Multiple platform build/check report for BioC 3.21 - BUILD results for memes on palomino7

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six"	4831
palomino7	Windows Server 2022 Datacenter	x64	4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six"	4573
lconway	macOS 12.7.1 Monterey	x86_64	4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six"	4599
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six"	4553
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4570
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for memes on palomino7

To the developers/maintainers of the memes package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/memes.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: memes

Version: 1.16.0

Command: chmod a+r memes -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data memes

StartedAt: 2025-04-21 20:22:30 -0400 (Mon, 21 Apr 2025)

EndedAt: 2025-04-21 20:24:16 -0400 (Mon, 21 Apr 2025)

EllapsedTime: 106.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r memes -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data memes
###
##############################################################################
##############################################################################


* checking for file 'memes/DESCRIPTION' ... OK
* preparing 'memes':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'core_ame.Rmd' using rmarkdown
--- finished re-building 'core_ame.Rmd'

--- re-building 'core_dreme.Rmd' using rmarkdown
--- finished re-building 'core_dreme.Rmd'

--- re-building 'core_fimo.Rmd' using rmarkdown
--- finished re-building 'core_fimo.Rmd'

--- re-building 'core_tomtom.Rmd' using rmarkdown

Quitting from core_tomtom.Rmd:114-117 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `view_motifs_prep()`:
! unused argument (flip.neg = flip.neg)
---
Backtrace:
    ▆
 1. ├─example_tomtom$tomtom[[1]]$match_motif[1:2] %>% view_motifs()
 2. └─universalmotif::view_motifs(.)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'core_tomtom.Rmd' failed with diagnostics:
unused argument (flip.neg = flip.neg)
--- failed re-building 'core_tomtom.Rmd'

--- re-building 'install_guide.Rmd' using rmarkdown
--- finished re-building 'install_guide.Rmd'

--- re-building 'integrative_analysis.Rmd' using rmarkdown
--- finished re-building 'integrative_analysis.Rmd'

--- re-building 'tidy_motifs.Rmd' using rmarkdown
--- finished re-building 'tidy_motifs.Rmd'

SUMMARY: processing the following file failed:
  'core_tomtom.Rmd'

Error: Vignette re-building failed.
Execution halted