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This page was generated on 2025-05-01 11:41 -0400 (Thu, 01 May 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4832
palomino7Windows Server 2022 Datacenterx644.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" 4574
merida1macOS 12.7.5 Montereyx86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4599
kjohnson1macOS 13.6.6 Venturaarm644.5.0 RC (2025-04-04 r88129) -- "How About a Twenty-Six" 4553
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 280/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CATALYST 1.32.0  (landing page)
Helena L. Crowell
Snapshot Date: 2025-04-28 17:48 -0400 (Mon, 28 Apr 2025)
git_url: https://git.bioconductor.org/packages/CATALYST
git_branch: RELEASE_3_21
git_last_commit: e5841ae
git_last_commit_date: 2025-04-15 11:10:22 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for CATALYST on merida1

To the developers/maintainers of the CATALYST package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CATALYST.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: CATALYST
Version: 1.32.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CATALYST
StartedAt: 2025-04-28 21:07:48 -0400 (Mon, 28 Apr 2025)
EndedAt: 2025-04-28 21:13:47 -0400 (Mon, 28 Apr 2025)
EllapsedTime: 359.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CATALYST
###
##############################################################################
##############################################################################


* checking for file ‘CATALYST/DESCRIPTION’ ... OK
* preparing ‘CATALYST’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘differential.Rmd’ using rmarkdown
2025-04-28 21:09:46.265 R[44531:23857932] XType: com.apple.fonts is not accessible.
2025-04-28 21:09:46.266 R[44531:23857932] XType: XTFontStaticRegistry is enabled.
--- finished re-building ‘differential.Rmd’

--- re-building ‘preprocessing.Rmd’ using rmarkdown

Quitting from preprocessing.Rmd:515-545 [sce2fcs-gating]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'openCyto'
---
Backtrace:
    ▆
 1. └─base::library(openCyto)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'preprocessing.Rmd' failed with diagnostics:
there is no package called 'openCyto'
--- failed re-building ‘preprocessing.Rmd’

SUMMARY: processing the following file failed:
  ‘preprocessing.Rmd’

Error: Vignette re-building failed.
Execution halted