Aaron Lun
| Snapshot Date: 2025-04-16 13:40 -0400 (Wed, 16 Apr 2025) |
| git_url: https://git.bioconductor.org/packages/Rigraphlib |
| git_branch: RELEASE_3_21 |
| git_last_commit: a1e7cd0 |
| git_last_commit_date: 2025-04-15 13:48:07 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-04-17 11:44 -0400 (Thu, 17 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4667 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" | 4573 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4599 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4553 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4570 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1789/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Rigraphlib 1.0.0 (landing page) Aaron Lun
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the Rigraphlib package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rigraphlib.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Rigraphlib |
| Version: 1.0.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rigraphlib.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rigraphlib_1.0.0.tar.gz |
| StartedAt: 2025-04-16 23:39:09 -0400 (Wed, 16 Apr 2025) |
| EndedAt: 2025-04-16 23:39:33 -0400 (Wed, 16 Apr 2025) |
| EllapsedTime: 24.1 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: Rigraphlib.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rigraphlib.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rigraphlib_1.0.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib.Rcheck’
* using R version 4.5.0 RC (2025-04-04 r88126)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Rigraphlib/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rigraphlib’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rigraphlib’ can be installed ... WARNING
Found the following significant warnings:
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:366:4: warning: explicitly assigning value of variable of type 'FILE *' (aka 'struct __sFILE *') to itself [-Wself-assign]
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:1297:19: warning: explicitly assigning value of variable of type 'GLPAIJ *' (aka 'struct GLPAIJ *') to itself [-Wself-assign]
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi06.c:565:26: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi06.c:574:20: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios01.c:224:17: warning: explicitly assigning value of variable of type 'IOSNPD *' (aka 'struct IOSNPD *') to itself [-Wself-assign]
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/covgen.c:155:21: warning: variable 'type' is uninitialized when used here [-Wuninitialized]
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/ks.c:428:14: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c:687:17: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c:854:20: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
See ‘/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib.Rcheck/00install.out’ for details.
* checking installed package size ... INFO
installed size is 24.7Mb
sub-directories of 1Mb or more:
igraph 24.6Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
'LinkingTo' field is unused: package has no 'src' directory
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
‘/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib.Rcheck/00check.log’
for details.
Rigraphlib.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rigraphlib
###
##############################################################################
##############################################################################
* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’
* installing *source* package ‘Rigraphlib’ ...
** this is package ‘Rigraphlib’ version ‘1.0.0’
** using staged installation
-- Version number: 0.10.15
-- The C compiler identification is AppleClang 14.0.0.14000029
-- The CXX compiler identification is AppleClang 14.0.0.14000029
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/clang - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /Library/Developer/CommandLineTools/usr/bin/clang++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test COMPILER_SUPPORTS_UNKNOWN_WARNING_OPTION_FLAG
-- Performing Test COMPILER_SUPPORTS_UNKNOWN_WARNING_OPTION_FLAG - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ENUMVAL_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ENUMVAL_ATTR - Success
-- Thread-local storage: supported (__thread)
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Found BLAS: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libRblas.0.dylib
-- Found LAPACK: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libRlapack.dylib
-- Looking for strcasecmp
-- Looking for strcasecmp - found
-- Looking for strncasecmp
-- Looking for strncasecmp - found
-- Looking for _stricmp
-- Looking for _stricmp - not found
-- Looking for _strnicmp
-- Looking for _strnicmp - not found
-- Looking for strdup
-- Looking for strdup - found
-- Looking for strndup
-- Looking for strndup - found
-- Looking for include file xlocale.h
-- Looking for include file xlocale.h - found
-- Looking for uselocale
-- Looking for uselocale - found
-- Looking for _configthreadlocale
-- Looking for _configthreadlocale - not found
-- Performing Test HAVE__UMUL128
-- Performing Test HAVE__UMUL128 - Failed
-- Performing Test HAVE___UMULH
-- Performing Test HAVE___UMULH - Failed
-- Looking for C++ include sys/types.h
-- Looking for C++ include sys/types.h - found
-- Looking for C++ include stdint.h
-- Looking for C++ include stdint.h - found
-- Looking for C++ include stddef.h
-- Looking for C++ include stddef.h - found
-- Check size of __uint128_t
-- Check size of __uint128_t - done
-- Performing Test HAVE__POPCNT64
-- Performing Test HAVE__POPCNT64 - Failed
-- Performing Test HAVE__POPCNT
-- Performing Test HAVE__POPCNT - Failed
-- Performing Test HAVE__BITSCANFORWARD64
-- Performing Test HAVE__BITSCANFORWARD64 - Failed
-- Performing Test HAVE__BITSCANFORWARD
-- Performing Test HAVE__BITSCANFORWARD - Failed
-- Performing Test HAVE__BITSCANREVERSE64
-- Performing Test HAVE__BITSCANREVERSE64 - Failed
-- Performing Test HAVE__BITSCANREVERSE
-- Performing Test HAVE__BITSCANREVERSE - Failed
-- Performing Test HAVE_BUILTIN_OVERFLOW
-- Performing Test HAVE_BUILTIN_OVERFLOW - Success
-- Looking for _LIBCPP_VERSION
-- Looking for _LIBCPP_VERSION - found
-- Looking for __GLIBCXX__
-- Looking for __GLIBCXX__ - not found
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Performing Test HAVE_ENABLE_NEW_DTAGS
-- Performing Test HAVE_ENABLE_NEW_DTAGS - Failed
-- Found Python3: /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/bin/python3.9 (found version "3.9.6") found components: Interpreter
--
-- -----[ Build configuration ]----
-- Version: 0.10.15
-- CMake build type: Release
-- Library type: static
-- igraph_integer_t size: 64 bits
--
-- ----------[ Features ]----------
-- GLPK for optimization: yes
-- Reading GraphML files: yes
-- Thread-local storage: yes
-- Link-time optimization: no
--
-- --------[ Dependencies ]--------
-- ARPACK: vendored
-- BISON: no
-- BLAS: yes
-- FLEX: no
-- GLPK: vendored
-- GMP: vendored
-- LAPACK: yes
-- LibXml2: yes
-- OpenMP: no
-- PLFIT: vendored
--
-- -----------[ Testing ]----------
-- Diff tool: diff
-- Sanitizers: none
-- Code coverage: no
-- Verify 'finally' stack: no
--
-- --------[ Documentation ]-------
-- HTML: no
-- PDF: no
-- INFO: no
--
-- igraph configured successfully.
