.682][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.684][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2025-04-19 16:07:20.685][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:20.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:20.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.690][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.691][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2025-04-19 16:07:20.693][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:20.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:20.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.697][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.704][private$doGetEntryContentFromDb] Content of first entry: accession	smiles	monoisotopic.mass	ms.mode	peak.mztheo	peak.relative.intensity	chrom.col.id	chrom.rt	formula	name	inchi	inchikey	cas.id	chebi.id	kegg.compound.id	ms.level	peak.mzexp	peak.intensity	chrom.rt.unit	peak.formula	msprecannot	msprecmz	peak.attr
KNA00776	C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N	283.091669	neg	282.083871	100	TOSOH TSKgel ODS-100V  5um Part no. 21456	329.85108	C10H13N5O5	Guanosine	InChI=1S/C10H13N5O5/c11-10-13-7-4(8(19)14-10)12-2-15(7)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H3,11,13,14,19)/t3-,5-,6-,9-/m1/s1		118-00-3	16750	C00387	1	NA	NA	s	NA	NA	NA	NA
KNA00776	C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N	283.091669	neg	150.041965	56	TOSOH TSKgel ODS-100V  5um Part no. 21456	329.85108	C10H13N5O5	Guanosine	InChI=1S/C10H13N5O5/c11-10-13-7-4(8(19)14-10)12-2-15(7)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H3,11,13,14,19)/t3-,5-,6-,9-/m1/s1		118-00-3	16750	C00387	1	NA	NA	s	NA	NA	NA	NA
KNA00776	C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N	283.091669	neg	133.015586	5	TOSOH TSKgel ODS-100V  5um Part no. 21456	329.85108	C10H13N5O5	Guanosine	InChI=1S/C10H13N5O5/c11-10-13-7-4(8(19)14-10)12-2-15(7)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H3,11,13,14,19)/t3-,5-,6-,9-/m1/s1		118-00-3	16750	C00387	1	NA	NA	s	NA	NA	NA	NA
biodb.INFO [2025-04-19 16:07:20.707][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.INFO [2025-04-19 16:07:20.725][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:20.735][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/KNA00776.tsv"
biodb.INFO [2025-04-19 16:07:20.760][biodb::testThat]
biodb.INFO [2025-04-19 16:07:20.761][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-04-19 16:07:20.762][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:20.763][biodb::testThat]
biodb.TRACE[2025-04-19 16:07:20.767][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/testref/entry-mass.csv.file-KNA00776-content.tsv".
biodb.DEBUG[2025-04-19 16:07:20.769][biodb$getFactory()$createEntryFromCo ...] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:07:20.772][biodb$getFactory()$createEntryFromCo ...] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2025-04-19 16:07:20.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:07:20.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:20.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:20.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:20.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.784][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.786][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.787][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.789][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.790][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.792][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.794][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.795][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.797][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.798][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.800][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.801][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.803][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.805][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.806][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.808][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.809][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.811][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.812][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.814][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.816][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.817][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "peak.relative.intensity".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "cas.id".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "chebi.id".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "peak.mzexp".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "peak.intensity".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "peak.formula".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:20.819][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.TRACE[2025-04-19 16:07:20.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:20.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:20.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:20.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:20.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.830][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:20.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:20.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:20.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:20.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:20.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:20.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:20.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:20.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:20.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:20.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:20.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:20.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.861][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:20.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:20.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.868][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:20.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:20.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.875][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:20.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:20.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.882][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:20.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:20.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:20.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:20.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:20.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:20.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:20.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:20.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:20.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:20.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:20.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:20.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.913][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:20.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:20.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.918][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:20.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:20.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.923][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:20.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:20.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:07:20.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:07:20.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:07:20.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:07:20.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:07:20.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:07:20.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:07:20.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:07:20.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.948][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-19 16:07:20.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:20.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.953][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-19 16:07:20.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:20.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:07:20.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:20.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:07:20.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:20.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.968][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:20.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:20.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.973][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:20.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:20.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2025-04-19 16:07:20.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2025-04-19 16:07:20.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2025-04-19 16:07:20.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2025-04-19 16:07:20.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.988][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:20.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:20.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.993][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:20.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:20.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:20.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:20.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:20.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:21.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:21.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:21.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.007][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.formula.
biodb.TRACE[2025-04-19 16:07:21.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:21.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.012][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecannot.
biodb.TRACE[2025-04-19 16:07:21.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecannot.
biodb.TRACE[2025-04-19 16:07:21.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.017][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:21.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:21.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.022][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:21.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:21.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.027][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.032][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.037][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.041][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.046][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:21.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:21.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.051][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.056][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.061][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.066][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.070][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.075][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.080][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2025-04-19 16:07:21.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2025-04-19 16:07:21.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.085][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2025-04-19 16:07:21.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2025-04-19 16:07:21.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.090][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2025-04-19 16:07:21.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2025-04-19 16:07:21.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.127][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.132][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.137][private$selectFields] Fields none
biodb.TRACE[2025-04-19 16:07:21.138][private$selectFields] Fields type: peak
biodb.TRACE[2025-04-19 16:07:21.139][private$selectFields] Fields is null: TRUE
biodb.TRACE[2025-04-19 16:07:21.141][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2025-04-19 16:07:21.142][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:21.143][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:21.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.147][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:21.148][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:21.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.150][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.151][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:21.153][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:21.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.155][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.156][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:21.157][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:21.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.161][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.162][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.164][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.165][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.167][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.170][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:21.171][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:21.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.175][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:21.176][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:21.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.178][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.179][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:21.181][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:21.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.183][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.184][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:21.185][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:21.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.189][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:07:21.190][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:07:21.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.192][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:07:21.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:07:21.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.198][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-19 16:07:21.200][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:21.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.202][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:07:21.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:21.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.208][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:21.209][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:21.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.211][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.213][ef$get] Asked field names are: ms.level.
biodb.TRACE[2025-04-19 16:07:21.214][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2025-04-19 16:07:21.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.217][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:21.219][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:21.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.221][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.222][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.223][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.227][private$selectFields] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2025-04-19 16:07:21.228][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.229][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.232][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.233][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.234][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.238][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.239][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.242][private$selectFields] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2025-04-19 16:07:21.244][private$organizeFieldsByGroups] Fields [3]: "peak.mztheo, peak.relative.intensity, peak.mz"
biodb.TRACE[2025-04-19 16:07:21.245][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.246][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.248][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.250][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.251][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.253][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.254][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.256][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.259][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.relative.intensity", "peak.mz"))"
biodb.TRACE[2025-04-19 16:07:21.260][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.265][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.270][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.275][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.280][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.285][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.290][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.294][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.299][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:21.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:21.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:21.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:21.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:21.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:21.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:21.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:21.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:21.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:21.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:21.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:21.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:21.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:21.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.346][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:21.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:21.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.350][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:21.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:21.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.355][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:21.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:21.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.360][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:21.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:21.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:21.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:21.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.370][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:21.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:21.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:21.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:21.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:21.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:21.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:21.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:21.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:21.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:21.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:21.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:21.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:21.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:21.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:21.405][biodb$getFactory()$createEntryFromCo ...] Accession numbers: KNA00776.
biodb.TRACE[2025-04-19 16:07:21.407][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.412][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:21.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:21.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:21.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.441][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:21.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:21.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:21.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:21.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:21.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:21.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:21.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:21.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:21.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:21.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:21.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:21.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:21.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:21.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.482][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:21.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:21.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.487][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:21.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:21.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.491][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:21.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:21.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:21.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:21.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:21.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:21.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:21.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:21.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.525][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:21.526][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:21.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:21.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:21.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:21.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:21.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:21.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:21.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.554][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:21.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:21.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.559][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:21.560][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:21.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.562][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:21.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:21.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:21.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:21.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:21.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:21.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:21.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:21.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.592][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:21.594][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:21.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.596][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:21.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:21.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:21.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:21.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:21.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:21.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:21.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:21.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.627][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:21.628][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:21.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:21.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:21.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.646][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.651][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.656][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.661][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.662][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.664][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.666][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:21.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.680][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.685][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.690][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.695][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.696][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.698][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.699][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:21.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:21.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:21.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:21.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:21.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:21.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:21.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.728][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:21.730][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:21.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.732][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:21.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:21.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:21.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:21.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:21.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:21.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:21.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:21.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.763][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:21.764][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:21.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:21.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:21.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.782][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:21.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:21.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:21.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:21.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.792][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:21.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:21.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.796][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:21.798][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:21.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.801][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:21.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:21.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.816][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:21.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:21.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:21.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:21.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:21.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:21.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.830][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:21.831][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:21.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:21.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:21.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:07:21.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:07:21.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:07:21.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:07:21.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:07:21.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:07:21.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.865][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:07:21.866][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:07:21.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.868][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:07:21.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:07:21.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:07:21.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:07:21.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:07:21.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:07:21.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:07:21.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:07:21.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.899][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:07:21.900][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:07:21.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:07:21.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:07:21.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.924][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-19 16:07:21.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:21.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.929][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-19 16:07:21.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:21.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.934][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-19 16:07:21.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:21.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.939][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-19 16:07:21.940][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:21.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.942][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.943][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-19 16:07:21.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:21.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:07:21.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:21.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:07:21.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:21.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:07:21.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:21.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:07:21.974][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:21.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.976][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:07:21.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:21.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.992][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:21.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:21.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:21.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:21.997][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:21.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:21.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.001][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:22.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:22.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.006][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:22.007][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:22.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.010][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.011][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:22.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:22.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2025-04-19 16:07:22.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2025-04-19 16:07:22.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2025-04-19 16:07:22.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2025-04-19 16:07:22.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2025-04-19 16:07:22.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2025-04-19 16:07:22.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.040][ef$get] Asked field names are: ms.level.
biodb.TRACE[2025-04-19 16:07:22.042][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2025-04-19 16:07:22.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.044][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2025-04-19 16:07:22.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2025-04-19 16:07:22.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:22.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:22.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:22.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:22.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:22.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:22.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.074][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:22.075][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:22.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.078][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:22.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:22.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.093][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:22.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:22.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.098][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:22.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:22.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.103][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:22.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:22.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.108][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:22.109][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:22.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.112][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.113][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:22.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:22.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:22.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:22.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:22.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:22.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:22.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:22.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.142][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:22.143][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:22.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:22.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:22.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.161][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:22.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:22.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.166][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:22.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:22.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.171][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:22.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:22.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.175][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:22.177][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:22.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.179][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.180][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:22.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:22.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.195][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:22.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:22.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.206][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-19 16:07:22.207][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:22.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:07:22.218][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:22.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.227][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:22.228][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:22.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.237][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:22.239][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:22.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.248][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:22.249][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:22.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.258][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:22.260][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:22.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.262][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.269][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:22.270][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:22.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.280][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:07:22.281][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:07:22.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.283][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.290][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:07:22.292][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:07:22.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.294][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.301][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:22.302][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:22.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.304][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.311][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:22.313][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:22.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.315][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.322][ef$get] Asked field names are: ms.level.
biodb.TRACE[2025-04-19 16:07:22.323][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2025-04-19 16:07:22.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.339][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:22.340][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:22.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.349][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:22.351][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:22.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.353][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.360][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:22.361][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:22.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.364][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.370][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:22.372][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:22.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.381][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:22.382][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:22.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.385][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:22.392][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:22.393][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:22.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:22.395][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:22.407][biodb::testThat]
biodb.INFO [2025-04-19 16:07:22.409][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-04-19 16:07:22.410][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:22.411][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:22.414][private$loadEntries] Creating entries from ids [1]: "KNA00776".
biodb.DEBUG[2025-04-19 16:07:22.415][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:22.417][cch$loadFileContent] Trying to load 1 files from cache: [1]: "KNA00776".
biodb.INFO [2025-04-19 16:07:22.418][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:22.429][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:22.430][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:22.440][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:22.442][conn$getEntryContent] 0 Mass spectra CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:22.443][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/massbank_extract_full.tsv".
biodb.DEBUG[2025-04-19 16:07:22.444][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:22.445][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:22.446][private$doGetEntryContentFromDb] Entry id: KNA00776
biodb.DEBUG[2025-04-19 16:07:22.453][private$doGetEntryContentFromDb] Content of first entry: accession	smiles	monoisotopic.mass	ms.mode	peak.mztheo	peak.relative.intensity	chrom.col.id	chrom.rt	formula	name	inchi	inchikey	cas.id	chebi.id	kegg.compound.id	ms.level	peak.mzexp	peak.intensity	chrom.rt.unit	peak.formula	msprecannot	msprecmz	peak.attr
KNA00776	C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N	283.091669	neg	282.083871	100	TOSOH TSKgel ODS-100V  5um Part no. 21456	329.85108	C10H13N5O5	Guanosine	InChI=1S/C10H13N5O5/c11-10-13-7-4(8(19)14-10)12-2-15(7)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H3,11,13,14,19)/t3-,5-,6-,9-/m1/s1		118-00-3	16750	C00387	1	NA	NA	s	NA	NA	NA	NA
KNA00776	C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N	283.091669	neg	150.041965	56	TOSOH TSKgel ODS-100V  5um Part no. 21456	329.85108	C10H13N5O5	Guanosine	InChI=1S/C10H13N5O5/c11-10-13-7-4(8(19)14-10)12-2-15(7)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H3,11,13,14,19)/t3-,5-,6-,9-/m1/s1		118-00-3	16750	C00387	1	NA	NA	s	NA	NA	NA	NA
KNA00776	C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N	283.091669	neg	133.015586	5	TOSOH TSKgel ODS-100V  5um Part no. 21456	329.85108	C10H13N5O5	Guanosine	InChI=1S/C10H13N5O5/c11-10-13-7-4(8(19)14-10)12-2-15(7)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H3,11,13,14,19)/t3-,5-,6-,9-/m1/s1		118-00-3	16750	C00387	1	NA	NA	s	NA	NA	NA	NA
biodb.INFO [2025-04-19 16:07:22.456][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.INFO [2025-04-19 16:07:22.466][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:22.476][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/KNA00776.tsv"
biodb.INFO [2025-04-19 16:07:22.501][biodb::testThat]
biodb.INFO [2025-04-19 16:07:22.502][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-04-19 16:07:22.503][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:22.504][biodb::testThat]
biodb.INFO [2025-04-19 16:07:22.513][biodb::testThat]
biodb.INFO [2025-04-19 16:07:22.514][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-04-19 16:07:22.516][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:22.517][biodb::testThat]
biodb.WARN [2025-04-19 16:07:22.523][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2025-04-19 16:07:22.540][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2025-04-19 16:07:22.552][biodb::testThat]
biodb.INFO [2025-04-19 16:07:22.554][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-04-19 16:07:22.555][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:22.556][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:22.561][private$loadEntries] Creating entries from ids [1]: "KNA00776".
biodb.DEBUG[2025-04-19 16:07:22.562][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:22.564][cch$loadFileContent] Trying to load 1 files from cache: [1]: "KNA00776".
biodb.INFO [2025-04-19 16:07:22.565][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:22.576][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:22.578][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:22.588][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:22.589][conn$getEntryContent] 0 Mass spectra CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:22.590][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/massbank_extract_full.tsv".
biodb.DEBUG[2025-04-19 16:07:22.592][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:22.593][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:22.594][private$doGetEntryContentFromDb] Entry id: KNA00776
biodb.DEBUG[2025-04-19 16:07:22.601][private$doGetEntryContentFromDb] Content of first entry: accession	smiles	monoisotopic.mass	ms.mode	peak.mztheo	peak.relative.intensity	chrom.col.id	chrom.rt	formula	name	inchi	inchikey	cas.id	chebi.id	kegg.compound.id	ms.level	peak.mzexp	peak.intensity	chrom.rt.unit	peak.formula	msprecannot	msprecmz	peak.attr
KNA00776	C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N	283.091669	neg	282.083871	100	TOSOH TSKgel ODS-100V  5um Part no. 21456	329.85108	C10H13N5O5	Guanosine	InChI=1S/C10H13N5O5/c11-10-13-7-4(8(19)14-10)12-2-15(7)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H3,11,13,14,19)/t3-,5-,6-,9-/m1/s1		118-00-3	16750	C00387	1	NA	NA	s	NA	NA	NA	NA
KNA00776	C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N	283.091669	neg	150.041965	56	TOSOH TSKgel ODS-100V  5um Part no. 21456	329.85108	C10H13N5O5	Guanosine	InChI=1S/C10H13N5O5/c11-10-13-7-4(8(19)14-10)12-2-15(7)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H3,11,13,14,19)/t3-,5-,6-,9-/m1/s1		118-00-3	16750	C00387	1	NA	NA	s	NA	NA	NA	NA
KNA00776	C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N	283.091669	neg	133.015586	5	TOSOH TSKgel ODS-100V  5um Part no. 21456	329.85108	C10H13N5O5	Guanosine	InChI=1S/C10H13N5O5/c11-10-13-7-4(8(19)14-10)12-2-15(7)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H3,11,13,14,19)/t3-,5-,6-,9-/m1/s1		118-00-3	16750	C00387	1	NA	NA	s	NA	NA	NA	NA
biodb.INFO [2025-04-19 16:07:22.603][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.INFO [2025-04-19 16:07:22.614][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:22.624][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/KNA00776.tsv"
biodb.INFO [2025-04-19 16:07:22.650][biodb::testThat]
biodb.INFO [2025-04-19 16:07:22.652][biodb::testThat] Running test function  test.getChromCol  (" We can retrieve a list of chromatographic columns. ").
biodb.INFO [2025-04-19 16:07:22.653][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:22.654][biodb::testThat]
biodb.INFO [2025-04-19 16:07:22.682][biodb::testThat]
biodb.INFO [2025-04-19 16:07:22.684][biodb::testThat] Running test function  test.searchMsPeaks.rt  (" We can search for (M/Z, RT) couples, separately. ").
biodb.INFO [2025-04-19 16:07:22.685][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:22.686][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:22.689][private$loadEntries] Creating entries from ids [1]: "KNA00776".
biodb.DEBUG[2025-04-19 16:07:22.690][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:22.692][cch$loadFileContent] Trying to load 1 files from cache: [1]: "KNA00776".
biodb.INFO [2025-04-19 16:07:22.694][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:22.705][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:22.706][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:22.716][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:22.718][conn$getEntryContent] 0 Mass spectra CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:22.719][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/massbank_extract_full.tsv".
biodb.DEBUG[2025-04-19 16:07:22.720][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:22.721][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:22.723][private$doGetEntryContentFromDb] Entry id: KNA00776
biodb.DEBUG[2025-04-19 16:07:22.730][private$doGetEntryContentFromDb] Content of first entry: accession	smiles	monoisotopic.mass	ms.mode	peak.mztheo	peak.relative.intensity	chrom.col.id	chrom.rt	formula	name	inchi	inchikey	cas.id	chebi.id	kegg.compound.id	ms.level	peak.mzexp	peak.intensity	chrom.rt.unit	peak.formula	msprecannot	msprecmz	peak.attr
KNA00776	C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N	283.091669	neg	282.083871	100	TOSOH TSKgel ODS-100V  5um Part no. 21456	329.85108	C10H13N5O5	Guanosine	InChI=1S/C10H13N5O5/c11-10-13-7-4(8(19)14-10)12-2-15(7)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H3,11,13,14,19)/t3-,5-,6-,9-/m1/s1		118-00-3	16750	C00387	1	NA	NA	s	NA	NA	NA	NA
KNA00776	C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N	283.091669	neg	150.041965	56	TOSOH TSKgel ODS-100V  5um Part no. 21456	329.85108	C10H13N5O5	Guanosine	InChI=1S/C10H13N5O5/c11-10-13-7-4(8(19)14-10)12-2-15(7)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H3,11,13,14,19)/t3-,5-,6-,9-/m1/s1		118-00-3	16750	C00387	1	NA	NA	s	NA	NA	NA	NA
KNA00776	C1=NC2=C(N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N	283.091669	neg	133.015586	5	TOSOH TSKgel ODS-100V  5um Part no. 21456	329.85108	C10H13N5O5	Guanosine	InChI=1S/C10H13N5O5/c11-10-13-7-4(8(19)14-10)12-2-15(7)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H3,11,13,14,19)/t3-,5-,6-,9-/m1/s1		118-00-3	16750	C00387	1	NA	NA	s	NA	NA	NA	NA
biodb.INFO [2025-04-19 16:07:22.732][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.INFO [2025-04-19 16:07:22.742][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:22.753][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/KNA00776.tsv"
biodb.INFO [2025-04-19 16:07:22.779][biodb::testThat]
biodb.INFO [2025-04-19 16:07:22.780][biodb::testThat] Running test function  test.searchMsPeaks  (" We can search for several M/Z values, separately. ").
biodb.INFO [2025-04-19 16:07:22.781][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:22.782][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:22.787][private$loadEntries] Creating entries from ids [1]: "AU116602".
biodb.DEBUG[2025-04-19 16:07:22.789][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:22.791][cch$loadFileContent] Trying to load 1 files from cache: [1]: "AU116602".
biodb.INFO [2025-04-19 16:07:22.792][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:22.802][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:22.803][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:22.813][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:22.814][conn$getEntryContent] 0 Mass spectra CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:22.815][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/massbank_extract_full.tsv".
biodb.DEBUG[2025-04-19 16:07:22.817][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:22.818][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:22.819][private$doGetEntryContentFromDb] Entry id: AU116602
biodb.DEBUG[2025-04-19 16:07:22.826][private$doGetEntryContentFromDb] Content of first entry: accession	smiles	monoisotopic.mass	ms.mode	peak.mztheo	peak.relative.intensity	chrom.col.id	chrom.rt	formula	name	inchi	inchikey	cas.id	chebi.id	kegg.compound.id	ms.level	peak.mzexp	peak.intensity	chrom.rt.unit	peak.formula	msprecannot	msprecmz	peak.attr
AU116602	NA	NA	pos	115.0334	100	NA	NA	C4H6N2S	NA	NA	NA	NA	NA	NA	2	NA	6556	s	C4H7N2S+	[M+H]+	115.0324	[M+H]+
biodb.INFO [2025-04-19 16:07:22.828][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.INFO [2025-04-19 16:07:22.838][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:22.847][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/AU116602.tsv"
biodb.INFO [2025-04-19 16:07:22.872][biodb::testThat]
biodb.INFO [2025-04-19 16:07:22.873][biodb::testThat] Running test function  test.searchMsPeaks.with.NA.value  (" Search for peaks with N/A value returns no match. ").
biodb.INFO [2025-04-19 16:07:22.874][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:22.876][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:22.878][private$matchingMzWithSpectra] M/Z values to process [1]: "NA"
biodb.DEBUG[2025-04-19 16:07:22.917][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 0 spectra: none
biodb.DEBUG[2025-04-19 16:07:22.944][private$loadEntries] Creating entries from ids [1]: "AU116602".
biodb.DEBUG[2025-04-19 16:07:22.945][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:22.947][cch$loadFileContent] Trying to load 1 files from cache: [1]: "AU116602".
biodb.INFO [2025-04-19 16:07:22.949][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:22.958][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:22.960][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:22.976][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:22.977][conn$getEntryContent] 0 Mass spectra CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:22.979][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/massbank_extract_full.tsv".
biodb.DEBUG[2025-04-19 16:07:22.980][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:22.981][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:22.982][private$doGetEntryContentFromDb] Entry id: AU116602
biodb.DEBUG[2025-04-19 16:07:22.989][private$doGetEntryContentFromDb] Content of first entry: accession	smiles	monoisotopic.mass	ms.mode	peak.mztheo	peak.relative.intensity	chrom.col.id	chrom.rt	formula	name	inchi	inchikey	cas.id	chebi.id	kegg.compound.id	ms.level	peak.mzexp	peak.intensity	chrom.rt.unit	peak.formula	msprecannot	msprecmz	peak.attr
AU116602	NA	NA	pos	115.0334	100	NA	NA	C4H6N2S	NA	NA	NA	NA	NA	NA	2	NA	6556	s	C4H7N2S+	[M+H]+	115.0324	[M+H]+
biodb.INFO [2025-04-19 16:07:22.991][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.INFO [2025-04-19 16:07:23.002][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:23.012][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/AU116602.tsv"
biodb.INFO [2025-04-19 16:07:23.035][biodb::testThat]
biodb.INFO [2025-04-19 16:07:23.037][biodb::testThat] Running test function  test.db.copy  (" Database copy works. ").
biodb.INFO [2025-04-19 16:07:23.038][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:23.039][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:23.043][super$initialize] Initialize connector mass.csv.file.1.
biodb.DEBUG[2025-04-19 16:07:23.045][biodb$getFactory()$createConn] Creating new connector mass.csv.file.1 for database class mass.csv.file , with base URL "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/test.db.copy.mass.csv.file.db".
biodb.DEBUG[2025-04-19 16:07:23.049][private$loadEntries] Creating entries from ids [20]: "AU116602, AU116606, AU158001, AU158002, AU200951, AU200952, AU200953, AU325851, AU341051, BS003495, ...".
biodb.DEBUG[2025-04-19 16:07:23.050][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 20 id(s)...
biodb.TRACE[2025-04-19 16:07:23.052][cch$loadFileContent] Trying to load 20 files from cache: [20]: "AU116602, AU116606, AU158001, AU158002, AU200951, AU200952, AU200953, AU325851, AU341051, BS003495, ...".
biodb.INFO [2025-04-19 16:07:23.054][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:23.065][cch$loadFileContent] file.exist = [20]: "FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, ...".
biodb.INFO [2025-04-19 16:07:23.067][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:23.076][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:23.078][conn$getEntryContent] 0 Mass spectra CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:23.079][conn$getEntryContent] 20 entry content(s) need to be fetched from Mass spectra CSV File database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/massbank_extract_full.tsv".
