This page was generated on 2025-04-24 13:02 -0400 (Thu, 24 Apr 2025).
INSTALL results for MEDME on nebbiolo1
To the developers/maintainers of the MEDME package:
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raw results
Summary
Command output
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### Running command:
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### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL MEDME
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* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘MEDME’ ...
** this is package ‘MEDME’ version ‘1.68.0’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c MEDMEweight.c -o MEDMEweight.o
MEDMEweight.c: In function ‘MEDMEweight’:
MEDMEweight.c:90:33: warning: ‘B’ may be used uninitialized [-Wmaybe-uninitialized]
90 | AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
| ^~~~~~~~
MEDMEweight.c:36:10: note: ‘B’ was declared here
36 | double B,C,D,E, Min, Max, Mlim;
| ^
MEDMEweight.c:89:9: warning: ‘C’ may be used uninitialized [-Wmaybe-uninitialized]
89 | if(Mlim < C) {Mlim = C;}
| ^
MEDMEweight.c:36:12: note: ‘C’ was declared here
36 | double B,C,D,E, Min, Max, Mlim;
| ^
MEDMEweight.c:88:9: warning: ‘D’ may be used uninitialized [-Wmaybe-uninitialized]
88 | if(Mlim > D) {Mlim = D;} // the model is only meaningful for MeDIPw in (C,D)
| ^
MEDMEweight.c:36:14: note: ‘D’ was declared here
36 | double B,C,D,E, Min, Max, Mlim;
| ^
MEDMEweight.c:90:33: warning: ‘E’ may be used uninitialized [-Wmaybe-uninitialized]
90 | AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
| ^~~~~~~~
MEDMEweight.c:36:16: note: ‘E’ was declared here
36 | double B,C,D,E, Min, Max, Mlim;
| ^
MEDMEweight.c:92:9: warning: ‘Min’ may be used uninitialized [-Wmaybe-uninitialized]
92 | if(AMSfinal[i] < Min) {AMSfinal[i] = Min;}
| ^
MEDMEweight.c:36:19: note: ‘Min’ was declared here
36 | double B,C,D,E, Min, Max, Mlim;
| ^~~
MEDMEweight.c:91:9: warning: ‘Max’ may be used uninitialized [-Wmaybe-uninitialized]
91 | if(AMSfinal[i] > Max) {AMSfinal[i] = Max;}
| ^
MEDMEweight.c:36:24: note: ‘Max’ was declared here
36 | double B,C,D,E, Min, Max, Mlim;
| ^~~
MEDMEweight.c:78:19: warning: ‘weight’ may be used uninitialized [-Wmaybe-uninitialized]
78 | weightSum = weightSum + weight;
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
MEDMEweight.c:30:10: note: ‘weight’ was declared here
30 | double weight, relPos;
| ^~~~~~
gcc -std=gnu2x -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o MEDME.so MEDMEweight.o -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.21-bioc/R/site-library/00LOCK-MEDME/00new/MEDME/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MEDME)