--
-- Configuring done (17.9s)
-- Generating done (7.7s)
-- Build files have been written to: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/build
[ 0%] Building CXX object src/isomorphism/bliss/CMakeFiles/bliss.dir/defs.cc.o
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/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/arithchk.c:169:9: warning: variable 't' set but not used [-Wunused-but-set-variable]
double t;
^
1 warning generated.
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/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:366:4: warning: explicitly assigning value of variable of type 'FILE *' (aka 'struct __sFILE *') to itself [-Wself-assign]
f = f; /* banish non-use warning */
~ ^ ~
1 warning generated.
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/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/open.c:58:6: warning: variable 'nbuf' is used uninitialized whenever '||' condition is true [-Wsometimes-uninitialized]
if (len != f__buflen || !(nbuf = (char*)malloc(len)))
^~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/open.c:60:6: note: uninitialized use occurs here
s = nbuf;
^~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/open.c:58:6: note: remove the '||' if its condition is always false
if (len != f__buflen || !(nbuf = (char*)malloc(len)))
^~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/open.c:51:12: note: initialize the variable 'nbuf' to silence this warning
char *nbuf, *s, *t, *te;
^
= NULL
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waitpause(Sigarg)
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/s_paus.c:40:1: warning: unused function 's_1paus' [-Wunused-function]
s_1paus(FILE *fin)
^
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/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:1297:19: warning: explicitly assigning value of variable of type 'GLPAIJ *' (aka 'struct GLPAIJ *') to itself [-Wself-assign]
for (aij = aij; aij != NULL; aij = aij->c_next)
~~~ ^ ~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:1341:22: warning: variable 'rhs' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if (type == GLP_DB || type == GLP_FX)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:1346:14: note: uninitialized use occurs here
if (rhs != 0.0)
^~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:1341:18: note: remove the 'if' if its condition is always true
else if (type == GLP_DB || type == GLP_FX)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:1330:20: note: initialize the variable 'rhs' to silence this warning
double rhs;
^
= 0.0
2 warnings generated.
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/netgen.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/npp.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/pript.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/prmip.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/prob1.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/prob2.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c:230:10: warning: variable 'lb' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c:233:14: note: uninitialized use occurs here
return lb;
^~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c:219:16: note: initialize the variable 'lb' to silence this warning
{ double lb;
^
= 0.0
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c:263:10: warning: variable 'ub' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c:266:14: note: uninitialized use occurs here
return ub;
^~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c:252:16: note: initialize the variable 'ub' to silence this warning
{ double ub;
^
= 0.0
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c:324:10: warning: variable 'lb' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c:327:14: note: uninitialized use occurs here
return lb;
^~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c:312:16: note: initialize the variable 'lb' to silence this warning
{ double lb;
^
= 0.0
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c:358:10: warning: variable 'ub' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c:361:14: note: uninitialized use occurs here
return ub;
^~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c:346:16: note: initialize the variable 'ub' to silence this warning
{ double ub;
^
= 0.0
4 warnings generated.
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/prob3.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/prob4.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/prob5.c.o
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[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/wrsol.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/btf.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/btfint.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/fhv.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/fhvint.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/ifu.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/luf.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/lufint.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/scf.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scf.c:504:10: warning: variable 'ret' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scf.c:507:11: note: uninitialized use occurs here
if (ret != 0)
^~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scf.c:474:17: note: initialize the variable 'ret' to silence this warning
int k, ret;
^
= 0
1 warning generated.
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/scfint.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scfint.c:72:10: warning: variable 'n0_max' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scfint.c:76:24: note: uninitialized use occurs here
if (old_n0_max < n0_max)
^~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scfint.c:46:37: note: initialize the variable 'n0_max' to silence this warning
int nn_max, old_n0_max, n0_max, k, ret;
^
= 0
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scfint.c:72:10: warning: variable 'old_n0_max' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scfint.c:76:11: note: uninitialized use occurs here
if (old_n0_max < n0_max)
^~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scfint.c:46:29: note: initialize the variable 'old_n0_max' to silence this warning
int nn_max, old_n0_max, n0_max, k, ret;
^
= 0
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scfint.c:209:10: warning: variable 'norm' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scfint.c:212:14: note: uninitialized use occurs here
return norm;
^~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scfint.c:198:18: note: initialize the variable 'norm' to silence this warning
double norm;
^
= 0.0
3 warnings generated.