biodb.DEBUG[2025-04-19 16:07:23.081][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:23.082][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:23.083][private$doGetEntryContentFromDb] Entry id: AU116602, AU116606, AU158001, AU158002, AU200951, AU200952, AU200953, AU325851, AU341051, BS003495, KNA00596, KNA00776, PR010001, PR010002, PR010003, PR010004, PR010006, PR010007, PR010008, TY000021
biodb.DEBUG[2025-04-19 16:07:23.140][private$doGetEntryContentFromDb] Content of first entry: accession	smiles	monoisotopic.mass	ms.mode	peak.mztheo	peak.relative.intensity	chrom.col.id	chrom.rt	formula	name	inchi	inchikey	cas.id	chebi.id	kegg.compound.id	ms.level	peak.mzexp	peak.intensity	chrom.rt.unit	peak.formula	msprecannot	msprecmz	peak.attr
AU116602	NA	NA	pos	115.0334	100	NA	NA	C4H6N2S	NA	NA	NA	NA	NA	NA	2	NA	6556	s	C4H7N2S+	[M+H]+	115.0324	[M+H]+
biodb.INFO [2025-04-19 16:07:23.143][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.INFO [2025-04-19 16:07:23.153][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:23.162][private$doSaveContentToFile] Saving to cache [20]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/AU116602.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/AU116606.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/AU158001.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/AU158002.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/AU200951.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/AU200952.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/AU200953.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/AU325851.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/AU341051.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/BS003495.tsv, ..."
biodb.INFO [2025-04-19 16:07:23.185][biodb::testContext]
biodb.INFO [2025-04-19 16:07:23.186][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:07:23.187][biodb::testContext] Test context - MassCsvFile long specific tests
biodb.INFO [2025-04-19 16:07:23.188][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:07:23.189][biodb::testContext]
biodb.INFO [2025-04-19 16:07:23.192][biodb::testThat]
biodb.INFO [2025-04-19 16:07:23.193][biodb::testThat] Running test function  test.mass.csv.file.output.columns  (" M/Z match output contains all columns of database. ").
biodb.INFO [2025-04-19 16:07:23.194][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:23.195][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:23.201][private$loadEntries] Creating entries from ids [20]: "AU116602, AU116606, AU158001, AU158002, AU200951, AU200952, AU200953, AU325851, AU341051, BS003495, ...".
biodb.DEBUG[2025-04-19 16:07:23.203][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 20 id(s)...
biodb.TRACE[2025-04-19 16:07:23.205][cch$loadFileContent] Trying to load 20 files from cache: [20]: "AU116602, AU116606, AU158001, AU158002, AU200951, AU200952, AU200953, AU325851, AU341051, BS003495, ...".
biodb.INFO [2025-04-19 16:07:23.206][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:23.216][cch$loadFileContent] file.exist = [20]: "FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, ...".
biodb.INFO [2025-04-19 16:07:23.218][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:23.227][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:23.228][conn$getEntryContent] 0 Mass spectra CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:23.230][conn$getEntryContent] 20 entry content(s) need to be fetched from Mass spectra CSV File database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/massbank_extract_full.tsv".
biodb.DEBUG[2025-04-19 16:07:23.231][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:23.232][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:23.233][private$doGetEntryContentFromDb] Entry id: AU116602, AU116606, AU158001, AU158002, AU200951, AU200952, AU200953, AU325851, AU341051, BS003495, KNA00596, KNA00776, PR010001, PR010002, PR010003, PR010004, PR010006, PR010007, PR010008, TY000021
biodb.DEBUG[2025-04-19 16:07:23.297][private$doGetEntryContentFromDb] Content of first entry: accession	smiles	monoisotopic.mass	ms.mode	peak.mztheo	peak.relative.intensity	chrom.col.id	chrom.rt	formula	name	inchi	inchikey	cas.id	chebi.id	kegg.compound.id	ms.level	peak.mzexp	peak.intensity	chrom.rt.unit	peak.formula	msprecannot	msprecmz	peak.attr
AU116602	NA	NA	pos	115.0334	100	NA	NA	C4H6N2S	NA	NA	NA	NA	NA	NA	2	NA	6556	s	C4H7N2S+	[M+H]+	115.0324	[M+H]+
biodb.INFO [2025-04-19 16:07:23.300][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.INFO [2025-04-19 16:07:23.309][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621" for "mass.csv.file-688976bdaf11e901b90614fca25f0621".
biodb.TRACE[2025-04-19 16:07:23.318][private$doSaveContentToFile] Saving to cache [20]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/AU116602.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/AU116606.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/AU158001.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/AU158002.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/AU200951.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/AU200952.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/AU200953.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/AU325851.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/AU341051.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.csv.file-688976bdaf11e901b90614fca25f0621/BS003495.tsv, ..."
biodb.INFO [2025-04-19 16:07:23.341][biodb::testThat]
biodb.INFO [2025-04-19 16:07:23.343][biodb::testThat] Running test function  test.mass.csv.file.precursor.match  (" Precursor match works. ").
biodb.INFO [2025-04-19 16:07:23.344][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:23.345][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:23.353][super$initialize] Initialize connector mass.csv.file.2.
biodb.DEBUG[2025-04-19 16:07:23.355][biodb$getFactory()$createConn] Creating new connector mass.csv.file.2 for database class mass.csv.file .
biodb.DEBUG[2025-04-19 16:07:23.383][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2025-04-19 16:07:23.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:23.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:23.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:23.389][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.391][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2025-04-19 16:07:23.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:23.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:23.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:23.397][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.397][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:23.399][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.400][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:23.405][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.405][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:23.405][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:23.406][self$setField] Set field peak.comp to column(s) peak.comp.
biodb.TRACE[2025-04-19 16:07:23.407][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:23.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:23.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:23.412][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.412][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:23.412][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:23.412][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:23.414][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2025-04-19 16:07:23.415][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:23.420][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.420][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:23.420][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:23.420][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:23.420][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:23.421][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2025-04-19 16:07:23.423][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:23.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:23.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:23.427][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.427][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:23.427][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:23.427][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:23.427][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:23.427][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:23.429][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2025-04-19 16:07:23.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:23.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:23.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:23.435][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.435][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:23.435][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:23.435][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:23.435][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:23.435][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:23.435][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:23.437][self$setField] Set field name to column(s) name.
biodb.TRACE[2025-04-19 16:07:23.438][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:23.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:23.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:23.443][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.443][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:23.443][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:23.443][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:23.443][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:23.443][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:23.443][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:23.443][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:23.444][self$setField] Set field chrom.col.id to column(s) chrom.col.id.
biodb.TRACE[2025-04-19 16:07:23.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:23.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:23.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:23.450][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.450][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:23.450][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:23.450][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:23.450][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:23.450][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:23.450][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:23.450][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:23.450][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:23.452][self$setField] Set field chrom.rt to column(s) chrom.rt.
biodb.TRACE[2025-04-19 16:07:23.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:23.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:23.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:23.458][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.458][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:23.458][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:23.458][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:23.458][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:23.458][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:23.458][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:23.458][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:23.458][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:23.458][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:23.459][self$setField] Set field chrom.rt.unit to column(s) chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:23.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:23.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:23.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:23.466][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.466][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:23.466][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:23.466][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:23.466][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:23.466][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:23.466][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:23.466][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:23.466][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:23.466][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:23.466][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:23.468][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.468][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:23.468][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:23.468][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:23.468][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:23.468][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:23.468][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:23.468][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:23.468][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:23.468][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:23.468][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:23.470][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.470][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:23.470][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:23.470][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:23.470][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:23.470][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:23.470][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:23.470][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:23.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:23.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:23.470][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:23.471][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.471][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:23.471][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:23.471][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:23.471][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:23.471][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:23.471][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:23.471][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:23.471][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:23.471][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:23.471][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:23.473][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.473][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:23.473][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:23.473][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:23.473][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:23.473][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:23.473][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:23.473][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:23.473][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:23.473][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:23.473][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:23.474][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.474][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:23.474][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:23.474][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:23.474][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:23.474][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:23.474][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:23.474][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:23.474][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:23.474][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:23.474][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:23.475][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.475][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:23.475][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:23.475][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:23.475][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:23.475][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:23.475][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:23.475][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:23.475][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:23.475][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:23.475][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:23.477][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.477][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:23.477][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:23.477][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:23.477][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:23.477][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:23.477][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:23.477][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:23.477][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:23.477][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:23.477][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:23.478][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.478][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:23.478][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:23.478][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:23.478][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:23.478][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:23.478][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:23.478][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:23.478][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:23.478][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:23.478][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:23.480][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.480][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:23.480][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:23.480][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:23.480][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:23.480][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:23.480][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:23.480][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:23.480][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:23.480][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:23.480][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:23.481][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.481][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:23.481][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:23.481][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:23.481][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:23.481][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:23.481][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:23.481][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:23.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:23.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:23.481][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:23.483][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:23.483][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:23.483][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:23.483][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:23.483][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:23.483][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:23.483][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:23.483][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:23.483][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:23.483][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:23.483][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:23.484][self$setPropertyValue] Setting property "matching.fields" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:23.485][private$selectByRange] Filtering on field "peak.mztheo", with range: [53.9, 54.1], [111.9, 112.1], [107.9, 108.1].
biodb.DEBUG[2025-04-19 16:07:23.488][private$selectByRange] 6 values to filter on field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:23.492][self$searchForMassSpectra] Found 2 spectra: [2]: "A2, B3"
biodb.DEBUG[2025-04-19 16:07:23.493][self$searchForMassSpectra] Found 2 spectra: [2]: "A2, B3"
biodb.DEBUG[2025-04-19 16:07:23.494][private$matchingMzWithSpectra] M/Z values to process [3]: "54, 112, 108"
biodb.DEBUG[2025-04-19 16:07:23.513][private$selectByRange] Filtering on field "peak.mztheo", with range: [53.9, 54.1].
biodb.DEBUG[2025-04-19 16:07:23.515][private$selectByRange] 6 values to filter on field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:23.518][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "A2"
biodb.DEBUG[2025-04-19 16:07:23.520][private$loadEntries] Creating entries from ids [1]: "A2".
biodb.DEBUG[2025-04-19 16:07:23.521][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-19 16:07:23.523][conn$getEntryContent] 0 Mass spectra CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:23.524][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2025-04-19 16:07:23.525][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:23.526][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:23.527][private$doGetEntryContentFromDb] Entry id: A2
biodb.DEBUG[2025-04-19 16:07:23.532][private$doGetEntryContentFromDb] Content of first entry: accession	ms.mode	peak.mztheo	peak.comp	peak.attr	formula	molecular.mass	name	chrom.col.id	chrom.rt	chrom.rt.unit
A2	pos	112	P9Z6W410 O	[(M+H)]+	J114L6M62O2	146.10553	Blablaine	col1	5.69	min
A2	pos	69	P9Z6W410 O	[(M+H)-(NH3)]+	J114L6M62O2	146.10553	Blablaine	col1	5.69	min
A2	pos	54	P9Z6W410 O	[(M+H)-(H2O)]+	J114L6M62O2	146.10553	Blablaine	col1	5.69	min
biodb.DEBUG[2025-04-19 16:07:23.533][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:07:23.535][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:07:23.536][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2025-04-19 16:07:23.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:07:23.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:23.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:23.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:23.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:07:23.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:23.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:23.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:23.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:23.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:23.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:23.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:23.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:23.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.566][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.571][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.576][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:23.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:23.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.581][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:23.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:23.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.586][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.590][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:23.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:23.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.600][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:23.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:23.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:23.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:23.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:23.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:23.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:23.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:23.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:23.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:23.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:23.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:23.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:23.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:23.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:23.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:23.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:23.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:23.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:23.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:23.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:23.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:23.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.661][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.666][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.671][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.675][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.680][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:23.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:23.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.685][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.690][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.694][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.699][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.704][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.709][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.714][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2025-04-19 16:07:23.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2025-04-19 16:07:23.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.719][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2025-04-19 16:07:23.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2025-04-19 16:07:23.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.723][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2025-04-19 16:07:23.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2025-04-19 16:07:23.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.729][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.734][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.739][private$selectFields] Fields none
biodb.TRACE[2025-04-19 16:07:23.740][private$selectFields] Fields type: peak
biodb.TRACE[2025-04-19 16:07:23.741][private$selectFields] Fields is null: TRUE
biodb.TRACE[2025-04-19 16:07:23.742][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2025-04-19 16:07:23.744][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:23.745][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:23.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.747][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.749][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:23.750][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:23.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.752][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.753][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.755][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.757][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.758][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:23.759][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:23.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.763][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.764][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.768][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:23.769][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:23.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.772][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:23.774][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:23.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.777][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:23.778][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:23.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.781][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.782][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:23.783][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:23.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.786][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:23.788][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:23.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.791][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:23.792][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:23.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.796][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.797][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.801][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2025-04-19 16:07:23.802][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.803][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.807][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:23.808][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:23.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.811][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.813][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.815][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.816][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.817][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.821][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2025-04-19 16:07:23.822][private$organizeFieldsByGroups] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2025-04-19 16:07:23.823][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.825][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.828][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:23.829][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:23.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.832][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.833][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.834][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.838][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.839][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.841][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.842][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2025-04-19 16:07:23.844][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.849][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.853][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:23.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.858][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:23.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:23.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.864][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:23.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:23.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.869][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:23.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:23.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.874][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.878][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.883][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.888][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.893][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.898][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:23.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:23.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:23.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:23.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:23.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:23.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:23.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:23.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:23.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:23.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:23.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:23.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:23.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:23.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.940][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:23.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:23.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.945][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.950][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.955][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.959][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:23.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.964][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.969][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.974][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:23.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.979][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:23.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:23.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.984][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:23.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:23.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.989][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:23.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:23.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:23.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:23.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:23.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:23.999][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:24.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:24.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:24.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:24.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:24.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:24.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:24.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:24.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:24.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:24.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:24.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:24.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:24.038][self$createEntryFromContent] Accession numbers: A2.
biodb.DEBUG[2025-04-19 16:07:24.060][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:07:24.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:07:24.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:24.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:24.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:24.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:07:24.079][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.085][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.107][private$selectFields] Fields none
biodb.TRACE[2025-04-19 16:07:24.109][private$selectFields]
biodb.TRACE[2025-04-19 16:07:24.110][private$selectFields] Fields is null: TRUE
biodb.TRACE[2025-04-19 16:07:24.111][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:07:24.112][private$selectFields] Fields [15]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, chrom.col.id, chrom.rt, ..."
biodb.TRACE[2025-04-19 16:07:24.114][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:24.115][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:24.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.117][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.119][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.120][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.122][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.123][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:24.125][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:24.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.128][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:24.129][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:24.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.133][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:24.134][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:24.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.136][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.138][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:24.139][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:24.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.142][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:24.144][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:24.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.146][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.147][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:24.148][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:24.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.152][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:24.153][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:24.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.156][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.157][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:24.158][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:24.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.161][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:24.163][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:24.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.166][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.167][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.171][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:24.172][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:24.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.176][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:24.177][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:24.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.179][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.180][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.182][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.185][private$selectFields] Fields [15]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, chrom.col.id, chrom.rt, ..."
biodb.TRACE[2025-04-19 16:07:24.194][private$organizeFieldsByGroups] Fields [15]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, chrom.col.id, chrom.rt, ..."
biodb.TRACE[2025-04-19 16:07:24.196][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:24.197][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:24.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.200][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.202][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.204][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.205][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:24.206][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:24.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.210][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:24.211][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:24.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.213][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.214][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:24.216][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:24.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.218][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.219][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:24.220][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:24.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.224][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:24.225][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:24.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.229][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:24.230][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:24.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.232][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.233][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:24.235][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:24.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.238][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:24.239][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:24.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.243][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:24.244][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:24.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.247][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.249][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.252][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:24.253][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:24.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.257][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:24.258][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:24.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.261][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.263][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.265][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.266][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "formula", "molecular.mass", "name", "chrom.col.id", "chrom.rt", "chrom.rt.unit", "chrom.col.name", "msprecmz", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2025-04-19 16:07:24.268][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:24.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:24.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.272][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:24.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:24.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.277][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:24.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:24.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.282][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:24.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:24.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.287][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:24.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:24.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.292][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:24.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:24.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.297][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:24.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:24.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.302][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:24.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:24.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.306][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:24.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:24.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.311][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.316][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.321][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:24.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:24.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:24.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:24.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:24.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:24.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.361][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:24.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:24.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.366][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:24.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:24.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.371][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:24.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:24.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:24.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:24.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:24.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:24.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:24.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:24.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.390][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:24.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:24.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.395][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:24.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:24.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.400][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:24.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:24.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:24.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:24.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:24.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:24.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:24.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:24.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:24.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:24.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:24.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:24.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:24.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:24.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:24.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:24.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:24.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:24.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:24.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:24.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:24.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:24.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:24.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:24.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:24.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:24.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.463][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:24.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:24.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.468][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:24.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:24.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.473][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:24.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:24.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.478][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.483][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.488][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.500][private$entriesToListOfDataframes] Entry converted to data frame: [3, 15]: [accession, ms.mode, formula, molecular.mass, name, ...] [A2, pos, J114L6M62O2, 146.10553, Blablaine, ...] [A2, pos, J114L6M62O2, 146.10553, Blablaine, ...] [A2, pos, J114L6M62O2, 146.10553, Blablaine, ...].
biodb.DEBUG[2025-04-19 16:07:24.501][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:07:24.502][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:07:24.505][private$selectByRange] Filtering on field "peak.mztheo", with range: [111.9, 112.1].
biodb.DEBUG[2025-04-19 16:07:24.507][private$selectByRange] 6 values to filter on field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:24.510][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "A2"
biodb.DEBUG[2025-04-19 16:07:24.522][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:07:24.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:07:24.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:24.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:24.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:24.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:07:24.548][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.553][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.558][private$selectFields] Fields none
biodb.TRACE[2025-04-19 16:07:24.559][private$selectFields]
biodb.TRACE[2025-04-19 16:07:24.560][private$selectFields] Fields is null: TRUE
biodb.TRACE[2025-04-19 16:07:24.561][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:07:24.563][private$selectFields] Fields [15]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, chrom.col.id, chrom.rt, ..."
biodb.TRACE[2025-04-19 16:07:24.564][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:24.565][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:24.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.569][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.570][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.573][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:24.575][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:24.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.578][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:24.579][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:24.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.583][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:24.584][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:24.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.587][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:24.589][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:24.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.591][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.592][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:24.593][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:24.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.596][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.597][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:24.598][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:24.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.600][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.601][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:24.603][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:24.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.606][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:24.607][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:24.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.611][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:24.612][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:24.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.616][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.617][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.619][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.620][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:24.622][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:24.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.624][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.625][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:24.626][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:24.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.629][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.630][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.631][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.633][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.634][private$selectFields] Fields [15]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, chrom.col.id, chrom.rt, ..."
biodb.TRACE[2025-04-19 16:07:24.636][private$organizeFieldsByGroups] Fields [15]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, chrom.col.id, chrom.rt, ..."
biodb.TRACE[2025-04-19 16:07:24.637][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:24.638][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:24.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.642][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.643][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.645][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.646][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:24.648][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:24.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.650][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.651][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:24.652][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:24.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.654][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.656][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:24.657][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:24.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.659][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.660][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:24.662][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:24.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.664][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.665][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:24.666][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:24.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.669][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.670][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:24.671][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:24.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.675][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:24.676][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:24.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.679][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:24.681][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:24.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.684][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:24.685][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:24.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.687][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.689][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.690][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.692][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.693][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:24.695][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:24.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.697][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.698][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:24.699][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:24.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.703][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.704][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.712][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.714][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "formula", "molecular.mass", "name", "chrom.col.id", "chrom.rt", "chrom.rt.unit", "chrom.col.name", "msprecmz", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2025-04-19 16:07:24.715][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:24.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:24.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.720][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:24.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:24.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.725][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:24.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:24.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.730][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:24.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:24.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.734][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:24.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:24.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.739][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:24.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:24.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.744][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:24.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:24.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.749][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:24.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:24.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.754][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:24.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:24.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.759][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.764][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.768][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:24.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:24.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:24.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:24.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:24.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:24.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:24.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:24.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:24.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.808][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:24.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:24.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.813][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:24.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:24.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:24.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:24.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:24.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:24.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:24.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:24.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.832][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:24.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:24.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:24.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:24.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.842][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:24.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:24.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:24.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:24.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:24.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:24.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:24.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:24.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:24.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:24.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:24.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:24.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:24.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:24.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:24.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:24.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:24.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:24.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:24.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:24.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:24.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:24.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:24.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:24.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:24.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:24.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.907][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:24.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:24.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.911][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:24.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:24.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.916][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:24.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:24.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.921][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.926][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.931][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:24.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.941][private$entriesToListOfDataframes] Entry converted to data frame: [3, 15]: [accession, ms.mode, formula, molecular.mass, name, ...] [A2, pos, J114L6M62O2, 146.10553, Blablaine, ...] [A2, pos, J114L6M62O2, 146.10553, Blablaine, ...] [A2, pos, J114L6M62O2, 146.10553, Blablaine, ...].
biodb.DEBUG[2025-04-19 16:07:24.942][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:07:24.944][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:07:24.947][private$selectByRange] Filtering on field "peak.mztheo", with range: [107.9, 108.1].
biodb.DEBUG[2025-04-19 16:07:24.949][private$selectByRange] 6 values to filter on field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:24.952][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "B3"
biodb.DEBUG[2025-04-19 16:07:24.953][private$loadEntries] Creating entries from ids [1]: "B3".
biodb.DEBUG[2025-04-19 16:07:24.955][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-19 16:07:24.956][conn$getEntryContent] 0 Mass spectra CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:24.958][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2025-04-19 16:07:24.959][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:24.960][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:24.961][private$doGetEntryContentFromDb] Entry id: B3
biodb.DEBUG[2025-04-19 16:07:24.966][private$doGetEntryContentFromDb] Content of first entry: accession	ms.mode	peak.mztheo	peak.comp	peak.attr	formula	molecular.mass	name	chrom.col.id	chrom.rt	chrom.rt.unit
B3	pos	108	P9Z6W410 O	[(M+H)]+	J114L6M62O2	146.10553	Blablaine	col1	8.75	min
biodb.DEBUG[2025-04-19 16:07:24.967][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:07:24.969][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:07:24.970][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2025-04-19 16:07:24.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:07:24.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:24.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:24.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:24.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:07:24.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:24.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:24.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:24.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:24.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:24.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:24.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:24.999][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.004][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.009][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.014][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.019][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.024][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.029][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:25.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:25.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.034][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:25.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:25.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:25.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:25.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:25.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:25.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.048][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:25.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:25.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:25.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:25.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:25.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:25.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:25.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:25.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:25.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:25.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:25.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:25.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.094][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.099][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.104][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.109][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.114][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:25.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:25.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.118][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.123][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.128][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.133][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.138][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.143][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.148][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2025-04-19 16:07:25.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2025-04-19 16:07:25.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.152][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2025-04-19 16:07:25.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2025-04-19 16:07:25.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.157][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2025-04-19 16:07:25.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2025-04-19 16:07:25.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.163][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.168][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.172][private$selectFields] Fields none
biodb.TRACE[2025-04-19 16:07:25.173][private$selectFields] Fields type: peak
biodb.TRACE[2025-04-19 16:07:25.175][private$selectFields] Fields is null: TRUE
biodb.TRACE[2025-04-19 16:07:25.176][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2025-04-19 16:07:25.177][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:25.178][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:25.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.182][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:25.183][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:25.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.185][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.186][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.188][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.190][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.191][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.193][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.195][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.196][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.197][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.201][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:25.202][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:25.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.204][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.206][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:25.207][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:25.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.210][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:25.212][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:25.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.214][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.215][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.217][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.219][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.220][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:25.221][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:25.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.224][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.225][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:25.226][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:25.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.228][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.230][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.231][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.235][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2025-04-19 16:07:25.236][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.237][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.239][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.241][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.242][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.244][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.245][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.247][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.250][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.252][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.254][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.255][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2025-04-19 16:07:25.256][private$organizeFieldsByGroups] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2025-04-19 16:07:25.258][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.259][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.261][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.262][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.264][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.267][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.269][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.271][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.272][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.273][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.276][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.277][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2025-04-19 16:07:25.278][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.285][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.290][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.295][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.299][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.304][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.309][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.314][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.319][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.324][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.329][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.333][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:25.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:25.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:25.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:25.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:25.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:25.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.373][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:25.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:25.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.377][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.382][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.387][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.392][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.397][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.401][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.406][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.411][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:25.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:25.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.416][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:25.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:25.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.421][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:25.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:25.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:25.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:25.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.430][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:25.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:25.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:25.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:25.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:25.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:25.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:25.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:25.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:25.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:25.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:25.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:25.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:25.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:25.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:25.464][self$createEntryFromContent] Accession numbers: B3.
biodb.DEBUG[2025-04-19 16:07:25.479][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:07:25.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:07:25.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:25.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:25.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:25.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:07:25.487][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.492][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.497][private$selectFields] Fields none
biodb.TRACE[2025-04-19 16:07:25.498][private$selectFields]
biodb.TRACE[2025-04-19 16:07:25.499][private$selectFields] Fields is null: TRUE
biodb.TRACE[2025-04-19 16:07:25.500][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:07:25.501][private$selectFields] Fields [15]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, chrom.col.id, chrom.rt, ..."
biodb.TRACE[2025-04-19 16:07:25.503][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:25.504][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:25.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.506][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.507][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:25.508][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:25.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.512][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.513][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.515][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.517][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.518][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.520][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.521][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.523][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.526][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:25.528][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:25.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.531][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:25.532][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:25.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.535][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.536][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:25.537][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:25.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.539][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.540][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.542][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.544][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.545][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:25.546][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:25.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.549][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.550][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:25.551][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:25.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.553][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.554][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.556][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.558][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.559][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:25.560][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:25.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.564][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:25.565][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:25.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.568][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.569][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:25.570][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:25.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.574][private$selectFields] Fields [15]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, chrom.col.id, chrom.rt, ..."
biodb.TRACE[2025-04-19 16:07:25.575][private$organizeFieldsByGroups] Fields [15]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, chrom.col.id, chrom.rt, ..."
