Xiuwen Zheng
| Snapshot Date: 2025-04-21 13:40 -0400 (Mon, 21 Apr 2025) |
| git_url: https://git.bioconductor.org/packages/SNPRelate |
| git_branch: RELEASE_3_21 |
| git_last_commit: 9bc59fd |
| git_last_commit_date: 2025-04-15 10:33:51 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-04-22 13:20 -0400 (Tue, 22 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4831 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" | 4573 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4599 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4553 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4570 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2038/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SNPRelate 1.42.0 (landing page) Xiuwen Zheng
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SNPRelate package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SNPRelate.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: SNPRelate |
| Version: 1.42.0 |
| Command: /home/biocbuild/R/R/bin/R CMD INSTALL SNPRelate |
| StartedAt: 2025-04-21 20:18:46 -0000 (Mon, 21 Apr 2025) |
| EndedAt: 2025-04-21 20:19:39 -0000 (Mon, 21 Apr 2025) |
| EllapsedTime: 53.7 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL SNPRelate ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’ * installing *source* package ‘SNPRelate’ ... ** this is package ‘SNPRelate’ version ‘1.42.0’ ** using staged installation ** libs using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’ using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c ConvToGDS.cpp -o ConvToGDS.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c R_SNPRelate.c -o R_SNPRelate.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c SNPRelate.cpp -o SNPRelate.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c ThreadPool.cpp -o ThreadPool.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c dGenGWAS.cpp -o dGenGWAS.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c dVect.cpp -o dVect.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c genBeta.cpp -o genBeta.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c genEIGMIX.cpp -o genEIGMIX.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c genFst.cpp -o genFst.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c genHWE.cpp -o genHWE.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c genIBD.cpp -o genIBD.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c genIBS.cpp -o genIBS.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c genKING.cpp -o genKING.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c genLD.cpp -o genLD.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c genPCA.cpp -o genPCA.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c genSlideWin.cpp -o genSlideWin.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o SNPRelate.so ConvToGDS.o R_SNPRelate.o SNPRelate.o ThreadPool.o dGenGWAS.o dVect.o genBeta.o genEIGMIX.o genFst.o genHWE.o genIBD.o genIBS.o genKING.o genLD.o genPCA.o genSlideWin.o -lpthread -L/home/biocbuild/R/R/lib -lRlapack -L/home/biocbuild/R/R/lib -lRblas -lgfortran -lm -L/home/biocbuild/R/R/lib -lR installing to /home/biocbuild/R/R-devel_2025-02-19/site-library/00LOCK-SNPRelate/00new/SNPRelate/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SNPRelate)