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/sgf.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/sva.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/colamd/colamd.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/bfd.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/bfd.c:270:17: warning: unused variable 'cond' [-Wunused-variable]
double cond;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/bfd.c:248:10: warning: variable 'ret' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/bfd.c:268:11: note: uninitialized use occurs here
if (ret == 0)
^~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/bfd.c:143:20: note: initialize the variable 'ret' to silence this warning
int type, ret;
^
= 0
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/bfd.c:474:16: warning: variable 'ret' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/bfd.c:478:21: note: uninitialized use occurs here
switch (ret)
^~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/bfd.c:439:14: note: initialize the variable 'ret' to silence this warning
int ret;
^
= 0
3 warnings generated.
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/bfx.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpapi06.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi06.c:565:26: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
status = status;
~~~~~~ ^ ~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi06.c:574:20: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
status = status;
~~~~~~ ^ ~~~~~~
2 warnings generated.
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpapi07.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi07.c:433:10: warning: variable 'pst' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi07.c:437:22: note: uninitialized use occurs here
lp->pbs_stat = pst;
^~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi07.c:262:29: note: initialize the variable 'pst' to silence this warning
int i, j, k, type, pst, dst, ret, stat;
^
= 0
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi07.c:433:10: warning: variable 'dst' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi07.c:438:22: note: uninitialized use occurs here
lp->dbs_stat = dst;
^~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi07.c:262:34: note: initialize the variable 'dst' to silence this warning
int i, j, k, type, pst, dst, ret, stat;
^
= 0
2 warnings generated.
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpapi08.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpapi09.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpapi10.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpapi12.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c:1632:16: warning: variable 'dir' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if (type == GLP_UP)
^~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c:1648:46: note: uninitialized use occurs here
piv = glp_dual_rtest(P, len, ind, val, dir, eps);
^~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c:1632:12: note: remove the 'if' if its condition is always true
else if (type == GLP_UP)
^~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c:1586:20: note: initialize the variable 'dir' to silence this warning
{ int t, k, dir, piv, ret = 0;
^
= 0
1 warning generated.
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpapi13.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpios01.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios01.c:224:17: warning: explicitly assigning value of variable of type 'IOSNPD *' (aka 'struct IOSNPD *') to itself [-Wself-assign]
for (node = node; node != NULL; node = node->up)
~~~~ ^ ~~~~
1 warning generated.
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpios02.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpios03.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c:80:16: warning: variable 'rho' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if (T->mip->dir == GLP_MAX)
^~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c:96:63: note: uninitialized use occurs here
T->mip->it_cnt, bingo ? ">>>>>" : "mip =", best_mip, rho,
^~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c:80:12: note: remove the 'if' if its condition is always true
else if (T->mip->dir == GLP_MAX)
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c:53:46: note: initialize the variable 'rho' to silence this warning
char best_mip[50], best_bound[50], *rho, rel_gap[50];
^
= NULL
1 warning generated.
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpios07.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpios09.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:68:16: warning: variable 'j' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if (T->parm->br_tech == GLP_BR_PCH)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:74:14: note: uninitialized use occurs here
return j;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:68:12: note: remove the 'if' if its condition is always true
else if (T->parm->br_tech == GLP_BR_PCH)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:51:12: note: initialize the variable 'j' to silence this warning
{ int j;
^
= 0
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:456:22: warning: variable 'degrad' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if (P->dir == GLP_MAX)
^~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:464:17: note: uninitialized use occurs here
if (degrad < 1e-6 * (1.0 + 0.001 * fabs(P->obj_val)))
^~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:456:18: note: remove the 'if' if its condition is always true
else if (P->dir == GLP_MAX)
^~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:430:20: note: initialize the variable 'degrad' to silence this warning
double degrad;
^
= 0.0
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:560:16: warning: variable 'psi' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if (brnch == GLP_UP_BRNCH)
^~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:577:14: note: uninitialized use occurs here
done: return psi;
^~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:560:12: note: remove the 'if' if its condition is always true
else if (brnch == GLP_UP_BRNCH)
^~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:542:31: note: initialize the variable 'psi' to silence this warning
double beta, degrad, psi;
^
= 0.0
3 warnings generated.
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpios11.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpios12.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios12.c:66:16: warning: variable 'p' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if (T->parm->bt_tech == GLP_BT_BPH)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios12.c:78:14: note: uninitialized use occurs here
return p;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios12.c:66:12: note: remove the 'if' if its condition is always true
else if (T->parm->bt_tech == GLP_BT_BPH)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios12.c:51:12: note: initialize the variable 'p' to silence this warning
{ int p;
^
= 0
1 warning generated.
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpipm.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpipm.c:1060:16: warning: variable 'dir' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if (P->dir == GLP_MAX)
^~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpipm.c:1064:14: note: uninitialized use occurs here
c[0] = dir * P->c0;
^~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpipm.c:1060:12: note: remove the 'if' if its condition is always true
else if (P->dir == GLP_MAX)
^~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpipm.c:1030:17: note: initialize the variable 'dir' to silence this warning
double dir, *A_val, *b, *c, *x, *y, *z;
^
= 0.0
1 warning generated.
