Multiple platform build/check report for BioC 3.21 - BUILD results for scTensor on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six"	4831
palomino7	Windows Server 2022 Datacenter	x64	4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six"	4573
lconway	macOS 12.7.1 Monterey	x86_64	4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six"	4599
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six"	4553
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4570
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for scTensor on kjohnson3

To the developers/maintainers of the scTensor package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scTensor.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: scTensor

Version: 2.18.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scTensor

StartedAt: 2025-04-17 17:37:25 -0400 (Thu, 17 Apr 2025)

EndedAt: 2025-04-17 17:38:21 -0400 (Thu, 17 Apr 2025)

EllapsedTime: 56.6 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scTensor
###
##############################################################################
##############################################################################


* checking for file ‘scTensor/DESCRIPTION’ ... OK
* preparing ‘scTensor’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘scTensor.Rmd’ using rmarkdown

Quitting from scTensor.Rmd:75-77 [AHub2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.Hub_get1()`:
! no records found for the given index
---
Backtrace:
    ▆
 1. ├─query(ah, c("LRBaseDb", "Homo sapiens", "v002"))[[1]]
 2. └─query(ah, c("LRBaseDb", "Homo sapiens", "v002"))[[1]]
 3.   └─AnnotationHub (local) .local(x, i, j = j, ...)
 4.     └─AnnotationHub:::.Hub_get1(x[i], force = force, verbose = verbose)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'scTensor.Rmd' failed with diagnostics:
no records found for the given index
--- failed re-building ‘scTensor.Rmd’

--- re-building ‘scTensor_1_Data_format_ID_Conversion.Rmd’ using rmarkdown
--- finished re-building ‘scTensor_1_Data_format_ID_Conversion.Rmd’

--- re-building ‘scTensor_2_Report_Interpretation.Rmd’ using rmarkdown
--- finished re-building ‘scTensor_2_Report_Interpretation.Rmd’

--- re-building ‘scTensor_3_CCI_Simulation.Rmd’ using rmarkdown
--- finished re-building ‘scTensor_3_CCI_Simulation.Rmd’

--- re-building ‘scTensor_4_Reanalysis.Rmd’ using rmarkdown
--- finished re-building ‘scTensor_4_Reanalysis.Rmd’

SUMMARY: processing the following file failed:
  ‘scTensor.Rmd’

Error: Vignette re-building failed.
Execution halted