Multiple platform build/check report for BioC 3.21 - BUILD results for ACME on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six"	4667
palomino7	Windows Server 2022 Datacenter	x64	4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six"	4573
lconway	macOS 12.7.1 Monterey	x86_64	4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six"	4599
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six"	4553
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4570
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for ACME on kunpeng2

To the developers/maintainers of the ACME package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ACME.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: ACME

Version: 2.64.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data ACME

StartedAt: 2025-04-16 20:32:50 -0000 (Wed, 16 Apr 2025)

EndedAt: 2025-04-16 20:32:51 -0000 (Wed, 16 Apr 2025)

EllapsedTime: 1.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data ACME
###
##############################################################################
##############################################################################


* checking for file ‘ACME/DESCRIPTION’ ... OK
* preparing ‘ACME’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘ACME’ ...
** this is package ‘ACME’ version ‘2.64.0’
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c windowChisq.c -o windowChisq.o
windowChisq.c: In function ‘windowChisq’:
windowChisq.c:58:21: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
   58 |           firstprobe>0) {
      |           ~~~~~~~~~~^~
windowChisq.c:63:20: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
   63 |           lastprobe<(na-1)) {
      |           ~~~~~~~~~^~~~~~~
windowChisq.c:21:11: warning: unused variable ‘xa’ [-Wunused-variable]
   21 |   double *xa,*xlocations,*xchivals;
      |           ^~
windowChisq.c: At top level:
windowChisq.c:86:20: error: initialization of ‘void * (*)(void)’ from incompatible pointer type ‘struct SEXPREC * (*)(struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *)’ [-Wincompatible-pointer-types]
   86 |     {"windowChisq",&windowChisq,5},
      |                    ^
windowChisq.c:86:20: note: (near initialization for ‘callMethods[0].fun’)
make: *** [/home/biocbuild/R/R/etc/Makeconf:201: windowChisq.o] Error 1
ERROR: compilation failed for package ‘ACME’
* removing ‘/home/biocbuild/tmp/RtmpZX9PYD/Rinst35a9df7d54b3bb/ACME’
      -----------------------------------
ERROR: package installation failed