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This page was generated on 2025-04-28 13:01 -0400 (Mon, 28 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4832
palomino7Windows Server 2022 Datacenterx644.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" 4574
merida1macOS 12.7.5 Montereyx86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4558
kjohnson1macOS 13.6.6 Venturaarm644.5.0 RC (2025-04-04 r88129) -- "How About a Twenty-Six" 4553
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 76/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AnnotationHubData 1.38.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2025-04-24 15:01 -0400 (Thu, 24 Apr 2025)
git_url: https://git.bioconductor.org/packages/AnnotationHubData
git_branch: RELEASE_3_21
git_last_commit: 3970916
git_last_commit_date: 2025-04-15 10:53:13 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    WARNINGS    ERROR  
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    ERROR  

BUILD BIN results for AnnotationHubData on kjohnson1

To the developers/maintainers of the AnnotationHubData package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AnnotationHubData.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: AnnotationHubData
Version: 1.38.0
Command: rm -rf AnnotationHubData.buildbin-libdir && mkdir AnnotationHubData.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh AnnotationHubData_1.38.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R AnnotationHubData.buildbin-libdir
StartedAt: 2025-04-26 16:12:36 -0400 (Sat, 26 Apr 2025)
EndedAt: 2025-04-26 16:13:30 -0400 (Sat, 26 Apr 2025)
EllapsedTime: 53.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf AnnotationHubData.buildbin-libdir && mkdir AnnotationHubData.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh AnnotationHubData_1.38.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R AnnotationHubData.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=AnnotationHubData.buildbin-libdir AnnotationHubData_1.38.0.tar.gz'
>>>>>>> 

* installing *source* package ‘AnnotationHubData’ ...
** this is package ‘AnnotationHubData’ version ‘1.38.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package ‘rtracklayer’ for request: ‘trackName<-’ when loading ‘AnnotationHubData’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package ‘rtracklayer’ for request: ‘trackName<-’ when loading ‘AnnotationHubData’
** testing if installed package can be loaded from final location
No methods found in package ‘rtracklayer’ for request: ‘trackName<-’ when loading ‘AnnotationHubData’
** testing if installed package keeps a record of temporary installation path
* DONE (AnnotationHubData)


chown: AnnotationHubData.buildbin-libdir/AnnotationHubData/extdata/haemCodeFileList.txt: Operation not permitted
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chown: AnnotationHubData.buildbin-libdir/AnnotationHubData/extdata/badUCSCTracks/allBadTracks.rda: Operation not permitted
chown: AnnotationHubData.buildbin-libdir/AnnotationHubData/extdata/badUCSCTracks/allPossibleTracks.rda: Operation not permitted
chown: AnnotationHubData.buildbin-libdir/AnnotationHubData/extdata/badUCSCTracks: Operation not permitted
chown: AnnotationHubData.buildbin-libdir/AnnotationHubData/extdata/annotation_haemcode.tsv: Operation not permitted
chown: AnnotationHubData.buildbin-libdir/AnnotationHubData/extdata/inpDrosPsuedo.rda: Operation not permitted
chown: AnnotationHubData.buildbin-libdir/AnnotationHubData/extdata: Operation not permitted
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chown: AnnotationHubData.buildbin-libdir/AnnotationHubData/unitTests/test_ImportPreparer-class.R: Operation not permitted
chown: AnnotationHubData.buildbin-libdir/AnnotationHubData/unitTests/test_validityFunctions.R: Operation not permitted
chown: AnnotationHubData.buildbin-libdir/AnnotationHubData/unitTests/cases/encodeDCCMetadata/tbl.parsedEncodeMetadata.RData: Operation not permitted
chown: AnnotationHubData.buildbin-libdir/AnnotationHubData/unitTests/cases/encodeDCCMetadata/wgEncodeAffyRnaChip.info: Operation not permitted
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chown: AnnotationHubData.buildbin-libdir/AnnotationHubData/unitTests/test_AnnotationHubConstructor.R: Operation not permitted
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chown: AnnotationHubData.buildbin-libdir/AnnotationHubData/scripts/singleContributedResourceTemplate.R: Operation not permitted
chown: AnnotationHubData.buildbin-libdir/AnnotationHubData/scripts/oldVignettes/AnnotationHubRecipes.Rmd: Operation not permitted
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