biodb.TRACE[2025-04-19 16:07:25.576][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:25.577][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:25.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.581][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:25.582][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:25.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.585][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.586][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.587][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.590][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.592][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.595][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.596][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.599][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.600][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:25.601][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:25.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.604][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.605][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:25.606][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:25.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.609][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:25.611][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:25.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.613][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.614][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.615][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.619][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:25.620][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:25.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.624][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:25.625][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:25.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.628][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.630][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.633][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:25.634][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:25.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.637][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.638][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:25.639][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:25.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.641][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.643][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:25.644][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:25.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.646][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.648][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "formula", "molecular.mass", "name", "chrom.col.id", "chrom.rt", "chrom.rt.unit", "chrom.col.name", "msprecmz", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2025-04-19 16:07:25.649][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.654][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.659][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:25.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.664][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.668][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.673][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:25.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.678][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.683][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.688][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:25.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.693][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.698][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.703][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:25.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:25.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:25.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:25.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:25.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:25.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:25.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:25.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:25.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:25.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:25.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:25.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:25.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:25.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:25.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.742][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:25.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:25.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.747][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:25.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:25.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:25.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:25.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:25.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:25.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:25.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:25.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:25.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:25.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:25.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:25.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:25.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:25.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:25.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:25.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:25.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:25.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:25.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:25.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:25.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:25.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:25.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:25.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:25.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:25.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:25.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:25.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:25.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:25.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:25.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:25.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.839][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:25.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:25.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.844][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:25.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:25.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.851][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:25.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:25.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.864][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:25.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:25.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.868][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:25.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:25.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.873][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:25.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:25.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.884][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, ms.mode, formula, molecular.mass, name, ...] [B3, pos, J114L6M62O2, 146.10553, Blablaine, ...].
biodb.DEBUG[2025-04-19 16:07:25.885][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:07:25.886][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:07:25.910][private$selectByRange] Filtering on field "peak.mztheo", with range: [53.9, 54.1].
biodb.DEBUG[2025-04-19 16:07:25.913][private$selectByRange] 6 values to filter on field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:25.916][self$searchForMassSpectra] Found 0 spectra: none
biodb.DEBUG[2025-04-19 16:07:25.918][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.DEBUG[2025-04-19 16:07:25.919][self$filterEntriesOnRt] 0 spectra remaining after chrom col filtering: .
biodb.DEBUG[2025-04-19 16:07:25.920][private$computeRtRange] At step 1, RT range is [341.4, 341.4] (s).
biodb.DEBUG[2025-04-19 16:07:25.921][private$computeRtRange] RT tol is 1 (s).
biodb.DEBUG[2025-04-19 16:07:25.922][private$computeRtRange] At step 2, RT range is [340.4, 342.4] (s).
biodb.DEBUG[2025-04-19 16:07:25.924][private$computeRtRange] At step 3, RT range is [340.4, 342.4] (s).
biodb.DEBUG[2025-04-19 16:07:25.925][self$filterEntriesOnRt] 0 spectra remaining after retention time filtering:.
biodb.DEBUG[2025-04-19 16:07:25.926][private$selectByRange] Filtering on field "peak.mztheo", with range: [111.9, 112.1].
biodb.DEBUG[2025-04-19 16:07:25.929][private$selectByRange] 6 values to filter on field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:25.933][self$searchForMassSpectra] Found 1 spectra: [1]: "A2"
biodb.DEBUG[2025-04-19 16:07:25.967][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.TRACE[2025-04-19 16:07:25.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:25.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:25.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:25.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:25.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:25.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:25.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:25.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:25.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:25.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:25.997][self$filterEntriesOnRt] 1 spectra remaining after chrom col filtering: A2.
biodb.TRACE[2025-04-19 16:07:25.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:26.016][private$computeRtRange] At step 1, RT range is [341.4, 341.4] (s).
biodb.DEBUG[2025-04-19 16:07:26.017][private$computeRtRange] RT tol is 1 (s).
biodb.DEBUG[2025-04-19 16:07:26.018][private$computeRtRange] At step 2, RT range is [340.4, 342.4] (s).
biodb.DEBUG[2025-04-19 16:07:26.020][private$computeRtRange] At step 3, RT range is [340.4, 342.4] (s).
biodb.TRACE[2025-04-19 16:07:26.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:26.068][self$filterEntriesOnRt] Testing if RT value 5.69 (min) is in range [341.4;341.4] (s) of database entry A2. Used range (after applying tolerances) for RT value is [340.4, 342.4] (s).
biodb.TRACE[2025-04-19 16:07:26.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:26.084][self$filterEntriesOnRt] 1 spectra remaining after retention time filtering:A2.
biodb.DEBUG[2025-04-19 16:07:26.086][private$selectByRange] Filtering on field "peak.mztheo", with range: [107.9, 108.1].
biodb.DEBUG[2025-04-19 16:07:26.088][private$selectByRange] 6 values to filter on field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:26.092][self$searchForMassSpectra] Found 1 spectra: [1]: "B3"
biodb.DEBUG[2025-04-19 16:07:26.093][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.TRACE[2025-04-19 16:07:26.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:26.123][self$filterEntriesOnRt] 1 spectra remaining after chrom col filtering: B3.
biodb.TRACE[2025-04-19 16:07:26.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:26.134][private$computeRtRange] At step 1, RT range is [585, 585] (s).
biodb.DEBUG[2025-04-19 16:07:26.135][private$computeRtRange] RT tol is 1 (s).
biodb.DEBUG[2025-04-19 16:07:26.136][private$computeRtRange] At step 2, RT range is [584, 586] (s).
biodb.DEBUG[2025-04-19 16:07:26.137][private$computeRtRange] At step 3, RT range is [584, 586] (s).
biodb.TRACE[2025-04-19 16:07:26.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:26.187][self$filterEntriesOnRt] Testing if RT value 9.750001 (min) is in range [525;525] (s) of database entry B3. Used range (after applying tolerances) for RT value is [584.00006, 586.00006] (s).
biodb.DEBUG[2025-04-19 16:07:26.188][self$filterEntriesOnRt] 0 spectra remaining after retention time filtering:.
biodb.DEBUG[2025-04-19 16:07:26.189][self$searchForMassSpectra] Found 1 spectra: [1]: "A2"
biodb.DEBUG[2025-04-19 16:07:26.214][private$matchingMzWithSpectra] M/Z values to process [3]: "54, 112, 108"
biodb.DEBUG[2025-04-19 16:07:26.216][private$selectByRange] Filtering on field "peak.mztheo", with range: [53.9, 54.1].
biodb.DEBUG[2025-04-19 16:07:26.219][private$selectByRange] 6 values to filter on field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:26.222][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.DEBUG[2025-04-19 16:07:26.223][private$loadEntries] Creating entries from ids [1]: "C1".
biodb.DEBUG[2025-04-19 16:07:26.224][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-19 16:07:26.226][conn$getEntryContent] 0 Mass spectra CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:26.227][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2025-04-19 16:07:26.228][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:26.229][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:26.230][private$doGetEntryContentFromDb] Entry id: C1
biodb.DEBUG[2025-04-19 16:07:26.235][private$doGetEntryContentFromDb] Content of first entry: accession	ms.mode	peak.mztheo	peak.comp	peak.attr	formula	molecular.mass	name	chrom.col.id	chrom.rt	chrom.rt.unit
C1	pos	112	P9Z6W410 O	[(M+H)-(H2O)-(NH3)]+	J114L6M62O2	146.10553	Blablaine	col1	5.69	min
C1	pos	54	P9Z6W410 O	[(M+H)-(NH3)]+	J114L6M62O2	146.10553	Blablaine	col1	5.69	min
biodb.DEBUG[2025-04-19 16:07:26.236][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:07:26.238][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:07:26.239][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2025-04-19 16:07:26.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:07:26.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:26.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:26.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:26.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:07:26.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.259][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:26.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:26.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:26.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:26.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.269][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.273][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.278][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:26.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:26.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.283][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:26.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:26.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.288][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.293][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.298][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:26.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:26.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.303][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:26.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:26.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:26.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:26.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:26.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:26.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.318][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:26.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:26.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:26.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:26.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.357][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.361][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.366][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.371][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.376][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:26.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:26.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.381][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.386][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.391][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.395][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.400][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.405][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.410][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2025-04-19 16:07:26.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2025-04-19 16:07:26.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.414][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2025-04-19 16:07:26.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2025-04-19 16:07:26.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2025-04-19 16:07:26.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2025-04-19 16:07:26.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.425][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.430][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.435][private$selectFields] Fields none
biodb.TRACE[2025-04-19 16:07:26.436][private$selectFields] Fields type: peak
biodb.TRACE[2025-04-19 16:07:26.437][private$selectFields] Fields is null: TRUE
biodb.TRACE[2025-04-19 16:07:26.438][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2025-04-19 16:07:26.439][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.440][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.443][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.444][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:26.445][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:26.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.448][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.450][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.452][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.453][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:26.454][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:26.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.457][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.458][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.459][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.461][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.463][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:26.464][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:26.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.466][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.467][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:26.469][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:26.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.472][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:26.473][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:26.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.475][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.477][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.478][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.481][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.483][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.485][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.486][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.487][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.491][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.492][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.494][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.495][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2025-04-19 16:07:26.497][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.498][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.501][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:26.503][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:26.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.505][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.506][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.507][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.509][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.511][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.512][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.515][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2025-04-19 16:07:26.516][private$organizeFieldsByGroups] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2025-04-19 16:07:26.518][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.519][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.522][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:26.524][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:26.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.527][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.528][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.532][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.533][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.535][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.536][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2025-04-19 16:07:26.538][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.543][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.547][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:26.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.552][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:26.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:26.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.564][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:26.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:26.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.568][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:26.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:26.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.573][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.578][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.583][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.588][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.592][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.597][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:26.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:26.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:26.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:26.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:26.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:26.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.636][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:26.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:26.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.641][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.647][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.652][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.657][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:26.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.662][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.667][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.672][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:26.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.676][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:26.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:26.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.681][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:26.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:26.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.691][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:26.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:26.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:26.725][self$createEntryFromContent] Accession numbers: C1.
biodb.TRACE[2025-04-19 16:07:26.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:26.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:26.783][self$filterEntriesOnRt] 2 spectra remaining after chrom col filtering: A2, C1.
biodb.TRACE[2025-04-19 16:07:26.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:26.803][private$computeRtRange] At step 1, RT range is [341.4, 341.4] (s).
biodb.DEBUG[2025-04-19 16:07:26.805][private$computeRtRange] RT tol is 5 (s).
biodb.DEBUG[2025-04-19 16:07:26.806][private$computeRtRange] At step 2, RT range is [336.4, 346.4] (s).
biodb.DEBUG[2025-04-19 16:07:26.807][private$computeRtRange] RT tol exp is 0.8.
biodb.DEBUG[2025-04-19 16:07:26.808][private$computeRtRange] At step 3, RT range is [230.081, 452.719] (s).
biodb.TRACE[2025-04-19 16:07:26.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:26.857][self$filterEntriesOnRt] Testing if RT value 5.69 (min) is in range [341.4;341.4] (s) of database entry A2. Used range (after applying tolerances) for RT value is [230.081017064665, 452.718982935335] (s).
biodb.TRACE[2025-04-19 16:07:26.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:26.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:26.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:26.921][self$filterEntriesOnRt] Testing if RT value 5.69 (min) is in range [341.4;341.4] (s) of database entry C1. Used range (after applying tolerances) for RT value is [230.081017064665, 452.718982935335] (s).
biodb.TRACE[2025-04-19 16:07:26.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:26.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:26.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:26.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:26.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:26.936][self$filterEntriesOnRt] 2 spectra remaining after retention time filtering:A2, C1.
biodb.DEBUG[2025-04-19 16:07:26.937][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "A2"
biodb.DEBUG[2025-04-19 16:07:26.939][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:07:27.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:07:27.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:27.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:27.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:27.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:07:27.138][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.143][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.148][private$selectFields] Fields none
biodb.TRACE[2025-04-19 16:07:27.149][private$selectFields]
biodb.TRACE[2025-04-19 16:07:27.150][private$selectFields] Fields is null: TRUE
biodb.TRACE[2025-04-19 16:07:27.151][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:07:27.152][private$selectFields] Fields [15]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, chrom.col.id, chrom.rt, ..."
biodb.TRACE[2025-04-19 16:07:27.153][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.154][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.158][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:27.159][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:27.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.162][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:27.164][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:27.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.167][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:27.168][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:27.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.171][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:27.173][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:27.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.175][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.176][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:27.177][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:27.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.179][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.181][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:27.182][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:27.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.185][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:27.186][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:27.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.189][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.190][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.191][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.193][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.194][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.195][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.198][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.199][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.200][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.202][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.203][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.205][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.208][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:27.209][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:27.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.211][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.212][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:27.214][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:27.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.217][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:27.218][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:27.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.222][private$selectFields] Fields [15]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, chrom.col.id, chrom.rt, ..."
biodb.TRACE[2025-04-19 16:07:27.223][private$organizeFieldsByGroups] Fields [15]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, chrom.col.id, chrom.rt, ..."
biodb.TRACE[2025-04-19 16:07:27.224][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.225][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.228][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:27.230][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:27.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.232][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.233][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:27.234][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:27.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.238][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:27.239][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:27.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.242][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:27.243][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:27.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.247][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:27.248][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:27.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.250][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.251][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:27.252][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:27.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.255][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.256][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:27.257][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:27.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.259][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.260][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.262][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.264][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.265][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.266][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.268][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.269][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.271][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.274][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.275][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.277][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.278][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:27.280][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:27.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.282][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.283][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:27.284][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:27.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.287][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.288][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:27.289][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:27.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.292][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "formula", "molecular.mass", "name", "chrom.col.id", "chrom.rt", "chrom.rt.unit", "chrom.col.name", "msprecmz", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2025-04-19 16:07:27.294][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:27.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:27.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.298][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:27.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:27.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.303][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:27.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:27.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.308][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:27.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:27.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.313][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:27.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:27.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.317][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:27.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:27.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.322][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:27.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:27.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.327][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:27.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:27.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.331][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:27.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:27.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.336][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.341][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.346][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:27.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:27.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:27.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:27.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:27.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:27.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.379][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:27.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:27.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:27.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:27.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:27.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:27.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:27.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:27.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:27.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:27.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:27.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:27.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.407][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:27.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:27.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:27.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:27.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.416][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:27.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:27.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:27.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:27.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:27.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:27.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:27.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:27.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.478][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:27.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:27.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.483][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:27.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:27.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.488][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:27.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:27.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.493][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:27.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:27.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.497][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:27.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:27.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.502][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:27.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:27.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.518][private$entriesToListOfDataframes] Entry converted to data frame: [3, 15]: [accession, ms.mode, formula, molecular.mass, name, ...] [A2, pos, J114L6M62O2, 146.10553, Blablaine, ...] [A2, pos, J114L6M62O2, 146.10553, Blablaine, ...] [A2, pos, J114L6M62O2, 146.10553, Blablaine, ...].
biodb.DEBUG[2025-04-19 16:07:27.519][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:07:27.520][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:07:27.523][private$selectByRange] Filtering on field "peak.mztheo", with range: [111.9, 112.1].
biodb.DEBUG[2025-04-19 16:07:27.525][private$selectByRange] 6 values to filter on field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:27.528][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.TRACE[2025-04-19 16:07:27.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:27.586][self$filterEntriesOnRt] 2 spectra remaining after chrom col filtering: A2, C1.
biodb.TRACE[2025-04-19 16:07:27.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:27.606][private$computeRtRange] At step 1, RT range is [341.4, 341.4] (s).
biodb.DEBUG[2025-04-19 16:07:27.607][private$computeRtRange] RT tol is 5 (s).
biodb.DEBUG[2025-04-19 16:07:27.608][private$computeRtRange] At step 2, RT range is [336.4, 346.4] (s).
biodb.DEBUG[2025-04-19 16:07:27.609][private$computeRtRange] RT tol exp is 0.8.
biodb.DEBUG[2025-04-19 16:07:27.610][private$computeRtRange] At step 3, RT range is [230.081, 452.719] (s).
biodb.TRACE[2025-04-19 16:07:27.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:27.657][self$filterEntriesOnRt] Testing if RT value 5.69 (min) is in range [341.4;341.4] (s) of database entry A2. Used range (after applying tolerances) for RT value is [230.081017064665, 452.718982935335] (s).
biodb.TRACE[2025-04-19 16:07:27.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:27.719][self$filterEntriesOnRt] Testing if RT value 5.69 (min) is in range [341.4;341.4] (s) of database entry C1. Used range (after applying tolerances) for RT value is [230.081017064665, 452.718982935335] (s).
biodb.TRACE[2025-04-19 16:07:27.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:27.734][self$filterEntriesOnRt] 2 spectra remaining after retention time filtering:A2, C1.
biodb.DEBUG[2025-04-19 16:07:27.736][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "A2"
biodb.DEBUG[2025-04-19 16:07:27.737][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:07:27.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:07:27.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:27.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:27.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:27.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:07:27.745][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.750][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.755][private$selectFields] Fields none
biodb.TRACE[2025-04-19 16:07:27.756][private$selectFields]
biodb.TRACE[2025-04-19 16:07:27.757][private$selectFields] Fields is null: TRUE
biodb.TRACE[2025-04-19 16:07:27.758][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:07:27.759][private$selectFields] Fields [15]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, chrom.col.id, chrom.rt, ..."
biodb.TRACE[2025-04-19 16:07:27.760][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.764][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.765][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:27.766][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:27.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.769][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:27.771][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:27.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.774][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:27.775][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:27.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.779][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:27.780][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:27.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.782][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.783][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:27.784][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:27.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.787][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.788][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:27.789][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:27.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.792][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:27.794][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:27.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.797][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.798][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.802][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.803][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.806][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.808][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.811][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.812][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.816][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:27.817][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:27.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.819][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.820][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:27.821][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:27.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.824][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.825][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:27.826][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:27.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.830][private$selectFields] Fields [15]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, chrom.col.id, chrom.rt, ..."
biodb.TRACE[2025-04-19 16:07:27.831][private$organizeFieldsByGroups] Fields [15]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, formula, molecular.mass, name, chrom.col.id, chrom.rt, ..."
biodb.TRACE[2025-04-19 16:07:27.832][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.833][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.837][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:27.838][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:27.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.841][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:27.843][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:27.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.845][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.846][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:27.848][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:27.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.852][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:27.853][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:27.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.857][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:27.858][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:27.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.860][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.861][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:27.863][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:27.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.866][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:27.867][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:27.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.870][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.871][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.872][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:27.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.874][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.876][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.877][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:27.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.879][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.880][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.881][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:27.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.884][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.885][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.886][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.888][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.890][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:27.891][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:27.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.899][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:27.901][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:27.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.903][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.904][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:27.905][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:27.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.909][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "formula", "molecular.mass", "name", "chrom.col.id", "chrom.rt", "chrom.rt.unit", "chrom.col.name", "msprecmz", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2025-04-19 16:07:27.910][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:27.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:27.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.915][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:27.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:27.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.919][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:27.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:27.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.924][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:27.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:27.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.929][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:27.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:27.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.933][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:27.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:27.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.938][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:27.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:27.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.943][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:27.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:27.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.948][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:27.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:27.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.952][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.957][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.962][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:27.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:27.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:27.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:27.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:27.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:27.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:27.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:27.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:27.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.995][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:27.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:27.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:27.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:27.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:28.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:28.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:28.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:28.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:28.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:28.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:28.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:28.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:28.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:28.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:28.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:28.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:28.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:28.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:28.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:28.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:28.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:28.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:28.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:28.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:28.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:28.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.093][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:28.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:28.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.098][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:28.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:28.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.102][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:28.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:28.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.107][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:28.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:28.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.112][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:28.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:28.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.116][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:28.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:28.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.126][private$entriesToListOfDataframes] Entry converted to data frame: [3, 15]: [accession, ms.mode, formula, molecular.mass, name, ...] [A2, pos, J114L6M62O2, 146.10553, Blablaine, ...] [A2, pos, J114L6M62O2, 146.10553, Blablaine, ...] [A2, pos, J114L6M62O2, 146.10553, Blablaine, ...].
biodb.DEBUG[2025-04-19 16:07:28.128][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:07:28.129][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:07:28.132][private$selectByRange] Filtering on field "peak.mztheo", with range: [107.9, 108.1].
biodb.DEBUG[2025-04-19 16:07:28.134][private$selectByRange] 6 values to filter on field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:28.137][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.TRACE[2025-04-19 16:07:28.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:28.166][self$filterEntriesOnRt] 1 spectra remaining after chrom col filtering: B3.
biodb.TRACE[2025-04-19 16:07:28.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:28.177][private$computeRtRange] At step 1, RT range is [585, 585] (s).
biodb.DEBUG[2025-04-19 16:07:28.178][private$computeRtRange] RT tol is 5 (s).
biodb.DEBUG[2025-04-19 16:07:28.179][private$computeRtRange] At step 2, RT range is [580, 590] (s).
biodb.DEBUG[2025-04-19 16:07:28.180][private$computeRtRange] RT tol exp is 0.8.
biodb.DEBUG[2025-04-19 16:07:28.181][private$computeRtRange] At step 3, RT range is [416.422, 753.578] (s).
biodb.TRACE[2025-04-19 16:07:28.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:28.230][self$filterEntriesOnRt] Testing if RT value 9.750001 (min) is in range [525;525] (s) of database entry B3. Used range (after applying tolerances) for RT value is [416.422122316953, 753.577997683047] (s).
biodb.TRACE[2025-04-19 16:07:28.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:28.245][self$filterEntriesOnRt] 1 spectra remaining after retention time filtering:B3.
biodb.DEBUG[2025-04-19 16:07:28.246][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 0 spectra: none
biodb.INFO [2025-04-19 16:07:28.259][biodb::testThat]
biodb.INFO [2025-04-19 16:07:28.260][biodb::testThat] Running test function  test.mass.csv.file.rt.matching.limits  (" RT matching limits (rt.min and rt.max) are respected. ").
biodb.INFO [2025-04-19 16:07:28.261][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:28.262][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:28.267][super$initialize] Initialize connector mass.csv.file.3.
biodb.DEBUG[2025-04-19 16:07:28.269][biodb$getFactory()$createConn] Creating new connector mass.csv.file.3 for database class mass.csv.file .
biodb.TRACE[2025-04-19 16:07:28.272][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:28.273][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:28.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.282][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:28.283][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:28.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.285][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:28.287][private$matchingMzWithSpectra] M/Z values to process [1]: "112.07569"
biodb.TRACE[2025-04-19 16:07:28.289][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:28.290][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:28.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.293][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:28.295][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:28.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.297][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:28.299][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2025-04-19 16:07:28.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:28.305][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.306][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2025-04-19 16:07:28.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:28.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:28.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:28.313][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.313][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:28.314][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.315][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:28.320][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.320][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:28.320][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:28.321][self$setField] Set field peak.comp to column(s) peak.comp.
biodb.TRACE[2025-04-19 16:07:28.323][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:28.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:28.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:28.327][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.327][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:28.327][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:28.327][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:28.329][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2025-04-19 16:07:28.330][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:28.335][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.335][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:28.335][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:28.335][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:28.335][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:28.336][self$setField] Set field chrom.col.id to column(s) chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:28.342][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.342][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:28.342][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:28.342][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:28.342][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:28.342][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:28.344][self$setField] Set field chrom.rt to column(s) chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:28.350][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.350][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:28.350][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:28.350][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:28.350][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:28.350][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:28.350][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:28.351][self$setField] Set field chrom.rt.unit to column(s) chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:28.358][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.358][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:28.358][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:28.358][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:28.358][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:28.358][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:28.358][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:28.358][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:28.359][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2025-04-19 16:07:28.360][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:28.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:28.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:28.365][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.365][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:28.365][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:28.365][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:28.365][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:28.365][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:28.365][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:28.365][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:28.365][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:28.367][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2025-04-19 16:07:28.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:28.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:28.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:28.373][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.373][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:28.373][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:28.373][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:28.373][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:28.373][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:28.373][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:28.373][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:28.373][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:28.373][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:28.374][self$setField] Set field name to column(s) name.
biodb.TRACE[2025-04-19 16:07:28.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:28.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:28.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:28.380][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.380][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:28.380][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:28.380][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:28.380][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:28.380][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:28.380][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:28.380][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:28.380][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:28.380][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:28.380][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.TRACE[2025-04-19 16:07:28.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:28.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:28.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:28.389][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.389][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:28.389][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:28.389][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:28.389][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:28.389][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:28.389][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:28.389][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:28.389][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:28.389][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:28.389][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:28.390][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.390][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:28.390][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:28.390][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:28.390][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:28.390][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:28.390][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:28.390][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:28.390][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:28.390][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:28.390][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:28.391][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.391][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:28.391][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:28.391][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:28.391][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:28.391][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:28.391][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:28.391][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:28.391][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:28.391][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:28.391][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:28.393][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.393][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:28.393][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:28.393][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:28.393][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:28.393][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:28.393][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:28.393][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:28.393][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:28.393][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:28.393][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:28.394][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.394][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:28.394][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:28.394][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:28.394][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:28.394][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:28.394][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:28.394][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:28.394][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:28.394][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:28.394][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:28.395][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.395][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:28.395][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:28.395][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:28.395][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:28.395][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:28.395][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:28.395][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:28.395][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:28.395][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:28.395][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:28.397][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.397][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:28.397][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:28.397][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:28.397][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:28.397][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:28.397][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:28.397][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:28.397][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:28.397][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:28.397][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:28.398][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.398][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:28.398][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:28.398][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:28.398][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:28.398][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:28.398][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:28.398][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:28.398][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:28.398][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:28.398][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:28.400][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.400][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:28.400][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:28.400][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:28.400][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:28.400][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:28.400][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:28.400][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:28.400][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:28.400][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:28.400][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:28.401][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.401][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:28.401][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:28.401][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:28.401][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:28.401][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:28.401][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:28.401][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:28.401][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:28.401][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:28.401][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:28.402][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:28.402][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:28.402][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:28.402][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2025-04-19 16:07:28.402][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2025-04-19 16:07:28.402][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:28.402][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:28.402][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:28.402][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:28.402][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:28.402][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:28.404][self$setPropertyValue] Setting property "matching.fields" to "peak.mztheo".
