Xiaojing Wang
| Snapshot Date: 2025-04-24 15:01 -0400 (Thu, 24 Apr 2025) |
| git_url: https://git.bioconductor.org/packages/pepXMLTab |
| git_branch: RELEASE_3_21 |
| git_last_commit: 3712347 |
| git_last_commit_date: 2025-04-15 10:36:34 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-04-28 13:02 -0400 (Mon, 28 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4832 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" | 4574 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4558 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.0 RC (2025-04-04 r88129) -- "How About a Twenty-Six" | 4553 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1560/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| pepXMLTab 1.42.0 (landing page) Xiaojing Wang
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | ERROR | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | ERROR | |||||||||
|
To the developers/maintainers of the pepXMLTab package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pepXMLTab.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: pepXMLTab |
| Version: 1.42.0 |
| Command: rm -rf pepXMLTab.buildbin-libdir && mkdir pepXMLTab.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh pepXMLTab_1.42.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R pepXMLTab.buildbin-libdir |
| StartedAt: 2025-04-26 18:30:25 -0400 (Sat, 26 Apr 2025) |
| EndedAt: 2025-04-26 18:30:29 -0400 (Sat, 26 Apr 2025) |
| EllapsedTime: 4.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf pepXMLTab.buildbin-libdir && mkdir pepXMLTab.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh pepXMLTab_1.42.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R pepXMLTab.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=pepXMLTab.buildbin-libdir pepXMLTab_1.42.0.tar.gz' >>>>>>> * installing *source* package ‘pepXMLTab’ ... ** this is package ‘pepXMLTab’ version ‘1.42.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pepXMLTab) chown: pepXMLTab.buildbin-libdir/pepXMLTab/extdata/pepxml/SEQUEST.pepXML: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/extdata/pepxml/XTandem.pepXML: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/extdata/pepxml/Myrimatch.pepXML: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/extdata/pepxml/Mascot.pepXML: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/extdata/pepxml: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/extdata: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/R/pepXMLTab: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/R/pepXMLTab.rdx: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/R/pepXMLTab.rdb: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/R: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/unitTests/test_PSMfilter.R: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/unitTests/tmp.pepXML: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/unitTests/test_pepXML2tab.R: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/unitTests: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/Meta/vignette.rds: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/Meta/links.rds: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/Meta/features.rds: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/Meta/nsInfo.rds: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/Meta/package.rds: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/Meta/hsearch.rds: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/Meta/Rd.rds: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/Meta: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/NAMESPACE: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/html/R.css: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/html/00Index.html: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/html: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/DESCRIPTION: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/NEWS: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/INDEX: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/doc/pepXMLTab.R: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/doc/index.html: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/doc/pepXMLTab.Rnw: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/doc/pepXMLTab.pdf: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/doc: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/help/AnIndex: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/help/aliases.rds: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/help/paths.rds: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/help/pepXMLTab.rdx: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/help/pepXMLTab.rdb: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab/help: Operation not permitted chown: pepXMLTab.buildbin-libdir/pepXMLTab: Operation not permitted