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### Running command:
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### chmod a+r BRAIN -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BRAIN
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* checking for file 'BRAIN/DESCRIPTION' ... OK
* preparing 'BRAIN':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'BRAIN-vignette.Rnw' using Sweave
Loading required package: PolynomF
Loading required package: Biostrings
Loading required package: BiocGenerics
Loading required package: generics
Attaching package: 'generics'
The following objects are masked from 'package:base':
as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
setequal, union
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
unsplit, which.max, which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: 'S4Vectors'
The following object is masked from 'package:utils':
findMatches
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
Loading required package: XVector
Loading required package: GenomeInfoDb
Attaching package: 'Biostrings'
The following object is masked from 'package:base':
strsplit
Loading required package: lattice
Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 1033
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", :
running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "BRAIN-vignette.tex" ' had status 1033
Error: processing vignette 'BRAIN-vignette.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'BRAIN-vignette.pdf' for vignette with name 'BRAIN-vignette' and engine 'utils::Sweave'. The following files exist in working directory 'E:\biocbuild\bbs-3.21-bioc\tmpdir\Rtmp2nFbnl\Rbuild8b401c461938\BRAIN\vignettes': 'BRAIN-vignette-006.pdf' (4542 bytes), 'BRAIN-vignette-007.pdf' (7087 bytes), 'BRAIN-vignette-014.pdf' (6997 bytes), 'BRAIN-vignette-015.pdf' (14249 bytes), 'BRAIN-vignette-017.pdf' (6561 bytes), 'BRAIN-vignette.Rnw' (20379 bytes), 'BRAIN-vignette.tex' (25630 bytes), 'Rplots.pdf' (0 bytes)
--- failed re-building 'BRAIN-vignette.Rnw'
SUMMARY: processing the following file failed:
'BRAIN-vignette.Rnw'
Error: Vignette re-building failed.
Execution halted