biodb.DEBUG[2025-04-19 16:07:28.405][private$selectByRange] Filtering on field "peak.mztheo", with range: [112.07512962155, 112.07625037845].
biodb.DEBUG[2025-04-19 16:07:28.407][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:28.410][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.DEBUG[2025-04-19 16:07:28.411][private$loadEntries] Creating entries from ids [1]: "C1".
biodb.DEBUG[2025-04-19 16:07:28.413][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-19 16:07:28.414][conn$getEntryContent] 0 Mass spectra CSV File entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:28.415][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2025-04-19 16:07:28.417][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:28.418][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:07:28.419][private$doGetEntryContentFromDb] Entry id: C1
biodb.DEBUG[2025-04-19 16:07:28.423][private$doGetEntryContentFromDb] Content of first entry: accession	ms.mode	peak.mztheo	peak.comp	peak.attr	chrom.col.id	chrom.rt	chrom.rt.unit	formula	molecular.mass	name
C1	pos	112.07569	P9Z6W410 O	[(M+H)-(H2O)-(NH3)]+	col1	5.69	min	J114L6M62O2	146.10553	Blablaine
biodb.DEBUG[2025-04-19 16:07:28.424][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:07:28.426][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:07:28.427][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2025-04-19 16:07:28.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:07:28.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:28.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:28.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:28.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:07:28.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.446][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:28.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:28.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:28.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:28.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.456][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.461][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.466][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:28.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:28.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.471][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:28.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:28.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.476][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.481][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.515][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:28.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:28.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.519][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:28.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:28.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:28.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:28.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:28.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:28.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.534][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:28.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:28.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.539][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:28.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:28.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.544][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.548][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.553][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.558][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.563][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:28.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:28.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.567][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.572][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.577][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.582][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.586][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.591][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.596][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2025-04-19 16:07:28.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2025-04-19 16:07:28.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.601][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2025-04-19 16:07:28.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2025-04-19 16:07:28.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.606][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2025-04-19 16:07:28.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2025-04-19 16:07:28.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.611][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.616][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.621][private$selectFields] Fields none
biodb.TRACE[2025-04-19 16:07:28.622][private$selectFields] Fields type: peak
biodb.TRACE[2025-04-19 16:07:28.623][private$selectFields] Fields is null: TRUE
biodb.TRACE[2025-04-19 16:07:28.624][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2025-04-19 16:07:28.626][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.627][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.632][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:28.634][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:28.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.637][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.638][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.641][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.642][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:28.643][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:28.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.645][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.646][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.648][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.650][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.651][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.652][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.656][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.657][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.659][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.661][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.662][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.664][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.665][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:28.667][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:28.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.674][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.675][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:28.676][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:28.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.680][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:28.681][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:28.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.684][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.685][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.688][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.689][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2025-04-19 16:07:28.690][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.691][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.694][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.695][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:28.696][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:28.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.698][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.699][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.701][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.703][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.704][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.705][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.709][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2025-04-19 16:07:28.710][private$organizeFieldsByGroups] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2025-04-19 16:07:28.711][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.712][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.714][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.716][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:28.717][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:28.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.720][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.721][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.725][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.726][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.728][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.729][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2025-04-19 16:07:28.731][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.735][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.740][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:28.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.745][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:28.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:28.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.750][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:28.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:28.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.755][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:28.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:28.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.760][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.764][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.769][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.774][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.779][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.783][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:28.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:28.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:28.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:28.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:28.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:28.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.822][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:28.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:28.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.826][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.831][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.836][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.840][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:28.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.845][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.850][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.855][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:28.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.860][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:28.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:28.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.865][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:28.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:28.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.874][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:28.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:28.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:28.907][self$createEntryFromContent] Accession numbers: C1.
biodb.TRACE[2025-04-19 16:07:28.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:28.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:28.937][self$filterEntriesOnRt] 1 spectra remaining after chrom col filtering: C1.
biodb.TRACE[2025-04-19 16:07:28.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:28.947][private$computeRtRange] At step 1, RT range is [341.4, 341.4] (s).
biodb.DEBUG[2025-04-19 16:07:28.948][private$computeRtRange] RT tol is 5 (s).
biodb.DEBUG[2025-04-19 16:07:28.949][private$computeRtRange] At step 2, RT range is [336.4, 346.4] (s).
biodb.DEBUG[2025-04-19 16:07:28.950][private$computeRtRange] RT tol exp is 0.8.
biodb.DEBUG[2025-04-19 16:07:28.952][private$computeRtRange] At step 3, RT range is [230.081, 452.719] (s).
biodb.TRACE[2025-04-19 16:07:28.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:28.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:28.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:28.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:28.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:28.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:28.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:29.000][self$filterEntriesOnRt] Testing if RT value 341.4 (s) is in range [341.4;341.4] (s) of database entry C1. Used range (after applying tolerances) for RT value is [230.081017064665, 452.718982935335] (s).
biodb.TRACE[2025-04-19 16:07:29.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:29.016][self$filterEntriesOnRt] 1 spectra remaining after retention time filtering:C1.
biodb.DEBUG[2025-04-19 16:07:29.017][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "C1"
biodb.DEBUG[2025-04-19 16:07:29.018][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:07:29.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:07:29.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:29.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:29.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:29.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:07:29.026][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.031][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.036][private$selectFields] Fields none
biodb.TRACE[2025-04-19 16:07:29.037][private$selectFields]
biodb.TRACE[2025-04-19 16:07:29.038][private$selectFields] Fields is null: TRUE
biodb.TRACE[2025-04-19 16:07:29.039][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:07:29.040][private$selectFields] Fields [14]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, chrom.col.id, chrom.rt, chrom.rt.unit, formula, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:07:29.042][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.043][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.046][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.048][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.051][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:29.052][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:29.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.055][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.060][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:29.062][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:29.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.064][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.065][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:29.066][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:29.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.069][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.070][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.071][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.074][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.076][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.078][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.079][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.080][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.082][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.084][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:29.085][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:29.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.088][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:29.089][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:29.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.092][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.093][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:29.094][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:29.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.097][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.099][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.102][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:29.103][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:29.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.107][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:29.108][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:29.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.111][private$selectFields] Fields [14]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, chrom.col.id, chrom.rt, chrom.rt.unit, formula, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:07:29.112][private$organizeFieldsByGroups] Fields [14]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, chrom.col.id, chrom.rt, chrom.rt.unit, formula, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:07:29.114][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.115][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.117][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.118][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.119][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.122][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.123][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:29.124][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:29.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.127][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:29.129][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:29.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.132][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:29.133][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:29.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.136][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.137][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.138][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.141][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.142][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.146][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.147][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.149][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.150][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:29.152][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:29.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.155][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:29.156][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:29.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.158][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.160][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:29.161][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:29.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.164][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.165][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.168][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.169][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:29.170][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:29.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.173][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:29.175][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:29.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.177][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.178][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "chrom.col.id", "chrom.rt", "chrom.rt.unit", "formula", "molecular.mass", "name", "chrom.col.name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2025-04-19 16:07:29.179][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:29.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:29.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.184][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:29.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:29.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.189][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:29.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:29.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.194][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:29.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:29.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.198][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:29.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:29.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.203][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:29.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:29.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.208][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:29.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:29.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.213][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:29.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:29.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.217][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:29.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:29.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.222][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.227][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.231][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.308][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:29.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:29.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:29.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:29.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:29.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:29.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:29.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:29.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:29.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:29.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:29.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:29.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.336][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:29.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:29.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:29.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:29.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.346][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:29.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:29.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:29.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:29.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:29.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:29.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:29.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:29.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.365][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:29.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:29.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.369][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:29.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:29.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.374][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:29.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:29.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.384][private$entriesToListOfDataframes] Entry converted to data frame: [1, 14]: [accession, ms.mode, chrom.col.id, chrom.rt, chrom.rt.unit, ...] [C1, pos, col1, 5.69, min, ...].
biodb.DEBUG[2025-04-19 16:07:29.385][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:07:29.386][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:07:29.390][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.391][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.395][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.396][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.398][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:29.400][private$matchingMzWithSpectra] M/Z values to process [1]: "112.07569"
biodb.TRACE[2025-04-19 16:07:29.401][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.403][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.406][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.407][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:29.417][private$selectByRange] Filtering on field "peak.mztheo", with range: [112.07512962155, 112.07625037845].
biodb.DEBUG[2025-04-19 16:07:29.419][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:29.422][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.TRACE[2025-04-19 16:07:29.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:29.456][self$filterEntriesOnRt] 1 spectra remaining after chrom col filtering: C1.
biodb.TRACE[2025-04-19 16:07:29.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:29.467][private$computeRtRange] At step 1, RT range is [370.329, 370.329] (s).
biodb.DEBUG[2025-04-19 16:07:29.468][private$computeRtRange] RT tol is 5 (s).
biodb.DEBUG[2025-04-19 16:07:29.469][private$computeRtRange] At step 2, RT range is [365.329, 375.329] (s).
biodb.DEBUG[2025-04-19 16:07:29.470][private$computeRtRange] RT tol exp is 0.8.
biodb.DEBUG[2025-04-19 16:07:29.471][private$computeRtRange] At step 3, RT range is [251.862, 488.797] (s).
biodb.TRACE[2025-04-19 16:07:29.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:29.519][self$filterEntriesOnRt] Testing if RT value 370.329362926664 (s) is in range [341.4;341.4] (s) of database entry C1. Used range (after applying tolerances) for RT value is [251.862115789821, 488.796610063508] (s).
biodb.TRACE[2025-04-19 16:07:29.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:29.534][self$filterEntriesOnRt] 1 spectra remaining after retention time filtering:C1.
biodb.DEBUG[2025-04-19 16:07:29.535][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "C1"
biodb.DEBUG[2025-04-19 16:07:29.547][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:07:29.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:07:29.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:29.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:29.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:29.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:07:29.555][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.560][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.564][private$selectFields] Fields none
biodb.TRACE[2025-04-19 16:07:29.565][private$selectFields]
biodb.TRACE[2025-04-19 16:07:29.566][private$selectFields] Fields is null: TRUE
biodb.TRACE[2025-04-19 16:07:29.568][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:07:29.569][private$selectFields] Fields [14]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, chrom.col.id, chrom.rt, chrom.rt.unit, formula, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:07:29.570][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.571][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.573][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.574][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.576][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.578][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.579][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:29.580][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:29.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.584][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:29.585][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:29.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.587][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.588][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:29.589][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:29.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.591][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.593][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.594][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.596][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.597][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.598][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.601][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.602][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.603][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.606][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:29.608][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:29.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.611][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:29.612][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:29.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.615][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:29.617][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:29.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.619][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.620][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.621][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.623][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.625][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:29.626][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:29.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.628][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.629][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:29.630][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:29.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.633][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.634][private$selectFields] Fields [14]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, chrom.col.id, chrom.rt, chrom.rt.unit, formula, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:07:29.635][private$organizeFieldsByGroups] Fields [14]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, chrom.col.id, chrom.rt, chrom.rt.unit, formula, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:07:29.636][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.637][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.641][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.642][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.645][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:29.646][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:29.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.650][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:29.651][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:29.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.653][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.654][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:29.656][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:29.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.658][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.659][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.660][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.664][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.665][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.667][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.668][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.669][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.673][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:29.674][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:29.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.676][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.677][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:29.679][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:29.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.682][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:29.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:29.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.685][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.687][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.688][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.691][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:29.692][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:29.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.695][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.696][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:29.697][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:29.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.701][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "chrom.col.id", "chrom.rt", "chrom.rt.unit", "formula", "molecular.mass", "name", "chrom.col.name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2025-04-19 16:07:29.702][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:29.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:29.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.707][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:29.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:29.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.711][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:29.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:29.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.716][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:29.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:29.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.721][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:29.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:29.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.726][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:29.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:29.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.730][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:29.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:29.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.735][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:29.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:29.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.740][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:29.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:29.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.745][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.749][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.754][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:29.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.836][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:29.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:29.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.841][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:29.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:29.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.845][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:29.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:29.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:29.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:29.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:29.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:29.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:29.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:29.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:29.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:29.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.871][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:29.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:29.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:29.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:29.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:29.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:29.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:29.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:29.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:29.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:29.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.894][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:29.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:29.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.899][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:29.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:29.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.904][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:29.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:29.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.913][private$entriesToListOfDataframes] Entry converted to data frame: [1, 14]: [accession, ms.mode, chrom.col.id, chrom.rt, chrom.rt.unit, ...] [C1, pos, col1, 5.69, min, ...].
biodb.DEBUG[2025-04-19 16:07:29.914][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:07:29.915][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:07:29.919][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.920][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.923][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.924][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.925][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.927][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:29.929][private$matchingMzWithSpectra] M/Z values to process [1]: "112.07569"
biodb.TRACE[2025-04-19 16:07:29.930][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.932][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.934][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.935][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.936][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:29.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:29.946][private$selectByRange] Filtering on field "peak.mztheo", with range: [112.07512962155, 112.07625037845].
biodb.DEBUG[2025-04-19 16:07:29.948][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:29.951][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.TRACE[2025-04-19 16:07:29.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:29.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:29.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:29.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:29.980][self$filterEntriesOnRt] 1 spectra remaining after chrom col filtering: C1.
biodb.TRACE[2025-04-19 16:07:29.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:29.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:29.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:29.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:29.991][private$computeRtRange] At step 1, RT range is [252.798, 252.798] (s).
biodb.DEBUG[2025-04-19 16:07:29.992][private$computeRtRange] RT tol is 5 (s).
biodb.DEBUG[2025-04-19 16:07:29.993][private$computeRtRange] At step 2, RT range is [247.798, 257.798] (s).
biodb.DEBUG[2025-04-19 16:07:29.994][private$computeRtRange] RT tol exp is 0.8.
biodb.DEBUG[2025-04-19 16:07:29.995][private$computeRtRange] At step 3, RT range is [164.195, 341.4] (s).
biodb.TRACE[2025-04-19 16:07:29.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:29.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:30.044][self$filterEntriesOnRt] Testing if RT value 252.797659134325 (s) is in range [341.4;341.4] (s) of database entry C1. Used range (after applying tolerances) for RT value is [164.195318143508, 341.400000125141] (s).
biodb.TRACE[2025-04-19 16:07:30.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:30.059][self$filterEntriesOnRt] 1 spectra remaining after retention time filtering:C1.
biodb.DEBUG[2025-04-19 16:07:30.060][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "C1"
biodb.DEBUG[2025-04-19 16:07:30.062][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:07:30.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:07:30.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:30.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:30.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:30.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:07:30.070][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:30.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:30.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.075][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:30.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:30.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.079][private$selectFields] Fields none
biodb.TRACE[2025-04-19 16:07:30.081][private$selectFields]
biodb.TRACE[2025-04-19 16:07:30.082][private$selectFields] Fields is null: TRUE
biodb.TRACE[2025-04-19 16:07:30.083][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:07:30.084][private$selectFields] Fields [14]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, chrom.col.id, chrom.rt, chrom.rt.unit, formula, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:07:30.085][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.086][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.090][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.091][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.094][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:30.096][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:30.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.099][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:30.100][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:30.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.104][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:30.105][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:30.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.107][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.108][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.109][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.112][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.113][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.114][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.117][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.119][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.121][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.122][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:30.123][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:30.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.126][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:30.128][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:30.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.130][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.131][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:30.132][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:30.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.135][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.136][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:30.137][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:30.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.139][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.141][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:30.142][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:30.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.144][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.145][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:30.146][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:30.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.149][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.150][private$selectFields] Fields [14]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, chrom.col.id, chrom.rt, chrom.rt.unit, formula, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:07:30.151][private$organizeFieldsByGroups] Fields [14]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, chrom.col.id, chrom.rt, chrom.rt.unit, formula, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:07:30.152][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.153][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.156][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.157][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.158][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.162][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:30.163][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:30.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.166][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:30.167][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:30.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.171][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:30.172][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:30.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.175][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.177][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.179][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.180][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.181][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.185][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.186][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.190][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:30.191][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:30.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.198][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.199][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:30.201][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:30.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.204][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:30.205][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:30.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.208][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:30.210][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:30.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.212][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.213][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:30.214][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:30.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.218][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:30.219][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:30.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.221][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.222][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "chrom.col.id", "chrom.rt", "chrom.rt.unit", "formula", "molecular.mass", "name", "chrom.col.name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2025-04-19 16:07:30.223][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:30.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:30.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.228][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:30.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:30.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.233][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:30.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:30.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.238][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:30.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:30.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.242][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:30.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:30.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.250][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:30.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:30.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.255][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:30.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:30.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.259][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:30.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:30.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.264][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:30.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:30.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.269][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:30.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:30.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.274][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:30.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:30.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.279][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:30.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:30.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:30.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:30.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.360][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:30.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:30.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.365][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:30.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:30.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:30.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:30.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:30.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:30.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:30.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:30.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.384][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:30.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:30.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:30.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:30.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.393][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:30.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:30.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:30.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:30.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:30.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:30.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:30.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:30.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.412][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:30.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:30.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.416][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:30.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:30.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.421][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:30.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:30.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.431][private$entriesToListOfDataframes] Entry converted to data frame: [1, 14]: [accession, ms.mode, chrom.col.id, chrom.rt, chrom.rt.unit, ...] [C1, pos, col1, 5.69, min, ...].
biodb.DEBUG[2025-04-19 16:07:30.432][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:07:30.433][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:07:30.437][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.438][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.440][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.441][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.442][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.445][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:30.446][private$matchingMzWithSpectra] M/Z values to process [1]: "112.07569"
biodb.TRACE[2025-04-19 16:07:30.448][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.449][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.451][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.452][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.454][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:30.463][private$selectByRange] Filtering on field "peak.mztheo", with range: [112.07512962155, 112.07625037845].
biodb.DEBUG[2025-04-19 16:07:30.465][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:30.468][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.TRACE[2025-04-19 16:07:30.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:30.497][self$filterEntriesOnRt] 1 spectra remaining after chrom col filtering: C1.
biodb.TRACE[2025-04-19 16:07:30.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:30.508][private$computeRtRange] At step 1, RT range is [252.798, 252.798] (s).
biodb.DEBUG[2025-04-19 16:07:30.509][private$computeRtRange] RT tol is 5 (s).
biodb.DEBUG[2025-04-19 16:07:30.510][private$computeRtRange] At step 2, RT range is [247.798, 257.798] (s).
biodb.DEBUG[2025-04-19 16:07:30.511][private$computeRtRange] RT tol exp is 0.8.
biodb.DEBUG[2025-04-19 16:07:30.513][private$computeRtRange] At step 3, RT range is [164.195, 341.4] (s).
biodb.TRACE[2025-04-19 16:07:30.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:30.561][self$filterEntriesOnRt] Testing if RT value 252.797658134325 (s) is in range [341.4;341.4] (s) of database entry C1. Used range (after applying tolerances) for RT value is [164.195317408075, 341.399998860574] (s).
biodb.DEBUG[2025-04-19 16:07:30.563][self$filterEntriesOnRt] 0 spectra remaining after retention time filtering:.
biodb.DEBUG[2025-04-19 16:07:30.564][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 0 spectra: none
biodb.TRACE[2025-04-19 16:07:30.567][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.569][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.571][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.572][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.573][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.581][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:30.582][private$matchingMzWithSpectra] M/Z values to process [1]: "112.07569"
biodb.TRACE[2025-04-19 16:07:30.584][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.585][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.587][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.588][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.590][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.592][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:30.599][private$selectByRange] Filtering on field "peak.mztheo", with range: [112.07512962155, 112.07625037845].
biodb.DEBUG[2025-04-19 16:07:30.601][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:30.604][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.TRACE[2025-04-19 16:07:30.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:30.633][self$filterEntriesOnRt] 1 spectra remaining after chrom col filtering: C1.
biodb.TRACE[2025-04-19 16:07:30.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:30.644][private$computeRtRange] At step 1, RT range is [252.798, 252.798] (s).
biodb.DEBUG[2025-04-19 16:07:30.645][private$computeRtRange] RT tol is 5 (s).
biodb.DEBUG[2025-04-19 16:07:30.646][private$computeRtRange] At step 2, RT range is [247.798, 257.798] (s).
biodb.DEBUG[2025-04-19 16:07:30.647][private$computeRtRange] RT tol exp is 0.8.
biodb.DEBUG[2025-04-19 16:07:30.648][private$computeRtRange] At step 3, RT range is [164.195, 341.4] (s).
biodb.TRACE[2025-04-19 16:07:30.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:30.696][self$filterEntriesOnRt] Testing if RT value 252.797658134325 (s) is in range [341.4;341.4] (s) of database entry C1. Used range (after applying tolerances) for RT value is [164.195317408075, 341.399998860574] (s).
biodb.DEBUG[2025-04-19 16:07:30.697][self$filterEntriesOnRt] 0 spectra remaining after retention time filtering:.
biodb.DEBUG[2025-04-19 16:07:30.698][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 0 spectra: none
biodb.TRACE[2025-04-19 16:07:30.703][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.704][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.708][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.709][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.711][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:30.712][private$matchingMzWithSpectra] M/Z values to process [1]: "112.07569"
biodb.TRACE[2025-04-19 16:07:30.714][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.715][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.718][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.719][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.720][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.722][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:30.730][private$selectByRange] Filtering on field "peak.mztheo", with range: [112.07512962155, 112.07625037845].
biodb.DEBUG[2025-04-19 16:07:30.732][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:30.735][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.TRACE[2025-04-19 16:07:30.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:30.764][self$filterEntriesOnRt] 1 spectra remaining after chrom col filtering: C1.
biodb.TRACE[2025-04-19 16:07:30.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:30.774][private$computeRtRange] At step 1, RT range is [487.861, 487.861] (s).
biodb.DEBUG[2025-04-19 16:07:30.775][private$computeRtRange] RT tol is 5 (s).
biodb.DEBUG[2025-04-19 16:07:30.777][private$computeRtRange] At step 2, RT range is [482.861, 492.861] (s).
biodb.DEBUG[2025-04-19 16:07:30.778][private$computeRtRange] RT tol exp is 0.8.
biodb.DEBUG[2025-04-19 16:07:30.779][private$computeRtRange] At step 3, RT range is [341.4, 634.322] (s).
biodb.TRACE[2025-04-19 16:07:30.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:30.827][self$filterEntriesOnRt] Testing if RT value 487.861066719004 (s) is in range [341.4;341.4] (s) of database entry C1. Used range (after applying tolerances) for RT value is [341.399999941075, 634.322133496933] (s).
biodb.TRACE[2025-04-19 16:07:30.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:30.842][self$filterEntriesOnRt] 1 spectra remaining after retention time filtering:C1.
biodb.DEBUG[2025-04-19 16:07:30.843][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 1 spectra: [1]: "C1"
biodb.DEBUG[2025-04-19 16:07:30.844][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:07:30.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:07:30.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:30.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:30.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:30.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:07:30.854][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:30.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:30.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.861][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:30.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:30.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.868][private$selectFields] Fields none
biodb.TRACE[2025-04-19 16:07:30.869][private$selectFields]
biodb.TRACE[2025-04-19 16:07:30.871][private$selectFields] Fields is null: TRUE
biodb.TRACE[2025-04-19 16:07:30.873][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:07:30.874][private$selectFields] Fields [14]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, chrom.col.id, chrom.rt, chrom.rt.unit, formula, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:07:30.876][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.878][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.881][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.882][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.884][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.887][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.889][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:30.891][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:30.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.894][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.895][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:30.896][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:30.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.900][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:30.901][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:30.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.903][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.904][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.905][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.908][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.909][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.910][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.912][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.913][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.915][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.917][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.918][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:30.919][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:30.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.922][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.923][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:30.924][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:30.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.926][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.927][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:30.929][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:30.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.932][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:30.933][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:30.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.936][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.937][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:30.938][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:30.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.940][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.941][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:30.943][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:30.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.945][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.946][private$selectFields] Fields [14]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, chrom.col.id, chrom.rt, chrom.rt.unit, formula, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:07:30.947][private$organizeFieldsByGroups] Fields [14]: "accession, ms.mode, peak.mztheo, peak.comp, peak.attr, chrom.col.id, chrom.rt, chrom.rt.unit, formula, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:07:30.948][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:30.950][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:30.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.952][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.953][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.954][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:30.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.957][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.958][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:30.959][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:30.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.961][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.963][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:30.964][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:30.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.966][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.967][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:30.969][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:30.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.976][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.977][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.978][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:30.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.982][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.983][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:30.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.985][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.987][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.988][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:30.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.991][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:30.992][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:30.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.995][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:30.996][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:30.997][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:30.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:30.999][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.000][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:31.001][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:31.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.004][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.005][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:31.006][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:31.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.009][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:31.010][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:31.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.013][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.014][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:31.015][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:31.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.017][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.018][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ms.mode", "chrom.col.id", "chrom.rt", "chrom.rt.unit", "formula", "molecular.mass", "name", "chrom.col.name", "mass.csv.file.id"), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2025-04-19 16:07:31.020][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:31.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:31.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.024][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:31.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:31.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.029][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:31.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:31.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.034][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:31.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:31.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.039][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:31.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:31.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.043][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:31.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:31.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.048][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:31.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:31.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.053][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:31.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:31.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.057][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:31.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:31.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.062][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:31.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:31.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.067][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:31.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:31.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.072][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:31.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:31.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:31.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:31.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:31.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:31.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:31.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:31.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:31.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:31.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:31.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:31.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:31.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:31.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.148][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:31.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:31.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.152][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:31.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:31.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:31.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:31.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:31.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:31.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:31.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:31.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:31.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:31.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:31.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:31.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:31.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:31.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:31.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:31.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:31.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:31.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:31.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:31.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:31.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:31.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.205][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:31.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:31.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.209][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:31.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:31.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.214][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:31.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:31.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.224][private$entriesToListOfDataframes] Entry converted to data frame: [1, 14]: [accession, ms.mode, chrom.col.id, chrom.rt, chrom.rt.unit, ...] [C1, pos, col1, 5.69, min, ...].