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpmat.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpscl.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpssx01.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpssx02.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/lux.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/env/alloc.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/env/dlsup.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/env/env.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/env/error.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/env/stdc.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/env/stdout.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/env/stream.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/env/time.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/env/tls.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/intopt/cfg.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/intopt/cfg1.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/intopt/cfg2.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/intopt/clqcut.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/intopt/covgen.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/covgen.c:154:10: warning: variable 'rhs' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/covgen.c:160:12: note: uninitialized use occurs here
*b = rhs / a1->val;
^~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/covgen.c:108:17: note: initialize the variable 'rhs' to silence this warning
double rhs;
^
= 0.0
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/covgen.c:155:21: warning: variable 'type' is uninitialized when used here [-Wuninitialized]
xassert(type != type);
^~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/env/env.h:175:16: note: expanded from macro 'xassert'
((void)((expr) || (glp_assert_(#expr, IGRAPH_FILE_BASENAME, __LINE__), 1)))
^~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/covgen.c:107:15: note: initialize the variable 'type' to silence this warning
int type;
^
= 0
2 warnings generated.
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/intopt/fpump.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/intopt/gmicut.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/intopt/gmigen.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/intopt/mirgen.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/mirgen.c:987:19: warning: variable 'x' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if (mir->subst[k] == 'U')
^~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/mirgen.c:1000:14: note: uninitialized use occurs here
if (x < -0.001)
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/mirgen.c:987:15: note: remove the 'if' if its condition is always true
else if (mir->subst[k] == 'U')
^~~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/mirgen.c:974:18: note: initialize the variable 'x' to silence this warning
{ double x;
^
= 0.0
1 warning generated.
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/intopt/spv.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/minisat/minisat.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/avl.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/bignum.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/dimacs.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/dmp.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/ffalg.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/fp2rat.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/fvs.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/gcd.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/hbm.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/jd.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/keller.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/ks.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/ks.c:428:14: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
for (j = j; j <= n; j++)
~ ^ ~
1 warning generated.
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/mc13d.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/mc21a.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/mt1.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/mygmp.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/okalg.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/qmd.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/relax4.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/rgr.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/rng.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/rng1.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/round2n.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/spm.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/str2int.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/str2num.c.o
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/strspx.c.o
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/strtrim.c.o
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/triang.c.o
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/wclique.c.o
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/wclique1.c.o
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/mpl/mpl1.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1079:10: warning: variable 'code' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1082:14: note: uninitialized use occurs here
return code;
^~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:940:17: note: initialize the variable 'code' to silence this warning
CODE *code;
^
= NULL
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1228:16: warning: variable 'op' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if (strcmp(mpl->image, "gmtime") == 0)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1240:11: note: uninitialized use occurs here
if (op == O_MIN || op == O_MAX)
^~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1228:12: note: remove the 'if' if its condition is always true
else if (strcmp(mpl->image, "gmtime") == 0)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1174:13: note: initialize the variable 'op' to silence this warning
int op;
^
= 0
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:2022:10: warning: variable 'code' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:2028:15: note: uninitialized use occurs here
link_up(code);
^~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1941:17: note: initialize the variable 'code' to silence this warning
{ CODE *code;
^
= NULL
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1959:16: warning: variable 'op' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if (strcmp(mpl->image, "setof") == 0)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1971:15: note: uninitialized use occurs here
switch (op)
^~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1959:12: note: remove the 'if' if its condition is always true
else if (strcmp(mpl->image, "setof") == 0)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1943:13: note: initialize the variable 'op' to silence this warning
int op;
^
= 0
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:2247:16: warning: variable 'code' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if (mpl->token == T_IF)
^~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:2257:14: note: uninitialized use occurs here
return code;
^~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:2247:12: note: remove the 'if' if its condition is always true
else if (mpl->token == T_IF)
^~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:2196:17: note: initialize the variable 'code' to silence this warning
{ CODE *code;
^
= NULL
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:3849:16: warning: variable 'type' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if (is_keyword(mpl, "maximize"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl.h:365:20: note: expanded from macro 'is_keyword'
#define is_keyword _glp_mpl_is_keyword
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:3873:19: note: uninitialized use occurs here
obj->type = type;
^~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:3849:12: note: remove the 'if' if its condition is always true
else if (is_keyword(mpl, "maximize"))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:3846:15: note: initialize the variable 'type' to silence this warning
int type;
^
= 0
6 warnings generated.
