| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-04-18 11:42 -0400 (Fri, 18 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4831 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" | 4573 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4599 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4553 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4570 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1446/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| nipalsMCIA 1.6.0 (landing page) Maximilian Mattessich
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the nipalsMCIA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nipalsMCIA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: nipalsMCIA |
| Version: 1.6.0 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:nipalsMCIA.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings nipalsMCIA_1.6.0.tar.gz |
| StartedAt: 2025-04-18 04:56:43 -0400 (Fri, 18 Apr 2025) |
| EndedAt: 2025-04-18 05:02:49 -0400 (Fri, 18 Apr 2025) |
| EllapsedTime: 365.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: nipalsMCIA.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:nipalsMCIA.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings nipalsMCIA_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/nipalsMCIA.Rcheck'
* using R version 4.5.0 RC (2025-04-04 r88126 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'nipalsMCIA/DESCRIPTION' ... OK
* this is package 'nipalsMCIA' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'nipalsMCIA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
nipals_multiblock 8.59 0.39 9.07
block_weights_heatmap 8.34 0.50 8.51
vis_load_plot 8.22 0.40 8.64
get_metadata_colors 6.69 0.33 7.02
get_colors 6.41 0.24 6.64
vis_load_ord 6.33 0.18 6.53
projection_plot 6.22 0.21 6.45
ord_loadings 5.84 0.19 6.03
global_scores_eigenvalues_plot 5.61 0.26 5.91
nmb_get_bs 5.23 0.30 5.56
nmb_get_gl 5.21 0.28 5.54
nmb_get_metadata 5.19 0.30 5.52
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
nipalsMCIA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL nipalsMCIA ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library' * installing *source* package 'nipalsMCIA' ... ** this is package 'nipalsMCIA' version '1.6.0' ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nipalsMCIA)
nipalsMCIA.Rcheck/tests/testthat.Rout
R version 4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
>
> library(nipalsMCIA)
> library(testthat)
>
> test_check("nipalsMCIA")
Performing column-level pre-processing...
Column pre-processing completed.
Performing block-level preprocessing...
Block pre-processing completed.
Computing order 1 scores
Computing order 2 scores
Performing column-level pre-processing...
Column pre-processing completed.
Performing block-level preprocessing...
Block pre-processing completed.
Computing order 1 scores
Computing order 2 scores
Computing order 3 scores
Performing column-level pre-processing...
Column pre-processing completed.
Performing block-level preprocessing...
Block pre-processing completed.
Computing order 1 scores
Computing order 2 scores
Running GSEA for Factor 1
|
| | 0%
|
|= | 2%
|
|== | 3%
|
|=== | 5%
|
|==== | 6%
|
|====== | 8%
|
|======= | 10%
|
|======== | 11%
|
|========= | 13%
|
|========== | 14%
|
|=========== | 16%
|
|============ | 17%
|
|============= | 19%
|
|============== | 21%
|
|================ | 22%
|
|================= | 24%
|
|================== | 25%
|
|=================== | 27%
|
|==================== | 29%
|
|===================== | 30%
|
|====================== | 32%
|
|======================= | 33%
|
|======================== | 35%
|
|========================== | 37%
|
|=========================== | 38%
|
|============================ | 40%
|
|============================= | 41%
|
|============================== | 43%
|
|=============================== | 44%
|
|================================ | 46%
|
|================================= | 48%
|
|================================== | 49%
|
|==================================== | 51%
|
|===================================== | 52%
|
|====================================== | 54%
|
|======================================= | 56%
|
|======================================== | 57%
|
|========================================= | 59%
|
|========================================== | 60%
|
|=========================================== | 62%
|
|============================================ | 63%
|
|============================================== | 65%
|
|=============================================== | 67%
|
|================================================ | 68%
|
|================================================= | 70%
|
|================================================== | 71%
|
|=================================================== | 73%
|
|==================================================== | 75%
|
|===================================================== | 76%
|
|====================================================== | 78%
|
|======================================================== | 79%
|
|========================================================= | 81%
|
|========================================================== | 83%
|
|=========================================================== | 84%
|
|============================================================ | 86%
|
|============================================================= | 87%
|
|============================================================== | 89%
|
|=============================================================== | 90%
|
|================================================================ | 92%
|
|================================================================== | 94%
|
|=================================================================== | 95%
|
|==================================================================== | 97%
|
|===================================================================== | 98%
|
|======================================================================| 100%
Performing column-level pre-processing...
Column pre-processing completed.
Performing block-level preprocessing...
Block pre-processing completed.
Computing order 1 scores
Computing order 2 scores
Computing order 3 scores
Computing order 4 scores
Performing pre-processing on data
Pre-processing completed
color_col option not recognized, defaulting to black/white plotting.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 57 ]
>
> proc.time()
user system elapsed
41.06 2.04 42.87
nipalsMCIA.Rcheck/nipalsMCIA-Ex.timings
| name | user | system | elapsed | |
| block_preproc | 0 | 0 | 0 | |
| block_weights_heatmap | 8.34 | 0.50 | 8.51 | |
| cc_preproc | 0 | 0 | 0 | |
| col_preproc | 0 | 0 | 0 | |
| deflate_block_bl | 0 | 0 | 0 | |
| deflate_block_gs | 0 | 0 | 0 | |
| extract_from_mae | 0.86 | 0.31 | 0.81 | |
| get_colors | 6.41 | 0.24 | 6.64 | |
| get_metadata_colors | 6.69 | 0.33 | 7.02 | |
| get_tv | 0.23 | 0.03 | 0.26 | |
| global_scores_eigenvalues_plot | 5.61 | 0.26 | 5.91 | |
| nipals_iter | 0.25 | 0.04 | 0.28 | |
| nipals_multiblock | 8.59 | 0.39 | 9.07 | |
| nmb_get_bl | 4.02 | 0.14 | 4.19 | |
| nmb_get_bs | 5.23 | 0.30 | 5.56 | |
| nmb_get_bs_weights | 4.60 | 0.22 | 4.83 | |
| nmb_get_eigs | 4.32 | 0.17 | 4.51 | |
| nmb_get_gl | 5.21 | 0.28 | 5.54 | |
| nmb_get_gs | 4.17 | 0.14 | 4.35 | |
| nmb_get_metadata | 5.19 | 0.30 | 5.52 | |
| ord_loadings | 5.84 | 0.19 | 6.03 | |
| predict_gs | 1.39 | 0.00 | 1.44 | |
| projection_plot | 6.22 | 0.21 | 6.45 | |
| simple_mae | 0.42 | 0.00 | 0.42 | |
| vis_load_ord | 6.33 | 0.18 | 6.53 | |
| vis_load_plot | 8.22 | 0.40 | 8.64 | |