biodb.DEBUG[2025-04-19 16:07:31.225][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:07:31.226][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:07:31.230][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.231][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.235][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.236][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.238][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:31.240][private$matchingMzWithSpectra] M/Z values to process [1]: "112.07569"
biodb.TRACE[2025-04-19 16:07:31.241][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.243][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.246][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.247][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.250][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:31.257][private$selectByRange] Filtering on field "peak.mztheo", with range: [112.07512962155, 112.07625037845].
biodb.DEBUG[2025-04-19 16:07:31.259][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:31.262][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.TRACE[2025-04-19 16:07:31.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:31.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:31.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:31.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:31.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:31.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:31.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:31.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:31.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:31.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:31.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:31.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:31.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:31.292][self$filterEntriesOnRt] 1 spectra remaining after chrom col filtering: C1.
biodb.TRACE[2025-04-19 16:07:31.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:31.303][private$computeRtRange] At step 1, RT range is [487.861, 487.861] (s).
biodb.DEBUG[2025-04-19 16:07:31.304][private$computeRtRange] RT tol is 5 (s).
biodb.DEBUG[2025-04-19 16:07:31.305][private$computeRtRange] At step 2, RT range is [482.861, 492.861] (s).
biodb.DEBUG[2025-04-19 16:07:31.306][private$computeRtRange] RT tol exp is 0.8.
biodb.DEBUG[2025-04-19 16:07:31.307][private$computeRtRange] At step 3, RT range is [341.4, 634.322] (s).
biodb.TRACE[2025-04-19 16:07:31.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:31.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:31.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:31.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:31.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:31.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:31.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:31.361][self$filterEntriesOnRt] Testing if RT value 487.861067719004 (s) is in range [341.4;341.4] (s) of database entry C1. Used range (after applying tolerances) for RT value is [341.400000709106, 634.322134728903] (s).
biodb.DEBUG[2025-04-19 16:07:31.362][self$filterEntriesOnRt] 0 spectra remaining after retention time filtering:.
biodb.DEBUG[2025-04-19 16:07:31.363][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 0 spectra: none
biodb.TRACE[2025-04-19 16:07:31.367][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.368][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.371][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.372][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.373][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.375][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:31.377][private$matchingMzWithSpectra] M/Z values to process [1]: "112.07569"
biodb.TRACE[2025-04-19 16:07:31.378][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.380][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.383][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.384][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.386][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:31.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:31.394][private$selectByRange] Filtering on field "peak.mztheo", with range: [112.07512962155, 112.07625037845].
biodb.DEBUG[2025-04-19 16:07:31.396][private$selectByRange] 1 values to filter on field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:31.398][self$filterEntriesOnRt] Getting entries from spectra IDs.
biodb.TRACE[2025-04-19 16:07:31.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:31.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:31.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:31.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:31.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:31.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:31.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:31.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:31.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:31.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:31.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:31.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:31.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:31.428][self$filterEntriesOnRt] 1 spectra remaining after chrom col filtering: C1.
biodb.TRACE[2025-04-19 16:07:31.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:31.438][private$computeRtRange] At step 1, RT range is [487.861, 487.861] (s).
biodb.DEBUG[2025-04-19 16:07:31.439][private$computeRtRange] RT tol is 5 (s).
biodb.DEBUG[2025-04-19 16:07:31.440][private$computeRtRange] At step 2, RT range is [482.861, 492.861] (s).
biodb.DEBUG[2025-04-19 16:07:31.441][private$computeRtRange] RT tol exp is 0.8.
biodb.DEBUG[2025-04-19 16:07:31.443][private$computeRtRange] At step 3, RT range is [341.4, 634.322] (s).
biodb.TRACE[2025-04-19 16:07:31.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:31.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:31.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:31.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:31.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:31.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:31.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:31.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:31.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:31.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:31.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:31.490][self$filterEntriesOnRt] Testing if RT value 487.861067719004 (s) is in range [341.4;341.4] (s) of database entry C1. Used range (after applying tolerances) for RT value is [341.400000709106, 634.322134728903] (s).
biodb.DEBUG[2025-04-19 16:07:31.492][self$filterEntriesOnRt] 0 spectra remaining after retention time filtering:.
biodb.DEBUG[2025-04-19 16:07:31.493][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 0 spectra: none
biodb.INFO [2025-04-19 16:07:31.502][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-04-19 16:07:31.503][self$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2025-04-19 16:07:31.505][self$deleteConn] Connector "mass.csv.file.1" deleted.
biodb.INFO [2025-04-19 16:07:31.506][self$deleteConn] Connector "mass.csv.file.2" deleted.
biodb.INFO [2025-04-19 16:07:31.507][self$deleteConn] Connector "mass.csv.file.3" deleted.
biodb.DEBUG[2025-04-19 16:07:31.508][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-19 16:07:31.509][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:31.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:31.511][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-04-19 16:07:31.527][biodb::testContext]
biodb.INFO [2025-04-19 16:07:31.529][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:07:31.530][biodb::testContext] Test context - MassSqlite long generic tests
biodb.INFO [2025-04-19 16:07:31.531][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:07:31.532][biodb::testContext]
biodb.INFO [2025-04-19 16:07:31.535][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-19 16:07:31.538][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/definitions.yml".
biodb.DEBUG[2025-04-19 16:07:31.543][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:07:31.544][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-19 16:07:31.545][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-19 16:07:31.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.550][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-19 16:07:31.551][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-19 16:07:31.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.555][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-19 16:07:31.556][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-19 16:07:31.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.561][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-19 16:07:31.562][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-19 16:07:31.563][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-19 16:07:31.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.567][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-19 16:07:31.568][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-19 16:07:31.570][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-19 16:07:31.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.574][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-19 16:07:31.575][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-19 16:07:31.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.579][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-19 16:07:31.580][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-19 16:07:31.582][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-19 16:07:31.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.586][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-19 16:07:31.587][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-19 16:07:31.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.591][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-19 16:07:31.593][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-19 16:07:31.594][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-19 16:07:31.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.598][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-19 16:07:31.599][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-19 16:07:31.600][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-19 16:07:31.601][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-19 16:07:31.603][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-19 16:07:31.604][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-19 16:07:31.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.608][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-19 16:07:31.609][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-19 16:07:31.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.614][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-19 16:07:31.615][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-19 16:07:31.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.619][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-19 16:07:31.620][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-19 16:07:31.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.624][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-19 16:07:31.626][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-19 16:07:31.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.630][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-19 16:07:31.631][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-19 16:07:31.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.635][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-19 16:07:31.637][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-19 16:07:31.640][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-19 16:07:31.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.644][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-19 16:07:31.645][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-19 16:07:31.646][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-19 16:07:31.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.651][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-19 16:07:31.653][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:31.654][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-19 16:07:31.655][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:31.656][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:07:31.658][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:31.659][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:07:31.660][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:31.661][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:07:31.662][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-19 16:07:31.664][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:07:31.665][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:31.666][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-19 16:07:31.667][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:07:31.670][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:31.671][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:31.672][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:07:31.672][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:31.672][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:31.672][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:31.672][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:31.673][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:07:31.674][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:31.676][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:31.677][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:07:31.678][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:31.679][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:31.680][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:07:31.681][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:31.682][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:07:31.684][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:07:31.685][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:31.686][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:31.687][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-19 16:07:31.689][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:31.690][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-19 16:07:31.692][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:31.693][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:07:31.694][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:31.695][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:07:31.696][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:31.698][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:07:31.699][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-19 16:07:31.700][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:07:31.701][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:31.702][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-19 16:07:31.704][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:07:31.705][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:31.706][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:31.707][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:07:31.707][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:31.707][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:31.707][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:31.707][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:31.708][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:07:31.710][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:31.711][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:31.712][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:07:31.713][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:31.714][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:31.715][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:07:31.716][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:31.718][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:07:31.719][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:07:31.720][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:31.721][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:31.722][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-19 16:07:31.724][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:31.725][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-19 16:07:31.727][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:31.728][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:07:31.729][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:31.730][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:07:31.731][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:31.733][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:07:31.734][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-19 16:07:31.735][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:07:31.736][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:31.737][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-19 16:07:31.739][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:07:31.740][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:31.741][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:31.742][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:31.743][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:07:31.745][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:31.746][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:31.747][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:07:31.748][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:31.755][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:31.756][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:07:31.757][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:31.758][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:07:31.760][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:07:31.761][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:31.762][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:31.763][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-19 16:07:31.765][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:31.766][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-19 16:07:31.767][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:31.769][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:07:31.770][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:31.771][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:07:31.772][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:31.773][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:07:31.774][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-19 16:07:31.776][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:07:31.777][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:31.778][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-19 16:07:31.779][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:07:31.780][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:31.781][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:07:31.783][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:31.784][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:07:31.785][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:31.786][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:31.787][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:07:31.788][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:07:31.789][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:07:31.790][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:07:31.792][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:31.793][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:07:31.794][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:07:31.795][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:07:31.796][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:07:31.798][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:07:31.799][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.801][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:31.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:31.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:31.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:31.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:31.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:31.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:31.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:31.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:31.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:31.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:31.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:31.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.833][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:31.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:31.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:31.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:31.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:31.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:31.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:31.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:31.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:31.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:31.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:31.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:31.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:31.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:31.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:31.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:31.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:31.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:31.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:31.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:31.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:31.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:31.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:31.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:31.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:31.892][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-19 16:07:31.894][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-19 16:07:31.895][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-19 16:07:31.897][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-19 16:07:31.898][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-19 16:07:31.900][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-19 16:07:31.901][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-19 16:07:31.903][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-19 16:07:31.904][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-19 16:07:31.906][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-19 16:07:31.907][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-19 16:07:31.909][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-19 16:07:31.910][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-19 16:07:31.912][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-19 16:07:31.913][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-19 16:07:31.915][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-19 16:07:31.917][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-19 16:07:31.918][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-19 16:07:31.920][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-19 16:07:31.921][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-19 16:07:31.923][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-19 16:07:31.924][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-19 16:07:31.926][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-19 16:07:31.927][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-19 16:07:31.929][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-19 16:07:31.930][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-19 16:07:31.932][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-19 16:07:31.933][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-19 16:07:31.935][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-19 16:07:31.936][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-19 16:07:31.938][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-19 16:07:31.939][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-19 16:07:31.941][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-19 16:07:31.942][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-19 16:07:31.944][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-19 16:07:31.945][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-19 16:07:31.947][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-19 16:07:31.948][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-19 16:07:31.950][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-19 16:07:31.951][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-19 16:07:31.953][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-19 16:07:31.954][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-19 16:07:31.956][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-19 16:07:31.958][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-19 16:07:31.959][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-19 16:07:31.961][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-19 16:07:31.962][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-19 16:07:31.964][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-19 16:07:31.966][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-19 16:07:31.967][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-19 16:07:31.969][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-19 16:07:31.970][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-19 16:07:31.972][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-19 16:07:31.973][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-19 16:07:31.975][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-19 16:07:31.976][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-19 16:07:31.978][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-19 16:07:31.979][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-19 16:07:31.981][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-19 16:07:31.982][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-19 16:07:31.984][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-19 16:07:31.985][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-19 16:07:31.987][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-19 16:07:31.988][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-19 16:07:31.990][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-19 16:07:31.991][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-19 16:07:31.993][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-19 16:07:31.994][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-19 16:07:31.996][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-19 16:07:31.997][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-19 16:07:31.999][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-19 16:07:32.000][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-19 16:07:32.002][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-19 16:07:32.004][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-19 16:07:32.005][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-19 16:07:32.007][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-19 16:07:32.008][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-19 16:07:32.010][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-19 16:07:32.011][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-19 16:07:32.013][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-19 16:07:32.014][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-19 16:07:32.016][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-19 16:07:32.017][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-19 16:07:32.019][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-19 16:07:32.021][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-04-19 16:07:32.026][super$initialize] Initialize connector mass.sqlite.
biodb.DEBUG[2025-04-19 16:07:32.028][biodb$getFactory()$createConn] Creating new connector mass.sqlite for database class mass.sqlite , with base URL "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/generated/massbank_extract_full.sqlite".
biodb.INFO [2025-04-19 16:07:32.032][biodb::testThat]
biodb.INFO [2025-04-19 16:07:32.033][biodb::testThat] Running test function  test_cache_for_local_db  (" We can use the cache system for a local database. ").
biodb.INFO [2025-04-19 16:07:32.034][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:32.035][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:32.037][bdb$getConfig()$set] Set key use.cache.for.local.db to TRUE.
biodb.DEBUG[2025-04-19 16:07:32.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:07:32.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:32.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:32.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:32.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:07:32.046][private$loadEntries] Creating entries from ids [1]: "KNA00776".
biodb.DEBUG[2025-04-19 16:07:32.048][conn$getEntryContent] Get Mass spectra SQLite entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:32.052][cch$loadFileContent] Trying to load 1 files from cache: [1]: "KNA00776".
biodb.INFO [2025-04-19 16:07:32.053][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.TRACE[2025-04-19 16:07:32.065][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:32.067][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.TRACE[2025-04-19 16:07:32.077][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:32.078][conn$getEntryContent] 0 Mass spectra SQLite entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:32.080][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra SQLite database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/generated/massbank_extract_full.sqlite".
biodb.DEBUG[2025-04-19 16:07:32.081][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:32.082][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2025-04-19 16:07:32.115][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:32.117][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:32.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.121][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:32.122][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:32.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.128][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:32.129][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:32.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.133][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:32.134][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:32.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.139][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:32.140][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:32.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.144][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:32.145][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:32.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.150][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:32.151][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:32.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.153][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.155][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:32.157][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:32.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.159][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.161][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:32.162][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:32.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.164][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.166][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:32.168][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:32.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.172][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:32.173][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:32.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.175][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.177][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:32.179][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:32.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.183][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:32.184][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:32.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.186][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.188][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:32.190][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:32.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.192][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:32.194][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.INFO [2025-04-19 16:07:32.206][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.TRACE[2025-04-19 16:07:32.216][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca/KNA00776.json"
biodb.INFO [2025-04-19 16:07:32.240][biodb::testThat]
biodb.INFO [2025-04-19 16:07:32.241][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-04-19 16:07:32.242][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:32.243][biodb::testThat]
biodb.TRACE[2025-04-19 16:07:32.247][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/testref/entry-mass.sqlite-KNA00776-content.json".
biodb.DEBUG[2025-04-19 16:07:32.249][biodb$getFactory()$createEntryFromCo ...] Creating Mass spectra SQLite entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:07:32.252][biodb$getFactory()$createEntryFromCo ...] Parsing 1 Mass spectra SQLite entries.
biodb.DEBUG[2025-04-19 16:07:32.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:07:32.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:32.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:32.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:32.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:07:32.260][entry.fields$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:07:32.262][entry.fields$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:07:32.263][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.264][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.265][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.TRACE[2025-04-19 16:07:32.266][entry.fields$get] Asked field names are: aa.seq.length.
biodb.TRACE[2025-04-19 16:07:32.268][entry.fields$get] Realnames of fields are: aa.seq.length.
biodb.TRACE[2025-04-19 16:07:32.269][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.270][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.271][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.271][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.TRACE[2025-04-19 16:07:32.272][entry.fields$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:07:32.274][entry.fields$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:07:32.275][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.276][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.277][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.277][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.277][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.TRACE[2025-04-19 16:07:32.278][entry.fields$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:32.280][entry.fields$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:32.281][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.282][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.283][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.283][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.283][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.283][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.TRACE[2025-04-19 16:07:32.284][entry.fields$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:07:32.286][entry.fields$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:07:32.287][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.288][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.289][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.289][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.289][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.289][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.289][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.TRACE[2025-04-19 16:07:32.290][entry.fields$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-19 16:07:32.292][entry.fields$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:32.293][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.294][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.295][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.295][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.295][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.295][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.295][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.295][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.TRACE[2025-04-19 16:07:32.296][entry.fields$get] Asked field names are: catalytic.activity.
biodb.TRACE[2025-04-19 16:07:32.298][entry.fields$get] Realnames of fields are: catalytic.activity.
biodb.TRACE[2025-04-19 16:07:32.299][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.300][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.301][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.301][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.301][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.301][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.301][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.301][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.301][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.TRACE[2025-04-19 16:07:32.302][entry.fields$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:07:32.304][entry.fields$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:07:32.305][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.306][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.307][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.307][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.307][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.307][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.307][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.307][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.307][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.307][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.TRACE[2025-04-19 16:07:32.308][entry.fields$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:07:32.310][entry.fields$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:32.311][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.312][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.313][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.313][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.313][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.313][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.313][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.313][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.313][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.313][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.313][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.TRACE[2025-04-19 16:07:32.314][entry.fields$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-19 16:07:32.316][entry.fields$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-19 16:07:32.317][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.318][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.319][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.319][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.319][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.319][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.319][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.319][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.319][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.319][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.319][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.319][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.TRACE[2025-04-19 16:07:32.320][entry.fields$get] Asked field names are: chrom.col.constructor.
biodb.TRACE[2025-04-19 16:07:32.322][entry.fields$get] Realnames of fields are: chrom.col.constructor.
biodb.TRACE[2025-04-19 16:07:32.323][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.324][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.325][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.325][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.325][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.325][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.325][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.325][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.325][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.325][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.325][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.325][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.325][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.TRACE[2025-04-19 16:07:32.326][entry.fields$get] Asked field names are: chrom.col.diameter.
biodb.TRACE[2025-04-19 16:07:32.328][entry.fields$get] Realnames of fields are: chrom.col.diameter.
biodb.TRACE[2025-04-19 16:07:32.329][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.330][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.331][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.331][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.331][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.331][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.331][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.331][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.331][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.331][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.331][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.331][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.331][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.331][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.TRACE[2025-04-19 16:07:32.333][entry.fields$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:32.334][entry.fields$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:32.335][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.336][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.337][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.337][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.337][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.337][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.337][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.337][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.337][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.337][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.337][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.337][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.337][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.337][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.337][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.TRACE[2025-04-19 16:07:32.339][entry.fields$get] Asked field names are: chrom.col.length.
biodb.TRACE[2025-04-19 16:07:32.340][entry.fields$get] Realnames of fields are: chrom.col.length.
biodb.TRACE[2025-04-19 16:07:32.341][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.342][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.343][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.343][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.343][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.343][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.343][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.343][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.343][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.343][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.343][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.343][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.343][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.343][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.343][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.343][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.TRACE[2025-04-19 16:07:32.345][entry.fields$get] Asked field names are: chrom.col.method.protocol.
biodb.TRACE[2025-04-19 16:07:32.346][entry.fields$get] Realnames of fields are: chrom.col.method.protocol.
biodb.TRACE[2025-04-19 16:07:32.347][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.348][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.350][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.350][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.350][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.350][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.350][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.350][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.350][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.350][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.350][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.350][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.350][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.350][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.350][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.350][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.350][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.TRACE[2025-04-19 16:07:32.351][entry.fields$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:32.352][entry.fields$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:32.353][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.355][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.356][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.356][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.356][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.356][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.356][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.356][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.356][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.356][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.356][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.356][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.356][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.356][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.356][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.356][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.356][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.356][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.TRACE[2025-04-19 16:07:32.357][entry.fields$get] Asked field names are: chrom.flow.gradient.
biodb.TRACE[2025-04-19 16:07:32.359][entry.fields$get] Realnames of fields are: chrom.flow.gradient.
biodb.TRACE[2025-04-19 16:07:32.360][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.361][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.362][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.362][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.362][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.362][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.362][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.362][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.362][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.362][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.362][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.362][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.362][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.362][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.362][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.362][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.362][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.362][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.362][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.TRACE[2025-04-19 16:07:32.363][entry.fields$get] Asked field names are: chrom.flow.rate.
biodb.TRACE[2025-04-19 16:07:32.365][entry.fields$get] Realnames of fields are: chrom.flow.rate.
biodb.TRACE[2025-04-19 16:07:32.366][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.367][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.368][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.368][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.368][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.368][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.368][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.368][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.368][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.368][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.368][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.368][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.368][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.368][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.368][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.368][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.368][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.368][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.368][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.368][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.TRACE[2025-04-19 16:07:32.370][entry.fields$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:32.371][entry.fields$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:32.372][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.373][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.374][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.374][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.374][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.374][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.374][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.374][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.374][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.374][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.374][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.374][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.374][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.TRACE[2025-04-19 16:07:32.376][entry.fields$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:07:32.377][entry.fields$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:07:32.378][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.379][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.381][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.381][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.381][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.381][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.381][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.381][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.381][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.381][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.381][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.381][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.381][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.TRACE[2025-04-19 16:07:32.382][entry.fields$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:07:32.383][entry.fields$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:07:32.384][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.386][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.387][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.387][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.387][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.387][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.387][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.387][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.387][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.387][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.387][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.387][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.387][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.TRACE[2025-04-19 16:07:32.388][entry.fields$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:32.390][entry.fields$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:32.391][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.392][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.393][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.TRACE[2025-04-19 16:07:32.395][entry.fields$get] Asked field names are: chrom.solvent.
biodb.TRACE[2025-04-19 16:07:32.396][entry.fields$get] Realnames of fields are: chrom.solvent.
biodb.TRACE[2025-04-19 16:07:32.397][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.398][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.399][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.TRACE[2025-04-19 16:07:32.401][entry.fields$get] Asked field names are: cofactor.
biodb.TRACE[2025-04-19 16:07:32.402][entry.fields$get] Realnames of fields are: cofactor.
biodb.TRACE[2025-04-19 16:07:32.403][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.404][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.406][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.TRACE[2025-04-19 16:07:32.407][entry.fields$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:32.409][entry.fields$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2025-04-19 16:07:32.410][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.411][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.412][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.TRACE[2025-04-19 16:07:32.414][entry.fields$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:07:32.415][entry.fields$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:07:32.416][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.417][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.419][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.TRACE[2025-04-19 16:07:32.420][entry.fields$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:07:32.421][entry.fields$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:07:32.423][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.424][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.425][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.TRACE[2025-04-19 16:07:32.427][entry.fields$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:07:32.428][entry.fields$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:07:32.429][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.430][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.431][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.TRACE[2025-04-19 16:07:32.433][entry.fields$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:07:32.434][entry.fields$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:07:32.435][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.436][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.438][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.TRACE[2025-04-19 16:07:32.439][entry.fields$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:07:32.441][entry.fields$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:07:32.442][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.443][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.444][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.TRACE[2025-04-19 16:07:32.446][entry.fields$get] Asked field names are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:32.447][entry.fields$get] Realnames of fields are: comp.sqlite.id.
biodb.TRACE[2025-04-19 16:07:32.448][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.449][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.451][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.TRACE[2025-04-19 16:07:32.452][entry.fields$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-19 16:07:32.454][entry.fields$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-19 16:07:32.455][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.456][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.457][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.TRACE[2025-04-19 16:07:32.459][entry.fields$get] Asked field names are: composition.
biodb.TRACE[2025-04-19 16:07:32.460][entry.fields$get] Realnames of fields are: composition.
biodb.TRACE[2025-04-19 16:07:32.461][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.462][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.464][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.TRACE[2025-04-19 16:07:32.465][entry.fields$get] Asked field names are: compound.id.
biodb.TRACE[2025-04-19 16:07:32.472][entry.fields$get] Realnames of fields are: compound.id.
biodb.TRACE[2025-04-19 16:07:32.474][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.475][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.476][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.TRACE[2025-04-19 16:07:32.478][entry.fields$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:07:32.479][entry.fields$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:07:32.480][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.481][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.482][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.TRACE[2025-04-19 16:07:32.484][entry.fields$get] Asked field names are: ec.
biodb.TRACE[2025-04-19 16:07:32.485][entry.fields$get] Realnames of fields are: ec.
biodb.TRACE[2025-04-19 16:07:32.486][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.487][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.489][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.TRACE[2025-04-19 16:07:32.490][entry.fields$get] Asked field names are: equation.
biodb.TRACE[2025-04-19 16:07:32.492][entry.fields$get] Realnames of fields are: equation.
biodb.TRACE[2025-04-19 16:07:32.493][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.494][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.495][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.TRACE[2025-04-19 16:07:32.497][entry.fields$get] Asked field names are: expasy.enzyme.id.
biodb.TRACE[2025-04-19 16:07:32.498][entry.fields$get] Realnames of fields are: expasy.enzyme.id.
biodb.TRACE[2025-04-19 16:07:32.499][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.500][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.501][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.TRACE[2025-04-19 16:07:32.503][entry.fields$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:32.504][entry.fields$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:32.505][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.507][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.508][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.TRACE[2025-04-19 16:07:32.510][entry.fields$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:07:32.511][entry.fields$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:07:32.512][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.513][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.514][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.TRACE[2025-04-19 16:07:32.516][entry.fields$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-19 16:07:32.517][entry.fields$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-19 16:07:32.518][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.519][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.521][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.TRACE[2025-04-19 16:07:32.522][entry.fields$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:07:32.524][entry.fields$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:07:32.525][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.526][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.527][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.TRACE[2025-04-19 16:07:32.529][entry.fields$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:07:32.530][entry.fields$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:07:32.531][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.532][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.534][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.TRACE[2025-04-19 16:07:32.535][entry.fields$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:32.537][entry.fields$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:32.538][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.539][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.540][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.TRACE[2025-04-19 16:07:32.542][entry.fields$get] Asked field names are: kegg.genes.id.
biodb.TRACE[2025-04-19 16:07:32.543][entry.fields$get] Realnames of fields are: kegg.genes.id.
biodb.TRACE[2025-04-19 16:07:32.544][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.545][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.547][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.TRACE[2025-04-19 16:07:32.548][entry.fields$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:07:32.550][entry.fields$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:07:32.551][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.552][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.553][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.TRACE[2025-04-19 16:07:32.555][entry.fields$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:32.556][entry.fields$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:32.557][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.558][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.560][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.TRACE[2025-04-19 16:07:32.561][entry.fields$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:32.563][entry.fields$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:32.564][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.565][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.566][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.TRACE[2025-04-19 16:07:32.568][entry.fields$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:32.569][entry.fields$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:07:32.570][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.572][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.573][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.TRACE[2025-04-19 16:07:32.575][entry.fields$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:32.576][entry.fields$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:32.577][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.578][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.579][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.TRACE[2025-04-19 16:07:32.581][entry.fields$get] Asked field names are: ms.level.
