Aaron Lun
| Snapshot Date: 2025-04-24 15:01 -0400 (Thu, 24 Apr 2025) |
| git_url: https://git.bioconductor.org/packages/DelayedRandomArray |
| git_branch: RELEASE_3_21 |
| git_last_commit: 7030e8b |
| git_last_commit_date: 2025-04-15 12:28:04 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-04-28 13:01 -0400 (Mon, 28 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4832 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" | 4574 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4558 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.0 RC (2025-04-04 r88129) -- "How About a Twenty-Six" | 4553 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 547/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DelayedRandomArray 1.16.0 (landing page) Aaron Lun
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | ERROR | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | ERROR | |||||||||
|
To the developers/maintainers of the DelayedRandomArray package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DelayedRandomArray.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: DelayedRandomArray |
| Version: 1.16.0 |
| Command: rm -rf DelayedRandomArray.buildbin-libdir && mkdir DelayedRandomArray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DelayedRandomArray_1.16.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R DelayedRandomArray.buildbin-libdir |
| StartedAt: 2025-04-26 16:57:16 -0400 (Sat, 26 Apr 2025) |
| EndedAt: 2025-04-26 16:57:55 -0400 (Sat, 26 Apr 2025) |
| EllapsedTime: 38.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf DelayedRandomArray.buildbin-libdir && mkdir DelayedRandomArray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DelayedRandomArray_1.16.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R DelayedRandomArray.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=DelayedRandomArray.buildbin-libdir DelayedRandomArray_1.16.0.tar.gz' >>>>>>> * installing *source* package ‘DelayedRandomArray’ ... ** this is package ‘DelayedRandomArray’ version ‘1.16.0’ ** using staged installation ** libs using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’ using C++11 using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/dqrng/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/dqrng/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c index_server.cpp -o index_server.o clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/dqrng/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c recycle_vector.cpp -o recycle_vector.o clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/dqrng/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sample_standard_uniform.cpp -o sample_standard_uniform.o clang++ -arch arm64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o DelayedRandomArray.so RcppExports.o index_server.o recycle_vector.o sample_standard_uniform.o -F/Library/Frameworks/R.framework/.. -framework R installing to /Users/biocbuild/bbs-3.21-bioc/meat/DelayedRandomArray.buildbin-libdir/00LOCK-DelayedRandomArray/00new/DelayedRandomArray/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DelayedRandomArray) >>>>>>> >>>>>>> FIXING PATHS TO DYNAMIC LIBRARIES FOR DelayedRandomArray.buildbin-libdir/DelayedRandomArray/libs/DelayedRandomArray.so >>>>>>> >>>>>>> Paths before fix: DelayedRandomArray.buildbin-libdir/DelayedRandomArray/libs/DelayedRandomArray.so: DelayedRandomArray.so (compatibility version 0.0.0, current version 0.0.0) /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libR.dylib (compatibility version 4.5.0, current version 4.5.0) /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 905.6.0) /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5) >>>>>>> Fix with install_name_tool: install_name_tool -change "/usr/local/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libgcc_s.1.1.dylib" "DelayedRandomArray.buildbin-libdir/DelayedRandomArray/libs/DelayedRandomArray.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libgfortran.5.dylib" "DelayedRandomArray.buildbin-libdir/DelayedRandomArray/libs/DelayedRandomArray.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libquadmath.0.dylib" "DelayedRandomArray.buildbin-libdir/DelayedRandomArray/libs/DelayedRandomArray.so" >>>>>>> Paths after fix: DelayedRandomArray.buildbin-libdir/DelayedRandomArray/libs/DelayedRandomArray.so: DelayedRandomArray.so (compatibility version 0.0.0, current version 0.0.0) /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libR.dylib (compatibility version 4.5.0, current version 4.5.0) /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 905.6.0) /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5) chown: DelayedRandomArray.buildbin-libdir/DelayedRandomArray/NEWS.Rd: Operation not permitted chown: DelayedRandomArray.buildbin-libdir/DelayedRandomArray/R/DelayedRandomArray.rdb: Operation not permitted chown: DelayedRandomArray.buildbin-libdir/DelayedRandomArray/R/DelayedRandomArray.rdx: Operation not permitted 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