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This page was generated on 2025-04-07 12:51 -0400 (Mon, 07 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 871
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Package 198/217HostnameOS / ArchINSTALLBUILDCHECK
Spectra 1.17.9  (landing page)
RforMassSpectrometry Package Maintainer
Snapshot Date: 2025-04-07 12:00 -0400 (Mon, 07 Apr 2025)
git_url: https://git.bioconductor.org/packages/Spectra
git_branch: devel
git_last_commit: bac7a3d
git_last_commit_date: 2025-03-07 07:12:05 -0400 (Fri, 07 Mar 2025)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for Spectra on teran2

To the developers/maintainers of the Spectra package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Spectra
Version: 1.17.9
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Spectra
StartedAt: 2025-04-07 12:34:45 -0400 (Mon, 07 Apr 2025)
EndedAt: 2025-04-07 12:34:54 -0400 (Mon, 07 Apr 2025)
EllapsedTime: 9.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Spectra
###
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* checking for file ‘Spectra/DESCRIPTION’ ... OK
* preparing ‘Spectra’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘Spectra’ ...
** this is package ‘Spectra’ version ‘1.17.9’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘entropy’ in package ‘Spectra’
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in .updateMethodsInTable(fdef, where, attach) :
  internal error 1 in R_decompress1 with libdeflate
Error: package or namespace load failed for ‘Spectra’ in .updateMethodsInTable(fdef, where, attach):
 lazy-load database '/tmp/RtmpmkZm4P/Rinst8d5f5224538fd/00LOCK-Spectra/00new/Spectra/R/Spectra.rdb' is corrupt
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/tmp/RtmpmkZm4P/Rinst8d5f5224538fd/Spectra’
      -----------------------------------
ERROR: package installation failed