biodb.TRACE[2025-04-19 16:07:32.583][entry.fields$get] Realnames of fields are: ms.level.
biodb.TRACE[2025-04-19 16:07:32.584][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.585][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.586][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.TRACE[2025-04-19 16:07:32.588][entry.fields$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:32.589][entry.fields$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:32.590][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.591][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.593][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.TRACE[2025-04-19 16:07:32.595][entry.fields$get] Asked field names are: msdev.
biodb.TRACE[2025-04-19 16:07:32.596][entry.fields$get] Realnames of fields are: msdev.
biodb.TRACE[2025-04-19 16:07:32.597][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.598][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.599][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.TRACE[2025-04-19 16:07:32.601][entry.fields$get] Asked field names are: msdevtype.
biodb.TRACE[2025-04-19 16:07:32.602][entry.fields$get] Realnames of fields are: msdevtype.
biodb.TRACE[2025-04-19 16:07:32.604][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.605][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.606][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.TRACE[2025-04-19 16:07:32.608][entry.fields$get] Asked field names are: msprecannot.
biodb.TRACE[2025-04-19 16:07:32.609][entry.fields$get] Realnames of fields are: msprecannot.
biodb.TRACE[2025-04-19 16:07:32.610][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.611][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.613][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.TRACE[2025-04-19 16:07:32.615][entry.fields$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:32.616][entry.fields$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:32.617][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.618][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.619][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2025-04-19 16:07:32.621][entry.fields$get] Asked field names are: mstype.
biodb.TRACE[2025-04-19 16:07:32.622][entry.fields$get] Realnames of fields are: mstype.
biodb.TRACE[2025-04-19 16:07:32.624][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.625][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.626][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.TRACE[2025-04-19 16:07:32.628][entry.fields$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:32.629][entry.fields$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:32.630][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.631][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.633][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.TRACE[2025-04-19 16:07:32.635][entry.fields$get] Asked field names are: nb.compounds.
biodb.TRACE[2025-04-19 16:07:32.636][entry.fields$get] Realnames of fields are: nb.compounds.
biodb.TRACE[2025-04-19 16:07:32.637][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.638][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.639][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.TRACE[2025-04-19 16:07:32.642][entry.fields$get] Asked field names are: nb.peaks.
biodb.TRACE[2025-04-19 16:07:32.643][entry.fields$get] Realnames of fields are: nb.peaks.
biodb.TRACE[2025-04-19 16:07:32.644][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.645][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.646][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.TRACE[2025-04-19 16:07:32.648][entry.fields$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:07:32.650][entry.fields$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:07:32.651][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.652][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.653][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.TRACE[2025-04-19 16:07:32.655][entry.fields$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:07:32.656][entry.fields$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:07:32.657][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.658][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:32.660][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.TRACE[2025-04-19 16:07:32.662][entry.fields$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:07:32.663][entry.fields$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:07:32.664][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.665][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:32.666][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.TRACE[2025-04-19 16:07:32.668][entry.fields$get] Asked field names are: nt.seq.
biodb.TRACE[2025-04-19 16:07:32.670][entry.fields$get] Realnames of fields are: nt.seq.
biodb.TRACE[2025-04-19 16:07:32.671][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.672][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:32.673][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.TRACE[2025-04-19 16:07:32.675][entry.fields$get] Asked field names are: nt.seq.length.
biodb.TRACE[2025-04-19 16:07:32.677][entry.fields$get] Realnames of fields are: nt.seq.length.
biodb.TRACE[2025-04-19 16:07:32.678][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.679][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:32.680][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.TRACE[2025-04-19 16:07:32.682][entry.fields$get] Asked field names are: organism.
biodb.TRACE[2025-04-19 16:07:32.683][entry.fields$get] Realnames of fields are: organism.
biodb.TRACE[2025-04-19 16:07:32.684][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.686][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.687][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.TRACE[2025-04-19 16:07:32.689][entry.fields$get] Asked field names are: pathway.class.
biodb.TRACE[2025-04-19 16:07:32.690][entry.fields$get] Realnames of fields are: pathway.class.
biodb.TRACE[2025-04-19 16:07:32.691][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.692][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:32.694][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.TRACE[2025-04-19 16:07:32.696][entry.fields$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:07:32.697][entry.fields$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:32.698][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.699][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:32.701][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.TRACE[2025-04-19 16:07:32.703][entry.fields$get] Asked field names are: peak.comp.
biodb.TRACE[2025-04-19 16:07:32.704][entry.fields$get] Realnames of fields are: peak.comp.
biodb.TRACE[2025-04-19 16:07:32.705][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.706][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:32.707][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.TRACE[2025-04-19 16:07:32.709][entry.fields$get] Asked field names are: peak.error.ppm.
biodb.TRACE[2025-04-19 16:07:32.711][entry.fields$get] Realnames of fields are: peak.error.ppm.
biodb.TRACE[2025-04-19 16:07:32.712][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.713][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:32.714][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.TRACE[2025-04-19 16:07:32.716][entry.fields$get] Asked field names are: peak.formula.
biodb.TRACE[2025-04-19 16:07:32.718][entry.fields$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:32.719][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.720][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:32.721][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.TRACE[2025-04-19 16:07:32.723][entry.fields$get] Asked field names are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:32.724][entry.fields$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:32.726][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.727][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:32.728][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.TRACE[2025-04-19 16:07:32.730][entry.fields$get] Asked field names are: peak.mass.
biodb.TRACE[2025-04-19 16:07:32.731][entry.fields$get] Realnames of fields are: peak.mass.
biodb.TRACE[2025-04-19 16:07:32.732][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.734][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2025-04-19 16:07:32.735][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.TRACE[2025-04-19 16:07:32.737][entry.fields$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:32.738][entry.fields$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:32.739][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.740][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2025-04-19 16:07:32.742][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.TRACE[2025-04-19 16:07:32.744][entry.fields$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:32.745][entry.fields$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:32.746][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.747][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2025-04-19 16:07:32.749][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.TRACE[2025-04-19 16:07:32.751][entry.fields$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:32.752][entry.fields$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:32.753][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.754][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2025-04-19 16:07:32.756][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.TRACE[2025-04-19 16:07:32.758][entry.fields$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:32.759][entry.fields$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:32.760][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.761][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2025-04-19 16:07:32.763][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.TRACE[2025-04-19 16:07:32.765][entry.fields$get] Asked field names are: peaks.
biodb.TRACE[2025-04-19 16:07:32.766][entry.fields$get] Realnames of fields are: peaks.
biodb.TRACE[2025-04-19 16:07:32.767][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.768][entry.fields$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.770][entry.fields$get] Asked field names are: products.
biodb.TRACE[2025-04-19 16:07:32.771][entry.fields$get] Realnames of fields are: products.
biodb.TRACE[2025-04-19 16:07:32.772][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.773][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2025-04-19 16:07:32.774][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.TRACE[2025-04-19 16:07:32.776][entry.fields$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:32.778][entry.fields$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:32.779][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.780][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2025-04-19 16:07:32.781][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.TRACE[2025-04-19 16:07:32.783][entry.fields$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:07:32.785][entry.fields$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:07:32.786][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.787][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:32.788][self$setPropertyValue] Setting property "parsing.expr" to "smiles.canonical".
biodb.TRACE[2025-04-19 16:07:32.790][entry.fields$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:07:32.792][entry.fields$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:07:32.793][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.794][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "smiles.canonical".
biodb.DEBUG[2025-04-19 16:07:32.795][self$setPropertyValue] Setting property "parsing.expr" to "smiles.isomeric".
biodb.TRACE[2025-04-19 16:07:32.797][entry.fields$get] Asked field names are: substrates.
biodb.TRACE[2025-04-19 16:07:32.799][entry.fields$get] Realnames of fields are: substrates.
biodb.TRACE[2025-04-19 16:07:32.800][entry.fields$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.801][entry.fields$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "aa.seq.location".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "average.mass".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "cas_id".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "catalytic_activity".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "charge".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "chebi_id".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "chemspider_id".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.constructor".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.diameter".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.id".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.length".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.method.protocol".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.col.name".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.gradient".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.flow.rate".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.max".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.min".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom.rt.unit".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "chrom_solvent".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "cofactor".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "comp_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.allowed".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.cas".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.pref".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.syst".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "comp.iupac.name.trad".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "comp_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "comp.super.class".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "composition".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "compound_id".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "ec".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "equation".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "expasy_enzyme_id".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "gene_symbol".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "hmdb_metabolites_id".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "inchi".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "inchikey".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "kegg_compound_id".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "kegg_genes_id".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "logp".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "mass_csv_file_id".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "mass_sqlite_id".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "ms.level".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "msdev".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "msdevtype".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "msprecannot".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "mstype".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "nb.compounds".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "nb.peaks".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_gene_id".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "ncbi_pubchem_comp_id".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "nt.seq.length".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "organism".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "pathway_class".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "peak_attr".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "peak_comp".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "peak_error_ppm".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "peak_formula".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "peak_intensity".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "peak_mass".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "peak_mz".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "peak_mzexp".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "peak_mztheo".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "peak_relative_intensity".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "products".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "smiles.canonical".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "smiles.isomeric".
biodb.DEBUG[2025-04-19 16:07:32.802][self$setPropertyValue] Setting property "parsing.expr" to "substrates".
biodb.TRACE[2025-04-19 16:07:32.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:32.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:32.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.810][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-19 16:07:32.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:32.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:07:32.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:32.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:32.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:32.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:32.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:32.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:32.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:32.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:32.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:32.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:32.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:32.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:07:32.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:07:32.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:07:32.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:07:32.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.857][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:32.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:32.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.864][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:32.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:32.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.872][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:32.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:32.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:32.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:32.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2025-04-19 16:07:32.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2025-04-19 16:07:32.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:32.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:32.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:32.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:32.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.907][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:32.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:32.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.912][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:32.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:32.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.917][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:32.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:32.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:32.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:32.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.927][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:32.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:32.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:32.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:32.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:32.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:32.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:32.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:32.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:32.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:32.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.950][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:32.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:32.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.955][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:32.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:32.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.960][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:32.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:32.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:32.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:32.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:32.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:32.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:32.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:32.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:07:32.978][biodb$getFactory()$createEntryFromCo ...] Accession numbers: KNA00776.
biodb.TRACE[2025-04-19 16:07:32.981][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:32.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:32.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:32.986][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:32.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:32.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:32.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:33.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:33.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.013][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:33.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:33.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:33.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:33.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:33.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:33.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:33.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:33.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:33.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:33.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:33.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:33.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:33.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:33.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.053][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:33.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:33.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.058][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:33.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:33.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.063][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:33.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:33.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:33.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:33.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:33.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:33.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:33.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:33.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.090][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:33.091][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:33.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:33.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:33.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.109][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:33.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:33.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:33.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:33.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:33.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:33.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.123][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:33.124][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:33.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:33.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:33.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:33.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:33.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:33.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:33.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:33.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:33.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.156][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:33.158][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:33.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:33.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:33.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:33.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:33.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:33.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:33.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:33.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:33.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.190][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:33.191][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:33.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.193][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:33.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:33.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.209][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:33.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:33.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.214][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:33.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:33.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.218][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:33.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:33.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.223][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:33.224][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:33.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.228][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:33.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:33.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.242][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:33.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:33.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.247][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:33.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:33.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.252][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:33.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:33.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.257][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:33.258][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:33.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.261][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:33.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:33.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:33.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:33.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:33.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:33.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:33.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:33.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.290][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:33.292][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:33.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.300][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:33.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:33.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:33.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:33.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:33.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:33.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:33.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:33.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.330][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:33.331][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:33.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.333][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:33.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:33.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.349][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:33.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:33.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.353][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:33.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:33.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.358][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:33.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:33.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.363][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:33.364][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:33.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.366][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:33.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:33.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.381][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:33.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:33.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:33.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:33.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.391][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:33.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:33.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.395][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:33.396][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:33.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.400][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:33.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:33.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:07:33.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:07:33.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:07:33.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:07:33.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:07:33.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:07:33.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.428][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:07:33.429][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:07:33.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.431][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:07:33.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:07:33.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:07:33.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:07:33.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:07:33.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:07:33.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:07:33.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:07:33.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.461][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:07:33.462][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:07:33.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.464][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:07:33.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:07:33.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.480][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-19 16:07:33.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:33.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.484][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-19 16:07:33.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:33.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.489][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-19 16:07:33.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:33.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.494][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-19 16:07:33.495][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:33.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.497][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.498][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-19 16:07:33.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:33.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:07:33.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:33.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:07:33.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:33.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:07:33.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:33.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:07:33.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:33.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.531][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:07:33.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:33.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.547][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:33.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:33.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.551][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:33.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:33.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.556][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:33.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:33.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.561][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:33.562][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:33.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.564][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.566][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:33.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:33.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2025-04-19 16:07:33.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2025-04-19 16:07:33.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2025-04-19 16:07:33.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2025-04-19 16:07:33.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.590][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2025-04-19 16:07:33.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2025-04-19 16:07:33.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.595][ef$get] Asked field names are: ms.level.
biodb.TRACE[2025-04-19 16:07:33.596][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2025-04-19 16:07:33.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.level.
biodb.TRACE[2025-04-19 16:07:33.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.level.
biodb.TRACE[2025-04-19 16:07:33.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:33.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:33.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:33.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:33.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:33.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:33.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.628][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:33.630][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:33.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:33.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:33.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.648][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:33.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:33.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.653][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:33.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:33.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.658][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:33.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:33.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.663][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:33.664][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:33.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.667][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:33.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:33.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:33.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:33.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:33.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:33.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:33.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:33.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.704][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:33.705][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:33.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.708][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:33.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:33.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.724][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:33.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:33.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.728][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:33.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:33.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.733][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:33.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:33.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.738][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:33.739][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:33.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.742][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.743][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:33.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:33.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.758][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:07:33.759][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:07:33.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.761][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.768][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-19 16:07:33.769][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:33.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:07:33.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:33.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.781][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.788][ef$get] Asked field names are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:33.789][ef$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2025-04-19 16:07:33.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.798][ef$get] Asked field names are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:33.799][ef$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2025-04-19 16:07:33.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.808][ef$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:33.810][ef$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:07:33.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.818][ef$get] Asked field names are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:33.820][ef$get] Realnames of fields are: chrom.rt.unit.
biodb.TRACE[2025-04-19 16:07:33.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.822][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.828][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:07:33.830][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:07:33.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.832][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.839][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:07:33.840][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:07:33.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.842][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.849][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:07:33.850][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:07:33.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.853][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.862][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:33.863][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:33.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.872][ef$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:33.873][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:33.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.875][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.882][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:33.883][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:07:33.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.891][ef$get] Asked field names are: ms.level.
biodb.TRACE[2025-04-19 16:07:33.893][ef$get] Realnames of fields are: ms.level.
biodb.TRACE[2025-04-19 16:07:33.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.895][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.901][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2025-04-19 16:07:33.903][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2025-04-19 16:07:33.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.905][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.911][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:33.913][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:33.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.915][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.921][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:07:33.923][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:33.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.925][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.932][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:33.933][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:33.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.935][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.942][ef$get] Asked field names are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:33.943][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:33.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.945][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:33.952][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:07:33.953][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:07:33.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:33.956][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:33.968][biodb::testThat]
biodb.INFO [2025-04-19 16:07:33.969][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-04-19 16:07:33.970][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:33.971][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:33.974][private$loadEntries] Creating entries from ids [1]: "KNA00776".
biodb.DEBUG[2025-04-19 16:07:33.976][conn$getEntryContent] Get Mass spectra SQLite entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:33.977][cch$loadFileContent] Trying to load 1 files from cache: [1]: "KNA00776".
biodb.INFO [2025-04-19 16:07:33.979][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.TRACE[2025-04-19 16:07:33.990][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:33.991][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.TRACE[2025-04-19 16:07:34.001][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:34.002][conn$getEntryContent] 0 Mass spectra SQLite entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:34.004][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra SQLite database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/generated/massbank_extract_full.sqlite".
biodb.DEBUG[2025-04-19 16:07:34.005][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:34.006][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2025-04-19 16:07:34.010][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:34.011][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:34.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.013][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.015][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:34.017][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:34.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.019][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.022][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:34.023][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:34.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.025][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.028][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:34.029][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:34.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.031][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.033][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:34.035][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:34.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.039][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:34.040][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:34.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.043][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.045][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:34.046][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:34.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.048][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.050][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:34.052][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:34.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.056][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:34.057][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:34.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.062][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:34.063][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:34.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.065][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.068][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:34.069][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:34.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.073][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:34.075][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:34.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.077][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.079][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:34.080][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:34.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.085][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:34.086][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:34.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.089][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:34.091][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.INFO [2025-04-19 16:07:34.109][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.TRACE[2025-04-19 16:07:34.119][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca/KNA00776.json"
biodb.INFO [2025-04-19 16:07:34.143][biodb::testThat]
biodb.INFO [2025-04-19 16:07:34.144][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-04-19 16:07:34.145][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:34.147][biodb::testThat]
biodb.INFO [2025-04-19 16:07:34.155][biodb::testThat]
biodb.INFO [2025-04-19 16:07:34.157][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-04-19 16:07:34.158][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:34.159][biodb::testThat]
biodb.WARN [2025-04-19 16:07:34.162][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2025-04-19 16:07:34.166][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2025-04-19 16:07:34.177][biodb::testThat]
biodb.INFO [2025-04-19 16:07:34.178][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-04-19 16:07:34.179][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:34.181][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:34.185][private$loadEntries] Creating entries from ids [1]: "KNA00776".
biodb.DEBUG[2025-04-19 16:07:34.186][conn$getEntryContent] Get Mass spectra SQLite entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:34.188][cch$loadFileContent] Trying to load 1 files from cache: [1]: "KNA00776".
biodb.INFO [2025-04-19 16:07:34.189][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.TRACE[2025-04-19 16:07:34.200][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:34.201][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.TRACE[2025-04-19 16:07:34.210][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:34.212][conn$getEntryContent] 0 Mass spectra SQLite entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:34.213][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra SQLite database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/generated/massbank_extract_full.sqlite".
biodb.DEBUG[2025-04-19 16:07:34.214][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:34.215][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2025-04-19 16:07:34.219][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:34.220][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:34.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.224][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:34.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:34.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.228][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.231][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:34.232][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:34.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.234][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.236][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:34.237][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:34.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.240][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.242][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:34.243][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:34.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.247][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:34.248][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:34.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.253][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:34.254][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:34.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.258][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:34.259][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:34.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.262][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.264][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:34.265][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:34.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.269][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:34.270][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:34.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.275][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:34.276][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:34.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.281][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:34.282][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:34.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.286][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:34.288][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:34.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.290][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.292][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:34.293][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:34.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.295][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:34.298][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.INFO [2025-04-19 16:07:34.310][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.TRACE[2025-04-19 16:07:34.320][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca/KNA00776.json"
biodb.INFO [2025-04-19 16:07:34.345][biodb::testThat]
biodb.INFO [2025-04-19 16:07:34.346][biodb::testThat] Running test function  test.getChromCol  (" We can retrieve a list of chromatographic columns. ").
biodb.INFO [2025-04-19 16:07:34.348][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:34.349][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:34.366][self$getQuery] Running query "select distinct "chrom.col.id", "chrom.col.name" from "entries" where ("accession" in ("KNA00776"));".
biodb.INFO [2025-04-19 16:07:34.378][biodb::testThat]
biodb.INFO [2025-04-19 16:07:34.379][biodb::testThat] Running test function  test.searchMsPeaks.rt  (" We can search for (M/Z, RT) couples, separately. ").
biodb.INFO [2025-04-19 16:07:34.380][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:34.381][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:34.384][private$loadEntries] Creating entries from ids [1]: "KNA00776".
biodb.DEBUG[2025-04-19 16:07:34.385][conn$getEntryContent] Get Mass spectra SQLite entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:34.387][cch$loadFileContent] Trying to load 1 files from cache: [1]: "KNA00776".
biodb.INFO [2025-04-19 16:07:34.389][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.TRACE[2025-04-19 16:07:34.399][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:34.401][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.TRACE[2025-04-19 16:07:34.411][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:34.412][conn$getEntryContent] 0 Mass spectra SQLite entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:34.414][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra SQLite database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/generated/massbank_extract_full.sqlite".
biodb.DEBUG[2025-04-19 16:07:34.415][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:34.416][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2025-04-19 16:07:34.427][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:34.428][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:34.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.432][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:34.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:34.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.439][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:34.440][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:34.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.444][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:34.446][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:34.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.448][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.450][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:34.451][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:34.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.456][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:34.457][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:34.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.461][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:34.462][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:34.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.467][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:34.468][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:34.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.472][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:34.474][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:34.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.478][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:34.479][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:34.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.482][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.484][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:34.485][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:34.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.489][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:34.491][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:34.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.495][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:34.496][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:34.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.500][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:34.502][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:34.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.504][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:34.506][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.INFO [2025-04-19 16:07:34.518][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.TRACE[2025-04-19 16:07:34.528][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca/KNA00776.json"
biodb.INFO [2025-04-19 16:07:34.552][biodb::testThat]
biodb.INFO [2025-04-19 16:07:34.553][biodb::testThat] Running test function  test.searchMsPeaks  (" We can search for several M/Z values, separately. ").
biodb.INFO [2025-04-19 16:07:34.554][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:34.555][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:34.567][private$loadEntries] Creating entries from ids [1]: "AU116602".
biodb.DEBUG[2025-04-19 16:07:34.568][conn$getEntryContent] Get Mass spectra SQLite entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:34.570][cch$loadFileContent] Trying to load 1 files from cache: [1]: "AU116602".
biodb.INFO [2025-04-19 16:07:34.571][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.TRACE[2025-04-19 16:07:34.581][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:34.582][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.TRACE[2025-04-19 16:07:34.591][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:34.592][conn$getEntryContent] 0 Mass spectra SQLite entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:34.594][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra SQLite database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/generated/massbank_extract_full.sqlite".
biodb.DEBUG[2025-04-19 16:07:34.595][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:34.596][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2025-04-19 16:07:34.600][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:34.601][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:34.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.603][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.605][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:34.606][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:34.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.612][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:34.613][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:34.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.615][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.617][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:34.619][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:34.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.621][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.623][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:34.624][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:34.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.626][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.628][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:34.630][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:34.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.634][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:34.635][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:34.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.640][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:34.641][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:34.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.643][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.645][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:34.647][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:34.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.651][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:34.652][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:34.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.657][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:34.658][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:34.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.660][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.662][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:34.664][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:34.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.668][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:34.669][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:34.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.674][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:34.675][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:34.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.677][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:34.680][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.INFO [2025-04-19 16:07:34.691][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.TRACE[2025-04-19 16:07:34.700][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca/AU116602.json"
biodb.INFO [2025-04-19 16:07:34.724][biodb::testThat]
biodb.INFO [2025-04-19 16:07:34.725][biodb::testThat] Running test function  test.searchMsPeaks.with.NA.value  (" Search for peaks with N/A value returns no match. ").
biodb.INFO [2025-04-19 16:07:34.726][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:34.727][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:34.730][private$matchingMzWithSpectra] M/Z values to process [1]: "NA"
biodb.DEBUG[2025-04-19 16:07:34.737][function(mz.min, mz.max, mz, mz.tol, mz.tol.unit, rt, rt.unit, rt.tol, rt.tol.exp, chrom.col.ids, precursor, min.rel.int, ms.mode, max.results, ms.level, include.ids)] Found 0 spectra: none
biodb.DEBUG[2025-04-19 16:07:34.752][private$loadEntries] Creating entries from ids [1]: "AU116602".
biodb.DEBUG[2025-04-19 16:07:34.754][conn$getEntryContent] Get Mass spectra SQLite entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:07:34.756][cch$loadFileContent] Trying to load 1 files from cache: [1]: "AU116602".
biodb.INFO [2025-04-19 16:07:34.757][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.TRACE[2025-04-19 16:07:34.767][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.INFO [2025-04-19 16:07:34.768][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.TRACE[2025-04-19 16:07:34.778][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:34.779][conn$getEntryContent] 0 Mass spectra SQLite entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:34.781][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra SQLite database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/generated/massbank_extract_full.sqlite".
biodb.DEBUG[2025-04-19 16:07:34.782][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:34.783][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2025-04-19 16:07:34.786][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:34.788][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:34.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.792][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:34.793][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:34.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.799][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:34.800][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:34.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.804][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:34.806][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:34.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.810][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:34.811][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:34.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.816][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:34.817][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:34.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.819][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.821][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:34.822][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:34.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.825][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.827][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:34.828][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:34.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.832][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:34.834][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:34.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.838][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:34.839][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:34.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.842][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.844][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:34.845][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:34.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.847][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.849][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:34.851][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:34.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.853][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.855][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:34.857][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:34.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.860][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.863][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:34.864][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:34.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.866][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:34.868][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.INFO [2025-04-19 16:07:34.879][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.TRACE[2025-04-19 16:07:34.888][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca/AU116602.json"
biodb.INFO [2025-04-19 16:07:34.911][biodb::testThat]
biodb.INFO [2025-04-19 16:07:34.912][biodb::testThat] Running test function  test.db.copy  (" Database copy works. ").
biodb.INFO [2025-04-19 16:07:34.914][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:07:34.915][biodb::testThat]
biodb.DEBUG[2025-04-19 16:07:34.919][super$initialize] Initialize connector mass.sqlite.1.
biodb.DEBUG[2025-04-19 16:07:34.921][biodb$getFactory()$createConn] Creating new connector mass.sqlite.1 for database class mass.sqlite , with base URL "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/test.db.copy.mass.sqlite.db".
