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This page was generated on 2025-04-18 11:45 -0400 (Fri, 18 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4831
palomino7Windows Server 2022 Datacenterx644.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" 4573
lconwaymacOS 12.7.1 Montereyx86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4599
kjohnson3macOS 13.7.1 Venturaarm644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4553
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4570
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 377/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CluMSID 1.24.0  (landing page)
Tobias Depke
Snapshot Date: 2025-04-17 13:40 -0400 (Thu, 17 Apr 2025)
git_url: https://git.bioconductor.org/packages/CluMSID
git_branch: RELEASE_3_21
git_last_commit: 4ebdb54
git_last_commit_date: 2025-04-15 11:40:07 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    WARNINGS  

BUILD results for CluMSID on kjohnson3

To the developers/maintainers of the CluMSID package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CluMSID.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: CluMSID
Version: 1.24.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CluMSID
StartedAt: 2025-04-17 15:55:20 -0400 (Thu, 17 Apr 2025)
EndedAt: 2025-04-17 15:56:57 -0400 (Thu, 17 Apr 2025)
EllapsedTime: 97.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CluMSID
###
##############################################################################
##############################################################################


* checking for file ‘CluMSID/DESCRIPTION’ ... OK
* preparing ‘CluMSID’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CluMSID_DI-MSMS.Rmd’ using rmarkdown
2025-04-17 15:55:49.687 R[11812:972867444] XType: Using static font registry.
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "CluMSID DI-MS/MS Tutorial", and the latter is "Clustering Spectra from High Resolution DI-MS/MS Data Using CluMSID". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘CluMSID_DI-MSMS.Rmd’

--- re-building ‘CluMSID_GC-EI-MS.Rmd’ using rmarkdown

Quitting from CluMSID_GC-EI-MS.Rmd:97-103 [packages]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'metaMS'
---
Backtrace:
    ▆
 1. └─base::library(metaMS)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'CluMSID_GC-EI-MS.Rmd' failed with diagnostics:
there is no package called 'metaMS'
--- failed re-building ‘CluMSID_GC-EI-MS.Rmd’

--- re-building ‘CluMSID_MTBLS.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "CluMSID MTBLS Tutorial", and the latter is "Using CluMSID with a Publicly Available MetaboLights Data Set". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘CluMSID_MTBLS.Rmd’

--- re-building ‘CluMSID_lowres-LC-MSMS.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "CluMSID LowRes Tutorial", and the latter is "Clustering Mass Spectra from Low Resolution LC-MS/MS Data Using CluMSID". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘CluMSID_lowres-LC-MSMS.Rmd’

--- re-building ‘CluMSID_tutorial.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "CluMSID Tutorial", and the latter is "CluMSID --- Clustering of MS^2^ Spectra for Metabolite Identification". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘CluMSID_tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘CluMSID_GC-EI-MS.Rmd’

Error: Vignette re-building failed.
Execution halted