Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-04-17 11:47 -0400 (Thu, 17 Apr 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4667 |
palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" | 4573 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4599 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4553 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4570 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1530/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Kim Philipp Jablonski
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the pareg package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pareg.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: pareg |
Version: 1.12.0 |
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data pareg |
StartedAt: 2025-04-17 01:14:32 -0000 (Thu, 17 Apr 2025) |
EndedAt: 2025-04-17 01:16:22 -0000 (Thu, 17 Apr 2025) |
EllapsedTime: 109.1 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data pareg ### ############################################################################## ############################################################################## * checking for file ‘pareg/DESCRIPTION’ ... OK * preparing ‘pareg’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘pareg.Rmd’ using rmarkdown Channels: - anaconda Platform: linux-aarch64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/biocbuild/.cache/R/basilisk/1.20.0/pareg/1.12.0/pareg added / updated specs: - python=3.12.8 The following NEW packages will be INSTALLED: _libgcc_mutex anaconda/linux-aarch64::_libgcc_mutex-0.1-main _openmp_mutex anaconda/linux-aarch64::_openmp_mutex-5.1-51_gnu bzip2 anaconda/linux-aarch64::bzip2-1.0.8-h998d150_6 ca-certificates anaconda/linux-aarch64::ca-certificates-2025.2.25-hd43f75c_0 expat anaconda/linux-aarch64::expat-2.7.1-h419075a_0 ld_impl_linux-aar~ anaconda/linux-aarch64::ld_impl_linux-aarch64-2.40-h48e3ba3_0 libffi anaconda/linux-aarch64::libffi-3.4.4-h419075a_1 libgcc-ng anaconda/linux-aarch64::libgcc-ng-11.2.0-h1234567_1 libgomp anaconda/linux-aarch64::libgomp-11.2.0-h1234567_1 libstdcxx-ng anaconda/linux-aarch64::libstdcxx-ng-11.2.0-h1234567_1 libuuid anaconda/linux-aarch64::libuuid-1.41.5-h998d150_0 ncurses anaconda/linux-aarch64::ncurses-6.4-h419075a_0 openssl anaconda/linux-aarch64::openssl-3.0.16-h998d150_0 pip anaconda/linux-aarch64::pip-25.0-py312hd43f75c_0 python anaconda/linux-aarch64::python-3.12.8-h8edadfe_0 readline anaconda/linux-aarch64::readline-8.2-h998d150_0 setuptools anaconda/linux-aarch64::setuptools-75.8.0-py312hd43f75c_0 sqlite anaconda/linux-aarch64::sqlite-3.45.3-h998d150_0 tk anaconda/linux-aarch64::tk-8.6.14-h987d8db_0 tzdata anaconda/noarch::tzdata-2025a-h04d1e81_0 wheel anaconda/linux-aarch64::wheel-0.45.1-py312hd43f75c_0 xz anaconda/linux-aarch64::xz-5.6.4-h998d150_1 zlib anaconda/linux-aarch64::zlib-1.2.13-h998d150_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - anaconda Platform: linux-aarch64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done # All requested packages already installed. Channels: - anaconda Platform: linux-aarch64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... failed LibMambaUnsatisfiableError: Encountered problems while solving: - package tensorflow-base-2.10.0-eigen_py37ha372be2_0 requires python >=3.7,<3.8.0a0, but none of the providers can be installed Could not solve for environment specs The following packages are incompatible ├─ python 3.12.8** is requested and can be installed; └─ tensorflow 2.10.0** is not installable because there are no viable options ├─ tensorflow 2.10.0 would require │ └─ tensorflow-base [2.10.0 eigen_py37ha372be2_0|2.10.0 mkl_py37hfdbf31d_0], which requires │ └─ python >=3.7,<3.8.0a0 , which conflicts with any installable versions previously reported; ├─ tensorflow 2.10.0 would require │ └─ tensorflow-base [2.10.0 eigen_py310ha372be2_0|2.10.0 mkl_py310hfdbf31d_0], which requires │ └─ python >=3.10,<3.11.0a0 , which conflicts with any installable versions previously reported; ├─ tensorflow 2.10.0 would require │ └─ tensorflow-base [2.10.0 eigen_py38ha372be2_0|2.10.0 mkl_py38hfdbf31d_0], which requires │ └─ python >=3.8,<3.9.0a0 , which conflicts with any installable versions previously reported; └─ tensorflow 2.10.0 would require └─ tensorflow-base [2.10.0 eigen_py39ha372be2_0|2.10.0 mkl_py39hfdbf31d_0], which requires └─ python >=3.9,<3.10.0a0 , which conflicts with any installable versions previously reported. Quitting from pareg.Rmd:144-150 [unnamed-chunk-9] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! one or more Python packages failed to install [error code 1] --- Backtrace: ▆ 1. └─pareg::pareg(...) 2. └─basilisk::basiliskStart(...) 3. └─basilisk::obtainEnvironmentPath(env) 4. └─basilisk::setupBasiliskEnv(...) 5. └─reticulate::conda_install(...) 6. └─reticulate:::stopf(fmt, result) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'pareg.Rmd' failed with diagnostics: one or more Python packages failed to install [error code 1] --- failed re-building ‘pareg.Rmd’ --- re-building ‘pathway_similarities.Rmd’ using rmarkdown --- finished re-building ‘pathway_similarities.Rmd’ SUMMARY: processing the following file failed: ‘pareg.Rmd’ Error: Vignette re-building failed. Execution halted