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This page was generated on 2025-04-05 00:14 -0400 (Sat, 05 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 871
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Package 200/217HostnameOS / ArchINSTALLBUILDCHECK
SummarizedExperiment 1.37.0  (landing page)
Hervé Pagès
Snapshot Date: 2025-04-05 00:00 -0400 (Sat, 05 Apr 2025)
git_url: https://git.bioconductor.org/packages/SummarizedExperiment
git_branch: devel
git_last_commit: cbdaaaa
git_last_commit_date: 2024-10-29 10:01:26 -0400 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for SummarizedExperiment on teran2

To the developers/maintainers of the SummarizedExperiment package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SummarizedExperiment
Version: 1.37.0
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data SummarizedExperiment
StartedAt: 2025-04-05 00:13:36 -0400 (Sat, 05 Apr 2025)
EndedAt: 2025-04-05 00:13:54 -0400 (Sat, 05 Apr 2025)
EllapsedTime: 17.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data SummarizedExperiment
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* checking for file ‘SummarizedExperiment/DESCRIPTION’ ... OK
* preparing ‘SummarizedExperiment’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘SummarizedExperiment’ ...
** this is package ‘SummarizedExperiment’ version ‘1.37.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in (function (n)  :
  internal error 1 in R_decompress1 with libdeflate
Error: package or namespace load failed for ‘SummarizedExperiment’ in (function (n) :
 lazy-load database '/tmp/RtmpgrWtI5/Rinstfdcbd3293e96/00LOCK-SummarizedExperiment/00new/SummarizedExperiment/R/SummarizedExperiment.rdb' is corrupt
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/tmp/RtmpgrWtI5/Rinstfdcbd3293e96/SummarizedExperiment’
      -----------------------------------
ERROR: package installation failed