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/mpl/mpl2.c.o
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/mpl/mpl3.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2383:16: warning: variable 'refer' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if (set->option != NULL)
^~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2393:14: note: uninitialized use occurs here
return refer;
^~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2383:12: note: remove the 'if' if its condition is always true
else if (set->option != NULL)
^~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2367:21: note: initialize the variable 'refer' to silence this warning
ELEMSET *refer;
^
= NULL
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2714:16: warning: variable 'value' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if (par->defval != NULL)
^~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2727:14: note: uninitialized use occurs here
return value;
^~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2714:12: note: remove the 'if' if its condition is always true
else if (par->defval != NULL)
^~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2693:19: note: initialize the variable 'value' to silence this warning
double value;
^
= 0.0
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2952:16: warning: variable 'value' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if (par->defval != NULL)
^~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2962:14: note: uninitialized use occurs here
return value;
^~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2952:12: note: remove the 'if' if its condition is always true
else if (par->defval != NULL)
^~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2931:20: note: initialize the variable 'value' to silence this warning
SYMBOL *value;
^
= NULL
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:3898:10: warning: variable 'value' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:3904:25: note: uninitialized use occurs here
code->value.num = value;
^~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:3602:19: warning: variable 'value' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:3904:25: note: uninitialized use occurs here
code->value.num = value;
^~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:3562:19: warning: variable 'value' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:3904:25: note: uninitialized use occurs here
code->value.num = value;
^~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:3491:19: note: initialize the variable 'value' to silence this warning
{ double value;
^
= 0.0
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4024:10: warning: variable 'value' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4030:42: note: uninitialized use occurs here
code->value.sym = copy_symbol(mpl, value);
^~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:3915:20: note: initialize the variable 'value' to silence this warning
{ SYMBOL *value;
^
= NULL
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4275:10: warning: variable 'value' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4281:25: note: uninitialized use occurs here
code->value.bit = value;
^~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4071:16: note: initialize the variable 'value' to silence this warning
{ int value;
^
= 0
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4323:10: warning: variable 'value' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4329:43: note: uninitialized use occurs here
code->value.tuple = copy_tuple(mpl, value);
^~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4292:19: note: initialize the variable 'value' to silence this warning
{ TUPLE *value;
^
= NULL
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4479:10: warning: variable 'value' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4485:43: note: uninitialized use occurs here
code->value.set = copy_elemset(mpl, value);
^~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4376:21: note: initialize the variable 'value' to silence this warning
{ ELEMSET *value;
^
= NULL
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4619:15: warning: variable 'value' is used uninitialized whenever switch case is taken [-Wsometimes-uninitialized]
case O_SETOF:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl.h:2176:25: note: expanded from macro 'O_SETOF'
#define O_SETOF 384 /* compute elemental set */
^~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4640:14: note: uninitialized use occurs here
return value;
^~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4637:10: warning: variable 'value' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4640:14: note: uninitialized use occurs here
return value;
^~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4506:16: note: initialize the variable 'value' to silence this warning
{ int value;
^
= 0
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4810:10: warning: variable 'value' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4816:44: note: uninitialized use occurs here
code->value.form = copy_formula(mpl, value);
^~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4701:21: note: initialize the variable 'value' to silence this warning
{ FORMULA *value;
^
= NULL
13 warnings generated.
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/mpl/mpl4.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl4.c:919:10: warning: variable 'kind' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl4.c:922:14: note: uninitialized use occurs here
return kind;
^~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl4.c:906:15: note: initialize the variable 'kind' to silence this warning
{ int kind;
^
= 0
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl4.c:1155:10: warning: variable 'kind' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl4.c:1158:14: note: uninitialized use occurs here
return kind;
^~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl4.c:1142:15: note: initialize the variable 'kind' to silence this warning
{ int kind;
^
= 0
2 warnings generated.
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/mpl/mpl5.c.o
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/mpl/mpl6.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c:687:17: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
for (j = j; j < 11; j++)
~ ^ ~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c:854:20: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
for (j = j; j < dbf->len[k]; j++)
~ ^ ~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c:976:10: warning: variable 'ret' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c:979:11: note: uninitialized use occurs here
if (ret > 0)
^~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c:962:14: note: initialize the variable 'ret' to silence this warning
int ret;
^
= 0
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c:1001:10: warning: variable 'ret' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c:1004:11: note: uninitialized use occurs here
if (ret)
^~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c:987:14: note: initialize the variable 'ret' to silence this warning
int ret;
^
= 0
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c:1026:10: warning: variable 'ret' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c:1031:11: note: uninitialized use occurs here
if (ret)
^~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c:1012:14: note: initialize the variable 'ret' to silence this warning
int ret;
^
= 0
5 warnings generated.
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/mpl/mplsql.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mplsql.c:41:14: warning: unused function 'db_iodbc_open_int' [-Wunused-function]
static void *db_iodbc_open_int(TABDCA *dca, int mode, const char
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mplsql.c:43:14: warning: unused function 'db_mysql_open_int' [-Wunused-function]
static void *db_mysql_open_int(TABDCA *dca, int mode, const char
^
2 warnings generated.
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/npp/npp1.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp1.c:367:16: warning: variable 'dir' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if (npp->orig_dir == GLP_MAX)
^~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp1.c:382:17: note: uninitialized use occurs here
npp->c0 = dir * orig->c0;
^~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp1.c:367:12: note: remove the 'if' if its condition is always true
else if (npp->orig_dir == GLP_MAX)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp1.c:359:17: note: initialize the variable 'dir' to silence this warning
double dir;
^
= 0.0
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp1.c:498:16: warning: variable 'dir' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if (npp->orig_dir == GLP_MAX)
^~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp1.c:502:33: note: uninitialized use occurs here
glp_set_obj_coef(prob, 0, dir * npp->c0);
^~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp1.c:498:12: note: remove the 'if' if its condition is always true
else if (npp->orig_dir == GLP_MAX)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp1.c:491:17: note: initialize the variable 'dir' to silence this warning
double dir, *val;
^
= 0.0
2 warnings generated.
