John R. Stevens
| Snapshot Date: 2025-04-22 13:40 -0400 (Tue, 22 Apr 2025) |
| git_url: https://git.bioconductor.org/packages/metahdep |
| git_branch: RELEASE_3_21 |
| git_last_commit: a03807f |
| git_last_commit_date: 2025-04-15 09:44:10 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-04-24 13:02 -0400 (Thu, 24 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4831 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" | 4573 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1234/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| metahdep 1.66.0 (landing page) John R. Stevens
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the metahdep package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metahdep.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: metahdep |
| Version: 1.66.0 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL metahdep |
| StartedAt: 2025-04-22 15:25:41 -0400 (Tue, 22 Apr 2025) |
| EndedAt: 2025-04-22 15:25:55 -0400 (Tue, 22 Apr 2025) |
| EllapsedTime: 13.2 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL metahdep
###
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* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'metahdep' ...
** this is package 'metahdep' version '1.66.0'
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 14.2.0'
gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c metahdep.c -o metahdep.o
In file included from metahdep.c:3:
metahdep.c: In function 'get_row_indices2':
E:/biocbuild/bbs-3.21-bioc/R/include/Rinternals.h:203:17: error: passing argument 5 of 'metan_binary_search_unique' makes integer from pointer without a cast [-Wint-conversion]
203 | #define CHAR(x) R_CHAR(x)
| ^~~~~~~~~
| |
| const char *
metahdep.c:471:107: note: in expansion of macro 'CHAR'
471 | index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
| ^~~~
metahdep.c:372:103: note: expected 'char' but argument is of type 'const char *'
372 | SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
| ~~~~~^~~~~~~~~~~~
make: *** [E:/biocbuild/bbs-3.21-bioc/R/etc/x64/Makeconf:289: metahdep.o] Error 1
ERROR: compilation failed for package 'metahdep'
* removing 'E:/biocbuild/bbs-3.21-bioc/R/library/metahdep'