biodb.DEBUG[2025-04-19 16:07:34.924][private$loadEntries] Creating entries from ids [20]: "AU116602, AU116606, AU158001, AU158002, AU200951, AU200952, AU200953, AU325851, AU341051, BS003495, ...".
biodb.DEBUG[2025-04-19 16:07:34.925][conn$getEntryContent] Get Mass spectra SQLite entry content(s) for 20 id(s)...
biodb.TRACE[2025-04-19 16:07:34.927][cch$loadFileContent] Trying to load 20 files from cache: [20]: "AU116602, AU116606, AU158001, AU158002, AU200951, AU200952, AU200953, AU325851, AU341051, BS003495, ...".
biodb.INFO [2025-04-19 16:07:34.929][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.TRACE[2025-04-19 16:07:34.939][cch$loadFileContent] file.exist = [20]: "FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, ...".
biodb.INFO [2025-04-19 16:07:34.941][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.TRACE[2025-04-19 16:07:34.950][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:07:34.951][conn$getEntryContent] 0 Mass spectra SQLite entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:07:34.953][conn$getEntryContent] 20 entry content(s) need to be fetched from Mass spectra SQLite database "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/generated/massbank_extract_full.sqlite".
biodb.DEBUG[2025-04-19 16:07:34.954][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:07:34.955][conn$getEntryContent] 1 chunk(s) to download.
biodb.TRACE[2025-04-19 16:07:34.958][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:34.960][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:34.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.962][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.964][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:34.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:34.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.968][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.971][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:34.972][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:34.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.974][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.977][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:34.978][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:34.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.980][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.982][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:34.984][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:34.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.986][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.988][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:34.990][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:34.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.992][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:34.994][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:34.995][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:34.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:34.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.000][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:35.001][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:35.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.003][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.005][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:35.007][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:35.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.009][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.011][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:35.012][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:35.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.015][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.017][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:35.018][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:35.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.022][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:35.024][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:35.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.026][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.028][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:35.029][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:35.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.034][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:35.035][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:35.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.040][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:35.042][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:35.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.044][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.046][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:35.047][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:35.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.053][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:35.054][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:35.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.056][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.058][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:35.060][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:35.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.064][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:35.065][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:35.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.092][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.094][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.096][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.100][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:35.102][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:35.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.106][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:35.107][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:35.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.112][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:35.113][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:35.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.118][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:35.119][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:35.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.121][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.124][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:35.125][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:35.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.129][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:35.131][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:35.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.133][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.135][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:35.136][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:35.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.141][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:35.142][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:35.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.144][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.147][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:35.149][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:35.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.153][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:35.154][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:35.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.156][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.160][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:35.161][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:35.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.165][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:35.166][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:35.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.171][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:35.172][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:35.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.177][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.178][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.182][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:35.184][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:35.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.186][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.188][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:35.189][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:35.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.192][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.194][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:35.195][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:35.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.200][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:35.201][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:35.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.205][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:35.207][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:35.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.211][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:35.213][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:35.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.217][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:35.218][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:35.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.221][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.223][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:35.224][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:35.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.230][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:35.231][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:35.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.236][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:35.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:35.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.239][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.242][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:35.244][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:35.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.248][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:35.249][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:35.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.254][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:35.255][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:35.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.257][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.259][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.260][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.265][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:35.266][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:35.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.268][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.271][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:35.272][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:35.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.274][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.276][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:35.278][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:35.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.280][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.282][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:35.283][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:35.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.286][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.288][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:35.289][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:35.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.294][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:35.295][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:35.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.297][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.299][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:35.301][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:35.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.303][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.305][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:35.306][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:35.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.309][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.312][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:35.313][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:35.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.315][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.318][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:35.319][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:35.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.321][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.324][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:35.325][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:35.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.328][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.330][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:35.331][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:35.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.333][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.336][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:35.337][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:35.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.339][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.341][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.343][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.345][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.347][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:35.349][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:35.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.353][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:35.354][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:35.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.359][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:35.360][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:35.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.365][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:35.366][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:35.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.371][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:35.372][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:35.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.377][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:35.378][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:35.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.380][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.382][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:35.384][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:35.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.386][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.388][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:35.390][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:35.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.392][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.395][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:35.397][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:35.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.401][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:35.402][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:35.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.408][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:35.409][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:35.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.411][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.413][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:35.415][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:35.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.417][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.419][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:35.420][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:35.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.425][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.426][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.428][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.431][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:35.432][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:35.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.434][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.436][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:35.438][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:35.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.440][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.442][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:35.444][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:35.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.446][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.448][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:35.449][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:35.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.452][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.454][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:35.455][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:35.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.464][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.466][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:35.468][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:35.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.472][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:35.473][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:35.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.478][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:35.479][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:35.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.482][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.485][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:35.486][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:35.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.488][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.490][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:35.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:35.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.494][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.497][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:35.498][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:35.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.502][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:35.504][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:35.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.506][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.508][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:35.509][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:35.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.514][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.515][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.517][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.519][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:35.520][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:35.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.523][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.525][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:35.526][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:35.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.528][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.530][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:35.532][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:35.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.534][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.536][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:35.537][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:35.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.539][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.542][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:35.543][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:35.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.545][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.547][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:35.548][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:35.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.553][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:35.554][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:35.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.556][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.558][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:35.560][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:35.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.562][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.565][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:35.566][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:35.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.571][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:35.572][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:35.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.577][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:35.578][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:35.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.581][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.583][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:35.584][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:35.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.588][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:35.590][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:35.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.592][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.594][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.595][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.600][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:35.601][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:35.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.603][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.605][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:35.607][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:35.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.611][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:35.612][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:35.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.617][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:35.618][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:35.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.620][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.622][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:35.623][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:35.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.626][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.628][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:35.629][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:35.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.634][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:35.635][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:35.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.637][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.639][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:35.641][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:35.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.643][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.646][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:35.647][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:35.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.650][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.652][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:35.657][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:35.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.660][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.664][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:35.665][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:35.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.670][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:35.671][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:35.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.674][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.676][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:35.677][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:35.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.681][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.683][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.685][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.687][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:35.688][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:35.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.691][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.693][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:35.694][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:35.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.696][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.699][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:35.700][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:35.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.704][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:35.706][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:35.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.708][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.710][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:35.712][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:35.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.714][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.716][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:35.717][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:35.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.720][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.722][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:35.723][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:35.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.726][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.728][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:35.729][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:35.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.735][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:35.736][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:35.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.741][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:35.742][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:35.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.744][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.747][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:35.749][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:35.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.751][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.753][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:35.754][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:35.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.756][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.758][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:35.760][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:35.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.764][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.766][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.770][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:35.771][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:35.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.776][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:35.777][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:35.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.781][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:35.783][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:35.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.787][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:35.788][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:35.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.793][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:35.794][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:35.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.798][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:35.800][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:35.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.804][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:35.806][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:35.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.810][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:35.811][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:35.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.817][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:35.818][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:35.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.823][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:35.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:35.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.829][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:35.836][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:35.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.841][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:35.842][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:35.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.845][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.847][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:35.848][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:35.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.852][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.854][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.859][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:35.860][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:35.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.862][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.865][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:35.866][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:35.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.868][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.870][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:35.872][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:35.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.874][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.876][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:35.877][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:35.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.879][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.882][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:35.883][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:35.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.887][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:35.889][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:35.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.893][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:35.894][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:35.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.899][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:35.900][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:35.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.905][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:35.907][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:35.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.911][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:35.912][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:35.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.917][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:35.919][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:35.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.921][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.923][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:35.924][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:35.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.927][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.929][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:35.930][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:35.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.932][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.934][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.936][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:35.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.940][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:35.941][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:35.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.944][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.946][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:35.947][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:35.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.951][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:35.953][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:35.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.955][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.957][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:35.958][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:35.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.960][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.963][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:35.964][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:35.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.966][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.968][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:35.970][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:35.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.972][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.974][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:35.975][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:35.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.978][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.980][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:35.981][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:35.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.984][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.987][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:35.988][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:35.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.992][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:35.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:35.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:35.996][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:35.999][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:36.000][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:36.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.002][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.005][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:36.006][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:36.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.010][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:36.012][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:36.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.015][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.017][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:36.018][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:36.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.023][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:36.024][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:36.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.026][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.029][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:36.030][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:36.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.034][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:36.036][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:36.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.038][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.040][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:36.041][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:36.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.044][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.046][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:36.047][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:36.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.052][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:36.053][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:36.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.055][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.058][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:36.059][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:36.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.061][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.064][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:36.065][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:36.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.070][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:36.072][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:36.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.076][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:36.078][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:36.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.083][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:36.084][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:36.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.089][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:36.090][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:36.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.092][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.094][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:36.096][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:36.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.100][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:36.102][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:36.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.106][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:36.107][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:36.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.112][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:36.113][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:36.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.115][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.118][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:36.119][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:36.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.121][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.123][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:36.125][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:36.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.129][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:36.130][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:36.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.133][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.135][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:36.136][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:36.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.141][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:36.142][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:36.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.144][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.146][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:36.148][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:36.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.150][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.153][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:36.154][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:36.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.159][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:36.160][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:36.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.165][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:36.167][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:36.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.171][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:36.172][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:36.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.175][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.177][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:36.178][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:36.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.182][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:36.184][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:36.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.186][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.188][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:36.189][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:36.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.192][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.194][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:36.195][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:36.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.200][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:36.206][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:36.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.211][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:36.213][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:36.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.217][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:36.218][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:36.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.221][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.223][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:36.224][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:36.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.229][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:36.230][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:36.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.232][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.234][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:36.236][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:36.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.241][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:36.242][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:36.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.244][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.246][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:36.248][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:36.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.250][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.253][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:36.254][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:36.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.258][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:36.260][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:36.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.262][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.264][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:36.265][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:36.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.270][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:36.271][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:36.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.275][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:36.276][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:36.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.279][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.281][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:36.282][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:36.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.286][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:36.287][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:36.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.290][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.292][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:36.293][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:36.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.295][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.297][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:36.298][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:36.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.301][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.303][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:36.304][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:36.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.306][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.308][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:36.309][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:36.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.314][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:36.315][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:36.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.317][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.320][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:36.322][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:36.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.324][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.326][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:36.327][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:36.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.332][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:36.333][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:36.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.338][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:36.339][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:36.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.343][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:36.345][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:36.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.349][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:36.350][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:36.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.355][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:36.356][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:36.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.360][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:36.361][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:36.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.364][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.366][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:36.367][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:36.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.369][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.371][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:36.372][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:36.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.377][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:36.378][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:36.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.380][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.382][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:36.384][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:36.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.386][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.388][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:36.389][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:36.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.392][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.394][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:36.395][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:36.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.400][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:36.402][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:36.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.406][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:36.407][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:36.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.409][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.412][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:36.414][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:36.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.418][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:36.419][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:36.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.423][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:36.425][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:36.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.429][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:36.430][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:36.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.435][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:36.436][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:36.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.440][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:36.441][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:36.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.446][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:36.447][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:36.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.449][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.451][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:36.453][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:36.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.455][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.457][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:36.458][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:36.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.462][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:36.464][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:36.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.466][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.468][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:36.469][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:36.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.474][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:36.475][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:36.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.477][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.480][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:36.481][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:36.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.486][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:36.487][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:36.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.492][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:36.493][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:36.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.498][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:36.499][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:36.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.501][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.503][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:36.505][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:36.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.507][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.509][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:36.510][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:36.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.515][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:36.516][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:36.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.520][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:36.521][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:36.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.524][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.526][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:36.527][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:36.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.531][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:36.533][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:36.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.535][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.537][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:36.538][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:36.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.541][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.543][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:36.544][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:36.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.546][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.549][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:36.550][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:36.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.552][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.554][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:36.555][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:36.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.558][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.567][ef$get] Asked field names are: cas_id.
biodb.TRACE[2025-04-19 16:07:36.568][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-19 16:07:36.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.571][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.573][ef$get] Asked field names are: chebi_id.
biodb.TRACE[2025-04-19 16:07:36.574][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:07:36.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.576][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.579][ef$get] Asked field names are: kegg_compound_id.
biodb.TRACE[2025-04-19 16:07:36.581][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:07:36.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.585][ef$get] Asked field names are: mass_csv_file_id.
biodb.TRACE[2025-04-19 16:07:36.586][ef$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2025-04-19 16:07:36.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.588][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.590][ef$get] Asked field names are: mass_sqlite_id.
biodb.TRACE[2025-04-19 16:07:36.592][ef$get] Realnames of fields are: mass.sqlite.id.
biodb.TRACE[2025-04-19 16:07:36.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.596][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2025-04-19 16:07:36.597][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2025-04-19 16:07:36.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.600][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.602][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:07:36.603][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:07:36.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.607][ef$get] Asked field names are: peak_attr.
biodb.TRACE[2025-04-19 16:07:36.608][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:07:36.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.611][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.613][ef$get] Asked field names are: peak_formula.
biodb.TRACE[2025-04-19 16:07:36.614][ef$get] Realnames of fields are: peak.formula.
biodb.TRACE[2025-04-19 16:07:36.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.618][ef$get] Asked field names are: peak_intensity.
biodb.TRACE[2025-04-19 16:07:36.620][ef$get] Realnames of fields are: peak.intensity.
biodb.TRACE[2025-04-19 16:07:36.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.624][ef$get] Asked field names are: peak_mz.
biodb.TRACE[2025-04-19 16:07:36.625][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:07:36.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.629][ef$get] Asked field names are: peak_mzexp.
biodb.TRACE[2025-04-19 16:07:36.631][ef$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:07:36.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.633][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.635][ef$get] Asked field names are: peak_mztheo.
biodb.TRACE[2025-04-19 16:07:36.636][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:07:36.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:07:36.640][ef$get] Asked field names are: peak_relative_intensity.
biodb.TRACE[2025-04-19 16:07:36.642][ef$get] Realnames of fields are: peak.relative.intensity.
biodb.TRACE[2025-04-19 16:07:36.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:07:36.644][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:07:36.646][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.INFO [2025-04-19 16:07:36.675][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca" for "mass.sqlite-9988c8923fc3287b510843f2d9eb2aca".
biodb.TRACE[2025-04-19 16:07:36.685][private$doSaveContentToFile] Saving to cache [20]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca/AU116602.json, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca/AU116606.json, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca/AU158001.json, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca/AU158002.json, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca/AU200951.json, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca/AU200952.json, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca/AU200953.json, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca/AU325851.json, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca/AU341051.json, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/mass.sqlite-9988c8923fc3287b510843f2d9eb2aca/BS003495.json, ..."
biodb.INFO [2025-04-19 16:07:36.707][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-04-19 16:07:36.709][self$deleteConn] Connector "mass.sqlite" deleted.
biodb.INFO [2025-04-19 16:07:36.710][self$deleteConn] Connector "mass.sqlite.1" deleted.
biodb.DEBUG[2025-04-19 16:07:36.711][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-19 16:07:36.712][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:07:36.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:07:36.714][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:07:36.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 40 | WARN 195 | SKIP 0 | PASS 417 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_long_099_extension.R:51:1'): We can run make on a newly generated extension package. ──
file.exists(file.path(pkgDir, "NAMESPACE")) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
Running make doc inside "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/biodbFoo2LocalRcpp" failed. See output in "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/biodbFoo2LocalRcpp.make.doc.log".
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`()
 3.   └─testthat::expect_true(...) at test_long_099_extension.R:32:5
── Error ('test_long_100_comp.csv.file.R:13:1'): We can use the cache system for a local database. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpCsvFC>`, opt = `<named list>`)
  3.   └─opt$refEntries$getRealEntries()
  4.     └─private$bdb$getFactory()$getEntry(...)
  5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  6.         └─conn$getEntryContent(ids)
  7.           └─cch$saveContentToFile(...)
  8.             └─private$doSaveContentToFile(...)
  9.               └─biodb:::saveContentsToFiles(file.paths, content)
 10.                 └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 11.                   └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 12.                     └─base::cat(cnt, file = f)
 13.                       └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_100_comp.csv.file.R:13:1'): RT unit is defined when there is an RT value. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpCsvFC>`, opt = `<named list>`)
  3.   └─conn$getBiodb()$getFactory()$getEntry(...)
  4.     └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  5.       └─conn$getEntryContent(ids)
  6.         └─cch$saveContentToFile(...)
  7.           └─private$doSaveContentToFile(...)
  8.             └─biodb:::saveContentsToFiles(file.paths, content)
  9.               └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 10.                 └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 11.                   └─base::cat(cnt, file = f)
 12.                     └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_100_comp.csv.file.R:13:1'): We can search for an entry by searchable field ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpCsvFC>`, opt = `<named list>`)
  3.   └─conn$getEntry(id, drop = TRUE)
  4.     └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  6.         └─conn$getEntryContent(ids)
  7.           └─cch$saveContentToFile(...)
  8.             └─private$doSaveContentToFile(...)
  9.               └─biodb:::saveContentsToFiles(file.paths, content)
 10.                 └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 11.                   └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 12.                     └─base::cat(cnt, file = f)
 13.                       └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_100_comp.csv.file.R:13:1'): We can search for an entry by name. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpCsvFC>`, opt = `<named list>`)
  3.   └─conn$getEntry(id, drop = TRUE)
  4.     └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  6.         └─conn$getEntryContent(ids)
  7.           └─cch$saveContentToFile(...)
  8.             └─private$doSaveContentToFile(...)
  9.               └─biodb:::saveContentsToFiles(file.paths, content)
 10.                 └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 11.                   └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 12.                     └─base::cat(cnt, file = f)
 13.                       └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_100_comp.csv.file.R:13:1'): We can load an entry from the database. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpCsvFC>`, opt = `<named list>`)
  3.   └─opt$refEntries$getRealEntry(id)
  4.     └─self$getRealEntries(ids = id)
  5.       └─private$bdb$getFactory()$getEntry(...)
  6.         └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  7.           └─conn$getEntryContent(ids)
  8.             └─cch$saveContentToFile(...)
  9.               └─private$doSaveContentToFile(...)
 10.                 └─biodb:::saveContentsToFiles(file.paths, content)
 11.                   └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 12.                     └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 13.                       └─base::cat(cnt, file = f)
 14.                         └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_100_comp.csv.file.R:13:1'): We can search for a compound ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(db = `<CmpCsvFC>`, opt = `<named list>`)
  3.   └─db$getEntry(id, drop = TRUE)
  4.     └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  6.         └─conn$getEntryContent(ids)
  7.           └─cch$saveContentToFile(...)
  8.             └─private$doSaveContentToFile(...)
  9.               └─biodb:::saveContentsToFiles(file.paths, content)
 10.                 └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 11.                   └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 12.                     └─base::cat(cnt, file = f)
 13.                       └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_100_comp.csv.file.R:13:1'): annotateMzValues() accepts a single vector. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpCsvFC>`, opt = `<named list>`)
  3.   └─conn$getEntry(ids, drop = FALSE)
  4.     └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  6.         └─conn$getEntryContent(ids)
  7.           └─cch$saveContentToFile(...)
  8.             └─private$doSaveContentToFile(...)
  9.               └─biodb:::saveContentsToFiles(file.paths, content)
 10.                 └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 11.                   └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 12.                     └─base::cat(cnt, file = f)
 13.                       └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_100_comp.csv.file.R:13:1'): ppm tolerance works in annotateMzValues() ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpCsvFC>`, opt = `<named list>`)
  3.   └─conn$getEntry(ids, drop = FALSE)
  4.     └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  6.         └─conn$getEntryContent(ids)
  7.           └─cch$saveContentToFile(...)
  8.             └─private$doSaveContentToFile(...)
  9.               └─biodb:::saveContentsToFiles(file.paths, content)
 10.                 └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 11.                   └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 12.                     └─base::cat(cnt, file = f)
 13.                       └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_100_comp.csv.file.R:13:1'): Input data frame is not modified by annotateMzValues() ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpCsvFC>`, opt = `<named list>`)
  3.   └─conn$getEntry(ids, drop = FALSE)
  4.     └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  6.         └─conn$getEntryContent(ids)
  7.           └─cch$saveContentToFile(...)
  8.             └─private$doSaveContentToFile(...)
  9.               └─biodb:::saveContentsToFiles(file.paths, content)
 10.                 └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 11.                   └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 12.                     └─base::cat(cnt, file = f)
 13.                       └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_100_comp.csv.file.R:13:1'): annotateMzValues() works correctly with real values. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpCsvFC>`, opt = `<named list>`)
  3.   └─conn$getEntry(ids, drop = FALSE)
  4.     └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  6.         └─conn$getEntryContent(ids)
  7.           └─cch$saveContentToFile(...)
  8.             └─private$doSaveContentToFile(...)
  9.               └─biodb:::saveContentsToFiles(file.paths, content)
 10.                 └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 11.                   └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 12.                     └─base::cat(cnt, file = f)
 13.                       └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_100_comp.csv.file.R:13:1'): Additional fields are accepted in annotateMzValues() ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpCsvFC>`, opt = `<named list>`)
  3.   └─conn$getEntry(ids, drop = FALSE)
  4.     └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  6.         └─conn$getEntryContent(ids)
  7.           └─cch$saveContentToFile(...)
  8.             └─private$doSaveContentToFile(...)
  9.               └─biodb:::saveContentsToFiles(file.paths, content)
 10.                 └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 11.                   └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 12.                     └─base::cat(cnt, file = f)
 13.                       └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_100_comp.csv.file.R:13:1'): Database copy works. ──────────
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpCsvFC>`)
  3.   └─biodb$copyDb(conn.from = conn, conn.t = conn.2)
  4.     └─conn.from$getEntry(ids)
  5.       └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  6.         └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  7.           └─conn$getEntryContent(ids)
  8.             └─cch$saveContentToFile(...)
  9.               └─private$doSaveContentToFile(...)
 10.                 └─biodb:::saveContentsToFiles(file.paths, content)
 11.                   └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 12.                     └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 13.                       └─base::cat(cnt, file = f)
 14.                         └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_110_comp.sqlite.R:18:1'): We can use the cache system for a local database. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpSqltC>`, opt = `<named list>`)
  3.   └─opt$refEntries$getRealEntries()
  4.     └─private$bdb$getFactory()$getEntry(...)
  5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  6.         └─conn$getEntryContent(ids)
  7.           └─cch$saveContentToFile(...)
  8.             └─private$doSaveContentToFile(...)
  9.               └─biodb:::saveContentsToFiles(file.paths, content)
 10.                 └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 11.                   └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 12.                     └─base::cat(cnt, file = f)
 13.                       └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_110_comp.sqlite.R:18:1'): RT unit is defined when there is an RT value. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpSqltC>`, opt = `<named list>`)
  3.   └─conn$getBiodb()$getFactory()$getEntry(...)
  4.     └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  5.       └─conn$getEntryContent(ids)
  6.         └─cch$saveContentToFile(...)
  7.           └─private$doSaveContentToFile(...)
  8.             └─biodb:::saveContentsToFiles(file.paths, content)
  9.               └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 10.                 └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 11.                   └─base::cat(cnt, file = f)
 12.                     └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_110_comp.sqlite.R:18:1'): We can search for an entry by searchable field ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpSqltC>`, opt = `<named list>`)
  3.   └─conn$getEntry(id, drop = TRUE)
  4.     └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  6.         └─conn$getEntryContent(ids)
  7.           └─cch$saveContentToFile(...)
  8.             └─private$doSaveContentToFile(...)
  9.               └─biodb:::saveContentsToFiles(file.paths, content)
 10.                 └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 11.                   └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 12.                     └─base::cat(cnt, file = f)
 13.                       └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_110_comp.sqlite.R:18:1'): We can search for an entry by name. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpSqltC>`, opt = `<named list>`)
  3.   └─conn$getEntry(id, drop = TRUE)
  4.     └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  6.         └─conn$getEntryContent(ids)
  7.           └─cch$saveContentToFile(...)
  8.             └─private$doSaveContentToFile(...)
  9.               └─biodb:::saveContentsToFiles(file.paths, content)
 10.                 └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 11.                   └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 12.                     └─base::cat(cnt, file = f)
 13.                       └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_110_comp.sqlite.R:18:1'): We can load an entry from the database. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpSqltC>`, opt = `<named list>`)
  3.   └─opt$refEntries$getRealEntry(id)
  4.     └─self$getRealEntries(ids = id)
  5.       └─private$bdb$getFactory()$getEntry(...)
  6.         └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  7.           └─conn$getEntryContent(ids)
  8.             └─cch$saveContentToFile(...)
  9.               └─private$doSaveContentToFile(...)
 10.                 └─biodb:::saveContentsToFiles(file.paths, content)
 11.                   └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 12.                     └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 13.                       └─base::cat(cnt, file = f)
 14.                         └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_110_comp.sqlite.R:18:1'): We can search for a compound ────
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(db = `<CmpSqltC>`, opt = `<named list>`)
  3.   └─db$getEntry(id, drop = TRUE)
  4.     └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  6.         └─conn$getEntryContent(ids)
  7.           └─cch$saveContentToFile(...)
  8.             └─private$doSaveContentToFile(...)
  9.               └─biodb:::saveContentsToFiles(file.paths, content)
 10.                 └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 11.                   └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 12.                     └─base::cat(cnt, file = f)
 13.                       └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_110_comp.sqlite.R:18:1'): annotateMzValues() accepts a single vector. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpSqltC>`, opt = `<named list>`)
  3.   └─conn$getEntry(ids, drop = FALSE)
  4.     └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  6.         └─conn$getEntryContent(ids)
  7.           └─cch$saveContentToFile(...)
  8.             └─private$doSaveContentToFile(...)
  9.               └─biodb:::saveContentsToFiles(file.paths, content)
 10.                 └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 11.                   └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 12.                     └─base::cat(cnt, file = f)
 13.                       └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_110_comp.sqlite.R:18:1'): ppm tolerance works in annotateMzValues() ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpSqltC>`, opt = `<named list>`)
  3.   └─conn$getEntry(ids, drop = FALSE)
  4.     └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  6.         └─conn$getEntryContent(ids)
  7.           └─cch$saveContentToFile(...)
