Back to Rapid builds (Linux only) of a subset of BioC 3.21
Report updated every 6 hours

This page was generated on 2025-04-05 00:14 -0400 (Sat, 05 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 871
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 144/217HostnameOS / ArchINSTALLBUILDCHECK
MsFeatures 1.15.0  (landing page)
Johannes Rainer
Snapshot Date: 2025-04-05 00:00 -0400 (Sat, 05 Apr 2025)
git_url: https://git.bioconductor.org/packages/MsFeatures
git_branch: devel
git_last_commit: 2fb27a6
git_last_commit_date: 2024-10-29 10:55:16 -0400 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for MsFeatures on teran2

To the developers/maintainers of the MsFeatures package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MsFeatures
Version: 1.15.0
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data MsFeatures
StartedAt: 2025-04-05 00:12:28 -0400 (Sat, 05 Apr 2025)
EndedAt: 2025-04-05 00:12:55 -0400 (Sat, 05 Apr 2025)
EllapsedTime: 26.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data MsFeatures
###
##############################################################################
##############################################################################


* checking for file ‘MsFeatures/DESCRIPTION’ ... OK
* preparing ‘MsFeatures’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MsFeatures.Rmd’ using rmarkdown
Write Error
Write Error

Quitting from MsFeatures.Rmd:263-266 [abundance-correlation-fg003]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! R: Read Exception `/tmp/RtmpGn3vg6/Rbuildfd0b0494a73c8/MsFeatures/vignettes/MsFeatures_files/figure-html/abundance-correlation-fg003-1.png' @ error/png.c/MagickPNGErrorHandler/1643
---
Backtrace:
     ▆
  1. ├─tools::buildVignettes(dir = ".", tangle = TRUE)
  2. │ ├─base::tryCatch(...)
  3. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  4. │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  5. │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
  6. │ └─engine$weave(file, quiet = quiet, encoding = enc)
  7. │   └─knitr:::vweave_rmarkdown(...)
  8. │     └─rmarkdown::render(...)
  9. │       └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
 10. │         └─knitr:::process_file(text, output)
 11. │           ├─xfun:::handle_error(...)
 12. │           ├─base::withCallingHandlers(...)
 13. │           └─knitr:::process_group(group)
 14. │             └─knitr:::call_block(x)
 15. │               └─knitr:::block_exec(params)
 16. │                 └─knitr:::eng_r(options)
 17. │                   └─knitr:::run_hooks(before = FALSE, options, env)
 18. │                     └─base::do.call(hook, args, envir = envir)
 19. └─knitr (local) `<fn>`(...)
 20.   ├─knitr:::in_base_dir(for (f in get_plot_files()) plot_crop(f))
 21.   │ └─knitr:::in_dir(d, expr)
 22.   └─knitr::plot_crop(f)
 23.     └─magick::image_read(x)
 24.       ├─base::withCallingHandlers(...)
 25.       └─magick:::magick_image_readpath(path, density, depth, strip, defines)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MsFeatures.Rmd' failed with diagnostics:
R: Read Exception `/tmp/RtmpGn3vg6/Rbuildfd0b0494a73c8/MsFeatures/vignettes/MsFeatures_files/figure-html/abundance-correlation-fg003-1.png' @ error/png.c/MagickPNGErrorHandler/1643
--- failed re-building ‘MsFeatures.Rmd’

SUMMARY: processing the following file failed:
  ‘MsFeatures.Rmd’

Error: Vignette re-building failed.
Execution halted