Back to Multiple platform build/check report for BioC 3.21:   simplified   long
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2025-05-01 11:40 -0400 (Thu, 01 May 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4832
palomino7Windows Server 2022 Datacenterx644.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" 4574
merida1macOS 12.7.5 Montereyx86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4599
kjohnson1macOS 13.6.6 Venturaarm644.5.0 RC (2025-04-04 r88129) -- "How About a Twenty-Six" 4553
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 402/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cnvGSA 1.52.0  (landing page)
Joseph Lugo
Snapshot Date: 2025-04-28 17:48 -0400 (Mon, 28 Apr 2025)
git_url: https://git.bioconductor.org/packages/cnvGSA
git_branch: RELEASE_3_21
git_last_commit: 29c888e
git_last_commit_date: 2025-04-15 10:13:21 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published

BUILD results for cnvGSA on palomino7

To the developers/maintainers of the cnvGSA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cnvGSA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: cnvGSA
Version: 1.52.0
Command: chmod a+r cnvGSA -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data cnvGSA
StartedAt: 2025-04-28 21:46:43 -0400 (Mon, 28 Apr 2025)
EndedAt: 2025-04-28 21:47:16 -0400 (Mon, 28 Apr 2025)
EllapsedTime: 32.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r cnvGSA -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data cnvGSA
###
##############################################################################
##############################################################################


* checking for file 'cnvGSA/DESCRIPTION' ... OK
* preparing 'cnvGSA':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'cnvGSA-vignette.Rnw' using Sweave
Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 1033
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "cnvGSA-vignette.tex" ' had status 1033
Error: processing vignette 'cnvGSA-vignette.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'cnvGSA-vignette.pdf' for vignette with name 'cnvGSA-vignette' and engine 'utils::Sweave'. The following files exist in working directory 'E:\biocbuild\bbs-3.21-bioc\tmpdir\RtmpUZVY4s\Rbuild208f45f5245a7\cnvGSA\vignettes': 'cnvGSA-vignette.Rnw' (2868 bytes), 'cnvGSA-vignette.tex' (2927 bytes)
--- failed re-building 'cnvGSA-vignette.Rnw'

SUMMARY: processing the following file failed:
  'cnvGSA-vignette.Rnw'

Error: Vignette re-building failed.
Execution halted