  8.             └─private$doSaveContentToFile(...)
  9.               └─biodb:::saveContentsToFiles(file.paths, content)
 10.                 └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 11.                   └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 12.                     └─base::cat(cnt, file = f)
 13.                       └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_110_comp.sqlite.R:18:1'): Input data frame is not modified by annotateMzValues() ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpSqltC>`, opt = `<named list>`)
  3.   └─conn$getEntry(ids, drop = FALSE)
  4.     └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  6.         └─conn$getEntryContent(ids)
  7.           └─cch$saveContentToFile(...)
  8.             └─private$doSaveContentToFile(...)
  9.               └─biodb:::saveContentsToFiles(file.paths, content)
 10.                 └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 11.                   └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 12.                     └─base::cat(cnt, file = f)
 13.                       └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_110_comp.sqlite.R:18:1'): annotateMzValues() works correctly with real values. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpSqltC>`, opt = `<named list>`)
  3.   └─conn$getEntry(ids, drop = FALSE)
  4.     └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  6.         └─conn$getEntryContent(ids)
  7.           └─cch$saveContentToFile(...)
  8.             └─private$doSaveContentToFile(...)
  9.               └─biodb:::saveContentsToFiles(file.paths, content)
 10.                 └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 11.                   └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 12.                     └─base::cat(cnt, file = f)
 13.                       └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_110_comp.sqlite.R:18:1'): Additional fields are accepted in annotateMzValues() ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpSqltC>`, opt = `<named list>`)
  3.   └─conn$getEntry(ids, drop = FALSE)
  4.     └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  6.         └─conn$getEntryContent(ids)
  7.           └─cch$saveContentToFile(...)
  8.             └─private$doSaveContentToFile(...)
  9.               └─biodb:::saveContentsToFiles(file.paths, content)
 10.                 └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 11.                   └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 12.                     └─base::cat(cnt, file = f)
 13.                       └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_110_comp.sqlite.R:18:1'): Database copy works. ────────────
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<CmpSqltC>`)
  3.   └─biodb$copyDb(conn.from = conn, conn.t = conn.2)
  4.     └─conn.from$getEntry(ids)
  5.       └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  6.         └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  7.           └─conn$getEntryContent(ids)
  8.             └─cch$saveContentToFile(...)
  9.               └─private$doSaveContentToFile(...)
 10.                 └─biodb:::saveContentsToFiles(file.paths, content)
 11.                   └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 12.                     └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 13.                       └─base::cat(cnt, file = f)
 14.                         └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_120_mass.csv.file.R:158:1'): We can use the cache system for a local database. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<MssCsvFC>`, opt = `<named list>`)
  3.   └─opt$refEntries$getRealEntries()
  4.     └─private$bdb$getFactory()$getEntry(...)
  5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  6.         └─conn$getEntryContent(ids)
  7.           └─cch$saveContentToFile(...)
  8.             └─private$doSaveContentToFile(...)
  9.               └─biodb:::saveContentsToFiles(file.paths, content)
 10.                 └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 11.                   └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 12.                     └─base::cat(cnt, file = f)
 13.                       └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_120_mass.csv.file.R:158:1'): RT unit is defined when there is an RT value. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<MssCsvFC>`, opt = `<named list>`)
  3.   └─conn$getBiodb()$getFactory()$getEntry(...)
  4.     └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  5.       └─conn$getEntryContent(ids)
  6.         └─cch$saveContentToFile(...)
  7.           └─private$doSaveContentToFile(...)
  8.             └─biodb:::saveContentsToFiles(file.paths, content)
  9.               └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 10.                 └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 11.                   └─base::cat(cnt, file = f)
 12.                     └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_120_mass.csv.file.R:158:1'): We can load an entry from the database. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<MssCsvFC>`, opt = `<named list>`)
  3.   └─opt$refEntries$getRealEntry(id)
  4.     └─self$getRealEntries(ids = id)
  5.       └─private$bdb$getFactory()$getEntry(...)
  6.         └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  7.           └─conn$getEntryContent(ids)
  8.             └─cch$saveContentToFile(...)
  9.               └─private$doSaveContentToFile(...)
 10.                 └─biodb:::saveContentsToFiles(file.paths, content)
 11.                   └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 12.                     └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 13.                       └─base::cat(cnt, file = f)
 14.                         └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_120_mass.csv.file.R:158:1'): We can search for (M/Z, RT) couples, separately. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<MssCsvFC>`, opt = `<named list>`)
  3.   └─conn$getBiodb()$getFactory()$getEntry(conn$getId(), ids[[1]])
  4.     └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  5.       └─conn$getEntryContent(ids)
  6.         └─cch$saveContentToFile(...)
  7.           └─private$doSaveContentToFile(...)
  8.             └─biodb:::saveContentsToFiles(file.paths, content)
  9.               └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 10.                 └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 11.                   └─base::cat(cnt, file = f)
 12.                     └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_120_mass.csv.file.R:158:1'): We can search for several M/Z values, separately. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(db = `<MssCsvFC>`)
  3.   └─db$getMzValues(ms.mode = mode, max.results = 3)
  4.     └─private$doGetMzValues(...)
  5.       └─self$getMatchingMzField()
  6.         └─self$getEntry(id)
  7.           └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  8.             └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  9.               └─conn$getEntryContent(ids)
 10.                 └─cch$saveContentToFile(...)
 11.                   └─private$doSaveContentToFile(...)
 12.                     └─biodb:::saveContentsToFiles(file.paths, content)
 13.                       └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 14.                         └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 15.                           └─base::cat(cnt, file = f)
 16.                             └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_120_mass.csv.file.R:158:1'): Search for peaks with N/A value returns no match. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(db = `<MssCsvFC>`)
  3.   └─db$getMzValues(ms.mode = mode, max.results = 3)
  4.     └─private$doGetMzValues(...)
  5.       └─self$getMatchingMzField()
  6.         └─self$getEntry(id)
  7.           └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  8.             └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  9.               └─conn$getEntryContent(ids)
 10.                 └─cch$saveContentToFile(...)
 11.                   └─private$doSaveContentToFile(...)
 12.                     └─biodb:::saveContentsToFiles(file.paths, content)
 13.                       └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 14.                         └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 15.                           └─base::cat(cnt, file = f)
 16.                             └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_120_mass.csv.file.R:158:1'): Database copy works. ─────────
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<MssCsvFC>`)
  3.   └─biodb$copyDb(conn.from = conn, conn.t = conn.2)
  4.     └─conn.from$getEntry(ids)
  5.       └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  6.         └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  7.           └─conn$getEntryContent(ids)
  8.             └─cch$saveContentToFile(...)
  9.               └─private$doSaveContentToFile(...)
 10.                 └─biodb:::saveContentsToFiles(file.paths, content)
 11.                   └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 12.                     └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 13.                       └─base::cat(cnt, file = f)
 14.                         └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_120_mass.csv.file.R:163:1'): M/Z match output contains all columns of database. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(db = `<MssCsvFC>`)
  3.   └─db$getEntry(db$getEntryIds()) at test_long_120_mass.csv.file.R:14:5
  4.     └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  6.         └─conn$getEntryContent(ids)
  7.           └─cch$saveContentToFile(...)
  8.             └─private$doSaveContentToFile(...)
  9.               └─biodb:::saveContentsToFiles(file.paths, content)
 10.                 └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 11.                   └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 12.                     └─base::cat(cnt, file = f)
 13.                       └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_130_mass.sqlite.R:18:1'): We can use the cache system for a local database. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<MssSqltC>`, opt = `<named list>`)
  3.   └─opt$refEntries$getRealEntries()
  4.     └─private$bdb$getFactory()$getEntry(...)
  5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  6.         └─conn$getEntryContent(ids)
  7.           └─cch$saveContentToFile(...)
  8.             └─private$doSaveContentToFile(...)
  9.               └─biodb:::saveContentsToFiles(file.paths, content)
 10.                 └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 11.                   └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 12.                     └─base::cat(cnt, file = f)
 13.                       └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_130_mass.sqlite.R:18:1'): RT unit is defined when there is an RT value. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<MssSqltC>`, opt = `<named list>`)
  3.   └─conn$getBiodb()$getFactory()$getEntry(...)
  4.     └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  5.       └─conn$getEntryContent(ids)
  6.         └─cch$saveContentToFile(...)
  7.           └─private$doSaveContentToFile(...)
  8.             └─biodb:::saveContentsToFiles(file.paths, content)
  9.               └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 10.                 └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 11.                   └─base::cat(cnt, file = f)
 12.                     └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_130_mass.sqlite.R:18:1'): We can load an entry from the database. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<MssSqltC>`, opt = `<named list>`)
  3.   └─opt$refEntries$getRealEntry(id)
  4.     └─self$getRealEntries(ids = id)
  5.       └─private$bdb$getFactory()$getEntry(...)
  6.         └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  7.           └─conn$getEntryContent(ids)
  8.             └─cch$saveContentToFile(...)
  9.               └─private$doSaveContentToFile(...)
 10.                 └─biodb:::saveContentsToFiles(file.paths, content)
 11.                   └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 12.                     └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 13.                       └─base::cat(cnt, file = f)
 14.                         └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_130_mass.sqlite.R:18:1'): We can search for (M/Z, RT) couples, separately. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<MssSqltC>`, opt = `<named list>`)
  3.   └─conn$getBiodb()$getFactory()$getEntry(conn$getId(), ids[[1]])
  4.     └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  5.       └─conn$getEntryContent(ids)
  6.         └─cch$saveContentToFile(...)
  7.           └─private$doSaveContentToFile(...)
  8.             └─biodb:::saveContentsToFiles(file.paths, content)
  9.               └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 10.                 └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 11.                   └─base::cat(cnt, file = f)
 12.                     └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_130_mass.sqlite.R:18:1'): We can search for several M/Z values, separately. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(db = `<MssSqltC>`)
  3.   └─db$getMzValues(ms.mode = mode, max.results = 3)
  4.     └─private$doGetMzValues(...)
  5.       └─self$getMatchingMzField()
  6.         └─self$getEntry(id)
  7.           └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  8.             └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  9.               └─conn$getEntryContent(ids)
 10.                 └─cch$saveContentToFile(...)
 11.                   └─private$doSaveContentToFile(...)
 12.                     └─biodb:::saveContentsToFiles(file.paths, content)
 13.                       └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 14.                         └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 15.                           └─base::cat(cnt, file = f)
 16.                             └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_130_mass.sqlite.R:18:1'): Search for peaks with N/A value returns no match. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(db = `<MssSqltC>`)
  3.   └─db$getMzValues(ms.mode = mode, max.results = 3)
  4.     └─private$doGetMzValues(...)
  5.       └─self$getMatchingMzField()
  6.         └─self$getEntry(id)
  7.           └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  8.             └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  9.               └─conn$getEntryContent(ids)
 10.                 └─cch$saveContentToFile(...)
 11.                   └─private$doSaveContentToFile(...)
 12.                     └─biodb:::saveContentsToFiles(file.paths, content)
 13.                       └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 14.                         └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 15.                           └─base::cat(cnt, file = f)
 16.                             └─base::file(file, ifelse(append, "a", "w"))
── Error ('test_long_130_mass.sqlite.R:18:1'): Database copy works. ────────────
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<MssSqltC>`)
  3.   └─biodb$copyDb(conn.from = conn, conn.t = conn.2)
  4.     └─conn.from$getEntry(ids)
  5.       └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
  6.         └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
  7.           └─conn$getEntryContent(ids)
  8.             └─cch$saveContentToFile(...)
  9.               └─private$doSaveContentToFile(...)
 10.                 └─biodb:::saveContentsToFiles(file.paths, content)
 11.                   └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 12.                     └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 13.                       └─base::cat(cnt, file = f)
 14.                         └─base::file(file, ifelse(append, "a", "w"))

[ FAIL 40 | WARN 195 | SKIP 0 | PASS 417 ]
Error: Test failures
Execution halted

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodb_1.16.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck'
* using R version 4.5.0 RC (2025-04-04 r88126 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'biodb/DESCRIPTION' ... OK
* this is package 'biodb' version '1.16.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .gitlab-ci.yml
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'biodb' can be installed ... WARNING
Found the following significant warnings:
  closeMatchPpm.cpp:251:9: warning: 'void free(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
See 'E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/00install.out' for details.
* used C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) BiodbMain.Rd:101: Lost braces
   101 | Closes \\code{BiodbMain} instance. Call this method when you are done with
       |              ^
checkRd: (-1) BiodbMain.Rd:102: Lost braces
   102 | your \\code{BiodbMain} instance.
       |            ^
checkRd: (-1) BiodbMain.Rd:124: Lost braces
   124 | \\code{BiodbMain} (databases, fields or configuration keys).}
       |       ^
checkRd: (-1) BiodbMain.Rd:138: Lost braces
   138 | Returns the single instance of the \\code{BiodbConfig} class.
       |                                          ^
checkRd: (-1) BiodbMain.Rd:144: Lost braces
   144 | The instance of the \\code{BiodbConfig} class attached to
       |                           ^
checkRd: (-1) BiodbMain.Rd:166: Lost braces
   166 | Returns the single instance of the \\code{BiodbDbsInfo} class.
       |                                          ^
checkRd: (-1) BiodbMain.Rd:172: Lost braces
   172 | The instance of the \\code{BiodbDbsInfo} class attached to
       |                           ^
checkRd: (-1) BiodbMain.Rd:180: Lost braces
   180 | Returns the single instance of the \\code{BiodbEntryFields} class.
       |                                          ^
checkRd: (-1) BiodbMain.Rd:186: Lost braces
   186 | The instance of the \\code{BiodbEntryFields} class
       |                           ^
checkRd: (-1) BiodbMain.Rd:194: Lost braces
   194 | Returns the single instance of the \\code{BiodbFactory} class.
       |                                          ^
checkRd: (-1) BiodbMain.Rd:200: Lost braces
   200 | The instance of the \\code{BiodbFactory} class attached to
       |                           ^
checkRd: (-1) BiodbMain.Rd:208: Lost braces
   208 | Returns the single instance of the \\code{BiodbRequestScheduler}
       |                                          ^
checkRd: (-1) BiodbMain.Rd:215: Lost braces
   215 | The instance of the \\code{BiodbRequestScheduler} class
       |                           ^
checkRd: (-1) BiodbMain.Rd:291: Lost braces
   291 | \item{\code{entries}}{A list of \\code{BiodbEntry} instances.}
       |                                       ^
checkRd: (-1) BiodbMain.Rd:295: Lost braces
   295 | \item{\code{flatten}}{If set to \\code{TRUE} and the field has a cardinality
       |                                       ^
checkRd: (-1) BiodbMain.Rd:299: Lost braces
   299 | \item{\code{compute}}{If set to \\code{TRUE}, computable fields will be
       |                                       ^
checkRd: (-1) BiodbMain.Rd:312: Lost braces
   312 | \\code{TRUE}, otherwise a list.
       |       ^
checkRd: (-1) BiodbMain.Rd:320: Lost braces
   320 | (\\code{BiodbEntry} objects) into a data frame.
       |        ^
checkRd: (-1) BiodbMain.Rd:341: Lost braces
   341 | \item{\code{entries}}{A list of \\code{BiodbEntry} instances or a list of list of
       |                                       ^
checkRd: (-1) BiodbMain.Rd:342: Lost braces
   342 | \\code{BiodbEntry} instances.}
       |       ^
checkRd: (-1) BiodbMain.Rd:344: Lost braces
   344 | \item{\code{only.atomic}}{If set to \\code{TRUE}, output only atomic fields, i.e.:
       |                                           ^
checkRd: (-1) BiodbMain.Rd:348: Lost braces
   348 | \item{\code{null.to.na}}{If set to \\code{TRUE}, each \\code{NULL} entry in the
       |                                          ^
checkRd: (-1) BiodbMain.Rd:348: Lost braces
   348 | \item{\code{null.to.na}}{If set to \\code{TRUE}, each \\code{NULL} entry in the
       |                                                             ^
checkRd: (-1) BiodbMain.Rd:351: Lost braces
   351 | \item{\code{compute}}{If set to \\code{TRUE}, computable fields will be output.}
       |                                       ^
checkRd: (-1) BiodbMain.Rd:360: Lost braces
   360 | \item{\code{drop}}{If set to \\code{TRUE} and the resulting data frame has only one
       |                                    ^
checkRd: (-1) BiodbMain.Rd:365: Lost braces
   365 | \item{\code{flatten}}{If set to \\code{TRUE}, then each field with a cardinality
       |                                       ^
checkRd: (-1) BiodbMain.Rd:467: Lost braces
   467 | Converts a list of \\code{BiodbEntry} objects into JSON. Returns a vector of
       |                          ^
checkRd: (-1) BiodbMain.Rd:476: Lost braces
   476 | \item{\code{entries}}{A list of \\code{BiodbEntry} instances. It may contain NULL
       |                                       ^
checkRd: (-1) BiodbMain.Rd:479: Lost braces
   479 | \item{\code{compute}}{If set to \\code{TRUE}, computable fields will added to JSON
       |                                       ^
checkRd: (-1) BiodbMain.Rd:595: Lost braces
   595 | \item{\code{entries}}{A list of \\code{BiodbEntry} instances. It may contain NULL
       |                                       ^
checkRd: (-1) BiodbMain.Rd:617: Lost braces
   617 | \item{\code{entries}}{A list of \\code{BiodbEntry} instances. It may contain NULL
       |                                       ^
checkRd: (-1) BiodbMain.Rd:623: Lost braces
   623 | \item{\code{compute}}{If set to \\code{TRUE}, computable fields will be saved too.}
       |                                       ^
checkRd: (-1) BiodbMain.Rd:649: Lost braces
   649 | \\code{NULL}, copy the whole database.}
       |       ^
checkRd: (-1) BiodbMain.Rd:675: Lost braces
   675 | method is \\code{BiodbEntryField :isVector()}."
       |                 ^
checkRd: (-1) BiodbPersistentCache.Rd:120: Lost braces
   120 | \item{\code{conn}}{If not \\code{NULL}, checks if the cache system is readable for
       |                                 ^
checkRd: (-1) BiodbPersistentCache.Rd:126: Lost braces
   126 | \\code{TRUE} if the cache system is readable,
       |       ^
checkRd: (-1) BiodbPersistentCache.Rd:127: Lost braces
   127 | \\code{FALSE} otherwise.
       |       ^
checkRd: (-1) BiodbPersistentCache.Rd:142: Lost braces
   142 | \item{\code{conn}}{If not \\code{NULL}, checks if the cache system is writable for
       |                                 ^
checkRd: (-1) BiodbPersistentCache.Rd:148: Lost braces
   148 | \\code{TRUE} if the cache system is writable,
       |       ^
checkRd: (-1) BiodbPersistentCache.Rd:149: Lost braces
   149 | \\code{FALSE} otherwise.
       |       ^
checkRd: (-1) BiodbPersistentCache.Rd:230: Lost braces
   230 | A character vector, the same size as \\code{names},
       |                                            ^
checkRd: (-1) BiodbPersistentCache.Rd:276: Lost braces
   276 | A logical vector, the same size as \\code{name}, with \\code{TRUE}
       |                                          ^
checkRd: (-1) BiodbPersistentCache.Rd:276: Lost braces
   276 | A logical vector, the same size as \\code{name}, with \\code{TRUE}
       |                                                             ^
checkRd: (-1) BiodbPersistentCache.Rd:277: Lost braces
   277 | value if the file exists in the cache, or \\code{FALSE} otherwise.
       |                                                 ^
checkRd: (-1) BiodbPersistentCache.Rd:302: Lost braces
   302 | A logical vector, the same size as \\code{name}, with \\code{TRUE}
       |                                          ^
checkRd: (-1) BiodbPersistentCache.Rd:302: Lost braces
   302 | A logical vector, the same size as \\code{name}, with \\code{TRUE}
       |                                                             ^
checkRd: (-1) BiodbPersistentCache.Rd:303: Lost braces
   303 | value if the file exists in the cache, or \\code{FALSE} otherwise.
       |                                                 ^
checkRd: (-1) BiodbPersistentCache.Rd:325: Lost braces
   325 | A logical vector, the same size as \\code{name}, with
       |                                          ^
checkRd: (-1) BiodbPersistentCache.Rd:326: Lost braces
   326 | \\code{TRUE} value if the marker file exists in the cache, or \\code{FALSE}
       |       ^
checkRd: (-1) BiodbPersistentCache.Rd:326: Lost braces
   326 | \\code{TRUE} value if the marker file exists in the cache, or \\code{FALSE}
       |                                                                     ^
checkRd: (-1) BiodbPersistentCache.Rd:351: Lost braces
   351 | A logical vector, the same size as \\code{name}, with
       |                                          ^
checkRd: (-1) BiodbPersistentCache.Rd:352: Lost braces
   352 | \\code{TRUE} value if the marker file exists in the cache, or \\code{FALSE}
       |       ^
checkRd: (-1) BiodbPersistentCache.Rd:352: Lost braces
   352 | \\code{TRUE} value if the marker file exists in the cache, or \\code{FALSE}
       |                                                                     ^
checkRd: (-1) BiodbPersistentCache.Rd:428: Lost braces
   428 | \item{\code{output.vector}}{If set to \\code{TRUE}, force output to be a
       |                                             ^
checkRd: (-1) BiodbPersistentCache.Rd:429: Lost braces
   429 | \\code{vector} instead of a \\code{list}. Where the list contains a
       |       ^
checkRd: (-1) BiodbPersistentCache.Rd:429: Lost braces
   429 | \\code{vector} instead of a \\code{list}. Where the list contains a
       |                                   ^
checkRd: (-1) BiodbPersistentCache.Rd:430: Lost braces
   430 | \\code{NULL}, the \\code{vector} will contain an \\code{NA} value.}
       |       ^
checkRd: (-1) BiodbPersistentCache.Rd:430: Lost braces
   430 | \\code{NULL}, the \\code{vector} will contain an \\code{NA} value.}
       |                         ^
checkRd: (-1) BiodbPersistentCache.Rd:430: Lost braces
   430 | \\code{NULL}, the \\code{vector} will contain an \\code{NA} value.}
       |                                                        ^
checkRd: (-1) BiodbPersistentCache.Rd:435: Lost braces
   435 | A list (or a vector if \\code{output.vector} is set to
       |                              ^
checkRd: (-1) BiodbPersistentCache.Rd:436: Lost braces
   436 | \\code{TRUE}), the same size as \\code{name}, containing the contents of the
       |       ^
checkRd: (-1) BiodbPersistentCache.Rd:436: Lost braces
   436 | \\code{TRUE}), the same size as \\code{name}, containing the contents of the
       |                                       ^
checkRd: (-1) BiodbPersistentCache.Rd:437: Lost braces
   437 | files. If some file does not exist, a \\code{NULL} value is inserted inside
       |                                             ^
checkRd: (-1) BiodbPersistentCache.Rd:454: Lost braces
   454 | files. It must have the same length as \\code{name}.}
       |                                              ^
checkRd: (-1) BiodbPersistentCache.Rd:667: Lost braces
   667 | \item{\code{extract.name}}{If set to \\code{TRUE}, instead of returning the file
       |                                            ^
checkRd: (-1) BiodbPersistentCache.Rd:671: Lost braces
   671 | \item{\code{full.path}}{If set to \\code{TRUE}, returns full path for files.}
       |                                         ^
checkRd: (-1) BiodbPersistentCache.Rd:677: Lost braces
   677 | \\code{extract.name} is set to \\code{TRUE}.
       |       ^
checkRd: (-1) BiodbPersistentCache.Rd:677: Lost braces
   677 | \\code{extract.name} is set to \\code{TRUE}.
       |                                      ^
checkRd: (-1) BiodbPersistentCache.Rd:695: Lost braces
   695 | \\code{BiodbConfig :isEnabled('cache.system')}.
       |       ^
checkRd: (-1) BiodbPersistentCache.Rd:706: Lost braces
   706 | \\code{BiodbConfig :enable('cache.system')}.
       |       ^
checkRd: (-1) BiodbPersistentCache.Rd:717: Lost braces
   717 | \\code{BiodbConfig :disable('cache.system')}.
       |       ^
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking files in 'vignettes' ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in 'longtests' ... OK
* checking tests in 'longtests' ...
  Running 'testthat.R'
 ERROR
Running the tests in 'longtests/testthat.R' failed.
Last 13 lines of output:
    4.     └─conn.from$getEntry(ids)
    5.       └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
    6.         └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
    7.           └─conn$getEntryContent(ids)
    8.             └─cch$saveContentToFile(...)
    9.               └─private$doSaveContentToFile(...)
   10.                 └─biodb:::saveContentsToFiles(file.paths, content)
   11.                   └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
   12.                     └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
   13.                       └─base::cat(cnt, file = f)
   14.                         └─base::file(file, ifelse(append, "a", "w"))
  
  [ FAIL 40 | WARN 195 | SKIP 0 | PASS 417 ]
  Error: Test failures
  Execution halted
* DONE

Status: 1 ERROR, 1 WARNING, 2 NOTEs
See
  'E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/00check.log'
for details.

Installation output

biodb.Rcheck/00install.out

* installing *source* package 'biodb' ...
** this is package 'biodb' version '1.16.0'
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c closeMatchPpm.cpp -o closeMatchPpm.o
closeMatchPpm.cpp: In function 'Rcpp::List closeMatchPpm(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::IntegerVector, int, double, double)':
closeMatchPpm.cpp:251:9: warning: 'void free(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
  251 |     free(pidxS);
      |     ~~~~^~~~~~~
closeMatchPpm.cpp:238:50: note: returned from 'void* operator new [](std::size_t)'
  238 |     tIdxStruct *pidxS = new tIdxStruct[x.length()];
      |                                                  ^
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c test-100-ms_matching.cpp -o test-100-ms_matching.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -s -static-libgcc -o biodb.dll tmp.def RcppExports.o closeMatchPpm.o test-100-ms_matching.o test-runner.o -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodb.Rcheck/00LOCK-biodb/00new/biodb/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodb)