Koustav Pal
| Snapshot Date: 2025-04-21 13:40 -0400 (Mon, 21 Apr 2025) |
| git_url: https://git.bioconductor.org/packages/HiCBricks |
| git_branch: RELEASE_3_21 |
| git_last_commit: 773bb6b |
| git_last_commit_date: 2025-04-15 11:38:17 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-04-22 13:14 -0400 (Tue, 22 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4831 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" | 4573 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4599 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4553 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4570 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 970/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HiCBricks 1.26.0 (landing page) Koustav Pal
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the HiCBricks package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCBricks.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HiCBricks |
| Version: 1.26.0 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HiCBricks.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings HiCBricks_1.26.0.tar.gz |
| StartedAt: 2025-04-22 02:59:47 -0400 (Tue, 22 Apr 2025) |
| EndedAt: 2025-04-22 03:04:51 -0400 (Tue, 22 Apr 2025) |
| EllapsedTime: 304.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HiCBricks.Rcheck |
| Warnings: 0 |
##############################################################################
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###
### Running command:
###
### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HiCBricks.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings HiCBricks_1.26.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/HiCBricks.Rcheck'
* using R version 4.5.0 RC (2025-04-04 r88126 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'HiCBricks/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HiCBricks' version '1.26.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HiCBricks' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
Brick_export_to_sparse 3.05 0.49 6.02
Brick_vizart_plot_heatmap 2.47 0.47 5.80
Brick_local_score_differentiator 2.33 0.27 5.01
BrickContainer_unlink_resolution 2.26 0.20 7.64
Brick_add_ranges 2.28 0.17 5.68
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
HiCBricks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL HiCBricks ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library' * installing *source* package 'HiCBricks' ... ** this is package 'HiCBricks' version '1.26.0' ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCBricks)
HiCBricks.Rcheck/HiCBricks-Ex.timings
| name | user | system | elapsed | |
| BrickContainer_change_experiment_name | 1.59 | 0.21 | 3.40 | |
| BrickContainer_change_output_directory | 1.06 | 0.11 | 3.44 | |
| BrickContainer_get_path_to_file | 1.10 | 0.12 | 3.44 | |
| BrickContainer_list_chromosomes | 1.11 | 0.14 | 3.70 | |
| BrickContainer_list_experiment_name | 0.84 | 0.22 | 3.05 | |
| BrickContainer_list_files | 1.05 | 0.15 | 3.28 | |
| BrickContainer_list_output_directory | 1.00 | 0.16 | 3.36 | |
| BrickContainer_list_resolutions | 1.14 | 0.08 | 3.15 | |
| BrickContainer_unlink_resolution | 2.26 | 0.20 | 7.64 | |
| Brick_add_ranges | 2.28 | 0.17 | 5.68 | |
| Brick_call_compartments | 1.66 | 0.34 | 4.55 | |
| Brick_export_to_sparse | 3.05 | 0.49 | 6.02 | |
| Brick_fetch_range_index | 1.22 | 0.12 | 3.16 | |
| Brick_fetch_row_vector | 1.76 | 0.27 | 4.47 | |
| Brick_get_bintable | 1.19 | 0.14 | 3.89 | |
| Brick_get_chrominfo | 1.05 | 0.11 | 3.15 | |
| Brick_get_entire_matrix | 1.37 | 0.33 | 4.28 | |
| Brick_get_matrix | 1.66 | 0.15 | 4.46 | |
| Brick_get_matrix_mcols | 1.18 | 0.19 | 3.67 | |
| Brick_get_matrix_within_coords | 2.13 | 0.30 | 4.59 | |
| Brick_get_ranges | 1.00 | 0.12 | 3.10 | |
| Brick_get_values_by_distance | 1.66 | 0.19 | 4.16 | |
| Brick_get_vector_values | 1.21 | 0.24 | 3.85 | |
| Brick_list_matrices | 1.16 | 0.12 | 4.53 | |
| Brick_list_matrix_mcols | 0.94 | 0.08 | 3.42 | |
| Brick_list_mcool_normalisations | 0 | 0 | 0 | |
| Brick_list_mcool_resolutions | 0 | 0 | 0 | |
| Brick_list_rangekeys | 0.97 | 0.20 | 3.08 | |
| Brick_list_ranges_mcols | 1.11 | 0.11 | 4.08 | |
| Brick_load_cis_matrix_till_distance | 1.39 | 0.20 | 4.10 | |
| Brick_load_data_from_mcool | 0 | 0 | 0 | |
| Brick_load_data_from_sparse | 0 | 0 | 0 | |
| Brick_load_matrix | 1.30 | 0.22 | 4.08 | |
| Brick_local_score_differentiator | 2.33 | 0.27 | 5.01 | |
| Brick_make_ranges | 0.01 | 0.00 | 0.01 | |
| Brick_matrix_dimensions | 1.28 | 0.31 | 3.95 | |
| Brick_matrix_exists | 1.34 | 0.41 | 4.03 | |
| Brick_matrix_filename | 1.38 | 0.34 | 3.85 | |
| Brick_matrix_isdone | 1.39 | 0.25 | 3.98 | |
| Brick_matrix_issparse | 1.39 | 0.30 | 4.03 | |
| Brick_matrix_maxdist | 1.30 | 0.20 | 3.62 | |
| Brick_matrix_minmax | 1.31 | 0.24 | 4.06 | |
| Brick_mcool_normalisation_exists | 0 | 0 | 0 | |
| Brick_rangekey_exists | 0.94 | 0.14 | 3.64 | |
| Brick_return_region_position | 1.26 | 0.12 | 3.37 | |
| Brick_vizart_plot_heatmap | 2.47 | 0.47 | 5.80 | |
| Create_many_Bricks | 1.13 | 0.14 | 3.65 | |
| Create_many_Bricks_from_mcool | 0 | 0 | 0 | |
| load_BrickContainer | 1.12 | 0.19 | 3.89 | |