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/npp/npp2.c.o
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/npp/npp3.c.o
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/npp/npp4.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp4.c:724:16: warning: variable 'ptr' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if (which == 1)
^~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp4.c:731:16: note: uninitialized use occurs here
for (e = ptr; e != NULL; e = e->next)
^~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp4.c:724:12: note: remove the 'if' if its condition is always true
else if (which == 1)
^~~~~~~~~~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp4.c:715:23: note: initialize the variable 'ptr' to silence this warning
{ struct elem *ptr, *e, *i, *k;
^
= NULL
1 warning generated.
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/npp/npp5.c.o
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/npp/npp6.c.o
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/proxy/proxy.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/proxy/proxy.c:952:17: warning: variable 'tela' set but not used [-Wunused-but-set-variable]
double val, tela, tlimit;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/proxy/proxy.c:952:23: warning: unused variable 'tlimit' [-Wunused-variable]
double val, tela, tlimit;
^
2 warnings generated.
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/proxy/proxy1.c.o
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/simplex/spxat.c.o
[ 55%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/simplex/spxchuzc.c.o
[ 55%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/simplex/spxchuzr.c.o
[ 55%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/simplex/spxlp.c.o
[ 55%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/simplex/spxnt.c.o
[ 55%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/simplex/spxprim.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprim.c:1078:10: warning: variable 'nnn' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprim.c:1083:62: note: uninitialized use occurs here
csa->phase == 2 ? '*' : ' ', csa->it_cnt, obj, sum, nnn);
^~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprim.c:1021:14: note: initialize the variable 'nnn' to silence this warning
{ int nnn, k;
^
= 0
1 warning generated.
[ 55%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/simplex/spxprob.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprob.c:163:10: warning: variable 'dir' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized]
default:
^~~~~~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprob.c:167:14: note: uninitialized use occurs here
c[0] = dir * P->c0;
^~~
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprob.c:154:17: note: initialize the variable 'dir' to silence this warning
double dir, delta;
^
= 0.0
1 warning generated.
[ 55%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/simplex/spychuzc.c.o
[ 55%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/simplex/spychuzr.c.o
[ 55%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/simplex/spydual.c.o
[ 55%] Built target glpk_vendored
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dnaupd.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dnaupd.c:473:29: warning: variable 'levec' set but not used [-Wunused-but-set-variable]
IGRAPH_F77_SAVE integer levec;
^
1 warning generated.
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dnaup2.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dnaup2.c:241:26: warning: variable 'tnaup2' set but not used [-Wunused-but-set-variable]
IGRAPH_F77_SAVE real tnaup2;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dnaup2.c:233:26: warning: variable 'tmvbx' set but not used [-Wunused-but-set-variable]
IGRAPH_F77_SAVE real tmvbx;
^
2 warnings generated.
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dgetv0.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dgetv0.c:176:10: warning: variable 'tgetv0' set but not used [-Wunused-but-set-variable]
real tgetv0 = 0;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dgetv0.c:183:10: warning: variable 'tmvopx' set but not used [-Wunused-but-set-variable]
real tmvopx = 0;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dgetv0.c:172:10: warning: variable 'tmvbx' set but not used [-Wunused-but-set-variable]
real tmvbx = 0;
^
3 warnings generated.
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dvout.c.o
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/second.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/second.c:17:10: warning: variable 't1' set but not used [-Wunused-but-set-variable]
real t1;
^
1 warning generated.
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dmout.c.o
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dnaitr.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dnaitr.c:279:10: warning: variable 'tmvbx' set but not used [-Wunused-but-set-variable]
real tmvbx = 0;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dnaitr.c:296:10: warning: variable 'titref' set but not used [-Wunused-but-set-variable]
real titref = 0, tnaitr = 0;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dnaitr.c:296:22: warning: variable 'tnaitr' set but not used [-Wunused-but-set-variable]
real titref = 0, tnaitr = 0;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dnaitr.c:302:10: warning: variable 'tmvopx' set but not used [-Wunused-but-set-variable]
real tmvopx = 0;
^
4 warnings generated.
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/ivout.c.o
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dnapps.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dnapps.c:219:10: warning: variable 'tnapps' set but not used [-Wunused-but-set-variable]
real tnapps = 0.;
^
1 warning generated.
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dnconv.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dnconv.c:99:10: warning: variable 'tnconv' set but not used [-Wunused-but-set-variable]
real tnconv = 0.;
^
1 warning generated.
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dneigh.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dneigh.c:152:10: warning: variable 'tneigh' set but not used [-Wunused-but-set-variable]
real tneigh = 0.;
^
1 warning generated.
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dlaqrb.c.o
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dngets.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dngets.c:133:10: warning: variable 'tngets' set but not used [-Wunused-but-set-variable]
real tngets = 0.;
^
1 warning generated.
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dsortc.c.o
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dstatn.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:34:13: warning: variable 'nbx' set but not used [-Wunused-but-set-variable]
integer nbx, nopx;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:34:18: warning: variable 'nopx' set but not used [-Wunused-but-set-variable]
integer nbx, nopx;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:35:10: warning: variable 'trvec' set but not used [-Wunused-but-set-variable]
real trvec, tmvbx, tnaup2, tgetv0, tneigh;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:35:17: warning: variable 'tmvbx' set but not used [-Wunused-but-set-variable]
real trvec, tmvbx, tnaup2, tgetv0, tneigh;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:35:24: warning: variable 'tnaup2' set but not used [-Wunused-but-set-variable]
real trvec, tmvbx, tnaup2, tgetv0, tneigh;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:35:32: warning: variable 'tgetv0' set but not used [-Wunused-but-set-variable]
real trvec, tmvbx, tnaup2, tgetv0, tneigh;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:35:40: warning: variable 'tneigh' set but not used [-Wunused-but-set-variable]
real trvec, tmvbx, tnaup2, tgetv0, tneigh;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:36:13: warning: variable 'nitref' set but not used [-Wunused-but-set-variable]
integer nitref;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:37:10: warning: variable 'tnaupd' set but not used [-Wunused-but-set-variable]
real tnaupd, titref, tnaitr, tngets, tnapps, tnconv;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:37:18: warning: variable 'titref' set but not used [-Wunused-but-set-variable]
real tnaupd, titref, tnaitr, tngets, tnapps, tnconv;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:37:26: warning: variable 'tnaitr' set but not used [-Wunused-but-set-variable]
real tnaupd, titref, tnaitr, tngets, tnapps, tnconv;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:37:34: warning: variable 'tngets' set but not used [-Wunused-but-set-variable]
real tnaupd, titref, tnaitr, tngets, tnapps, tnconv;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:37:42: warning: variable 'tnapps' set but not used [-Wunused-but-set-variable]
real tnaupd, titref, tnaitr, tngets, tnapps, tnconv;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:37:50: warning: variable 'tnconv' set but not used [-Wunused-but-set-variable]
real tnaupd, titref, tnaitr, tngets, tnapps, tnconv;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:38:13: warning: variable 'nrorth' set but not used [-Wunused-but-set-variable]
integer nrorth, nrstrt;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:38:21: warning: variable 'nrstrt' set but not used [-Wunused-but-set-variable]
integer nrorth, nrstrt;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:39:10: warning: variable 'tmvopx' set but not used [-Wunused-but-set-variable]
real tmvopx;
^
17 warnings generated.
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dneupd.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dneupd.c:349:13: warning: variable 'iwev' set but not used [-Wunused-but-set-variable]
integer iwev;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dneupd.c:341:23: warning: variable 'wrr' set but not used [-Wunused-but-set-variable]
integer irr, wri, wrr;
^
2 warnings generated.
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dsaupd.c.o
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dsaup2.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dsaup2.c:251:10: warning: variable 'tsaup2' set but not used [-Wunused-but-set-variable]
real tsaup2;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dsaup2.c:244:10: warning: variable 'tmvbx' set but not used [-Wunused-but-set-variable]
real tmvbx = 0.0;
^
2 warnings generated.
[ 58%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dsaitr.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dsaitr.c:266:10: warning: variable 'tmvbx' set but not used [-Wunused-but-set-variable]
real tmvbx = 0;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dsaitr.c:282:10: warning: variable 'titref' set but not used [-Wunused-but-set-variable]
real titref = 0;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dsaitr.c:285:10: warning: variable 'tsaitr' set but not used [-Wunused-but-set-variable]
real tsaitr = 0;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dsaitr.c:289:10: warning: variable 'tmvopx' set but not used [-Wunused-but-set-variable]
real tmvopx = 0;
^
4 warnings generated.
[ 58%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dsapps.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dsapps.c:190:10: warning: variable 'tsapps' set but not used [-Wunused-but-set-variable]
real tsapps = 0;
^
1 warning generated.
[ 58%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dsconv.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dsconv.c:93:10: warning: variable 'tsconv' set but not used [-Wunused-but-set-variable]
real tsconv = 0;
^
1 warning generated.
[ 58%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dseigt.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dseigt.c:122:10: warning: variable 'tseigt' set but not used [-Wunused-but-set-variable]
real tseigt = 0.0;
^
1 warning generated.
[ 58%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dstqrb.c.o
[ 58%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dsgets.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dsgets.c:130:10: warning: variable 'tsgets' set but not used [-Wunused-but-set-variable]
real tsgets = 0.0;
^
1 warning generated.
[ 58%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dsortr.c.o
[ 58%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dstats.c.o
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:24:13: warning: variable 'nbx' set but not used [-Wunused-but-set-variable]
integer nbx, nopx;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:24:18: warning: variable 'nopx' set but not used [-Wunused-but-set-variable]
integer nbx, nopx;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:25:10: warning: variable 'trvec' set but not used [-Wunused-but-set-variable]
real trvec, tmvbx, tgetv0, tsaup2;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:25:17: warning: variable 'tmvbx' set but not used [-Wunused-but-set-variable]
real trvec, tmvbx, tgetv0, tsaup2;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:25:24: warning: variable 'tgetv0' set but not used [-Wunused-but-set-variable]
real trvec, tmvbx, tgetv0, tsaup2;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:25:32: warning: variable 'tsaup2' set but not used [-Wunused-but-set-variable]
real trvec, tmvbx, tgetv0, tsaup2;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:26:13: warning: variable 'nitref' set but not used [-Wunused-but-set-variable]
integer nitref;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:27:10: warning: variable 'titref' set but not used [-Wunused-but-set-variable]
real titref, tseigt, tsaupd, tsaitr, tsgets, tsapps;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:27:18: warning: variable 'tseigt' set but not used [-Wunused-but-set-variable]
real titref, tseigt, tsaupd, tsaitr, tsgets, tsapps;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:27:26: warning: variable 'tsaupd' set but not used [-Wunused-but-set-variable]
real titref, tseigt, tsaupd, tsaitr, tsgets, tsapps;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:27:34: warning: variable 'tsaitr' set but not used [-Wunused-but-set-variable]
real titref, tseigt, tsaupd, tsaitr, tsgets, tsapps;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:27:42: warning: variable 'tsgets' set but not used [-Wunused-but-set-variable]
real titref, tseigt, tsaupd, tsaitr, tsgets, tsapps;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:27:50: warning: variable 'tsapps' set but not used [-Wunused-but-set-variable]
real titref, tseigt, tsaupd, tsaitr, tsgets, tsapps;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:28:13: warning: variable 'nrorth' set but not used [-Wunused-but-set-variable]
integer nrorth;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:29:10: warning: variable 'tsconv' set but not used [-Wunused-but-set-variable]
real tsconv;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:30:13: warning: variable 'nrstrt' set but not used [-Wunused-but-set-variable]
integer nrstrt;
^
/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:31:10: warning: variable 'tmvopx' set but not used [-Wunused-but-set-variable]
real tmvopx;
^
17 warnings generated.
[ 58%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dseupd.c.o
[ 58%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dsesrt.c.o
[ 58%] Built target arpack_vendored
[ 58%] Building C object vendor/mini-gmp/CMakeFiles/gmp_vendored.dir/mini-gmp.c.o
[ 58%] Built target gmp_vendored
[ 58%] Building C object vendor/pcg/CMakeFiles/pcg.dir/pcg-advance-64.c.o
[ 58%] Building C object vendor/pcg/CMakeFiles/pcg.dir/pcg-advance-128.c.o
[ 58%] Building C object vendor/pcg/CMakeFiles/pcg.dir/pcg-output-32.c.o
[ 58%] Building C object vendor/pcg/CMakeFiles/pcg.dir/pcg-output-64.c.o
[ 58%] Building C object vendor/pcg/CMakeFiles/pcg.dir/pcg-output-128.c.o
[ 58%] Building C object vendor/pcg/CMakeFiles/pcg.dir/pcg-rngs-64.c.o
[ 58%] Building C object vendor/pcg/CMakeFiles/pcg.dir/pcg-rngs-128.c.o
[ 58%] Built target pcg
[ 58%] Building C object vendor/plfit/CMakeFiles/plfit_vendored.dir/gss.c.o
[ 58%] Building C object vendor/plfit/CMakeFiles/plfit_vendored.dir/hzeta.c.o
[ 61%] Building C object vendor/plfit/CMakeFiles/plfit_vendored.dir/kolmogorov.c.o
[ 61%] Building C object vendor/plfit/CMakeFiles/plfit_vendored.dir/lbfgs.c.o
[ 61%] Building C object vendor/plfit/CMakeFiles/plfit_vendored.dir/mt.c.o
[ 61%] Building C object vendor/plfit/CMakeFiles/plfit_vendored.dir/options.c.o
[ 61%] Building C object vendor/plfit/CMakeFiles/plfit_vendored.dir/platform.c.o
[ 61%] Building C object vendor/plfit/CMakeFiles/plfit_vendored.dir/plfit.c.o
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[100%] Building C object src/CMakeFiles/igraph.dir/version.c.o
[100%] Linking CXX static library libigraph.a
[100%] Built target igraph
[100%] Building C object tests/CMakeFiles/test_utilities.dir/unit/test_utilities.c.o
[100%] Built target test_utilities
-- Install configuration: "Release"
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/lib/libigraph.a
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_conversion.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_attributes.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_coloring.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_bitset.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_decls.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_eulerian.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_centrality.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_vector_type.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_paths.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_stack.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_scan.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_array.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_separators.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_vector_ptr.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_datatype.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_iterators.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_eigen.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_bitset_list.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_foreign.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_strvector.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_hrg.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_embedding.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_neighborhood.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_bipartite.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_nongraph.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_interrupt.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_complex.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_cycles.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_matching.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_heap.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_matrix.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_qsort.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_constants.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_interface.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_cocitation.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_progress.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_reachability.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_flow.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_error.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_psumtree.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_sparsemat.h
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-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_games.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_pmt_off.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_vector_pmt.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_constructors.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_statusbar.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_cohesive_blocks.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_blas.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_vector_list.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_arpack.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_matrix_list.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_matrix_pmt.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_stack_pmt.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_types.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_topology.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_pmt.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_typed_list_pmt.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_array_pmt.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_memory.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_epidemics.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_operators.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_adjlist.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_dqueue.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_mixing.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_visitor.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_graph_list.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_motifs.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_heap_pmt.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_graphlets.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_cliques.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_vector.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_microscopic_update.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_graphicality.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_components.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_lsap.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_random.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_structural.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_lapack.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_dqueue_pmt.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_community.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_transitivity.h
-- Up-to-date: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_export.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_config.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_version.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/include/igraph/igraph_threading.h
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/lib/pkgconfig/igraph.pc
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/lib/cmake/igraph/igraph-config.cmake
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/lib/cmake/igraph/igraph-config-version.cmake
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/lib/cmake/igraph/igraph-targets.cmake
-- Installing: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/igraph/lib/cmake/igraph/igraph-targets-release.cmake
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rigraphlib)
Rigraphlib.Rcheck/Rigraphlib-Ex.timings
| name | user | system | elapsed | |
| pkgconfig | 0.001 | 0.001 | 0.003 | |