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This page was generated on 2025-04-05 00:14 -0400 (Sat, 05 Apr 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 871 |
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Package 104/217 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
GOSemSim 2.33.0 (landing page) Guangchuang Yu
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||
To the developers/maintainers of the GOSemSim package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: GOSemSim |
Version: 2.33.0 |
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data GOSemSim |
StartedAt: 2025-04-05 00:11:48 -0400 (Sat, 05 Apr 2025) |
EndedAt: 2025-04-05 00:11:52 -0400 (Sat, 05 Apr 2025) |
EllapsedTime: 3.8 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data GOSemSim ### ############################################################################## ############################################################################## * checking for file ‘GOSemSim/DESCRIPTION’ ... OK * preparing ‘GOSemSim’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘GOSemSim’ ... ** this is package ‘GOSemSim’ version ‘2.33.0’ ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ g++ -std=gnu++17 -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c ICmethod.cpp -o ICmethod.o ICmethod.cpp: In function ‘Rcpp::NumericMatrix infoContentMethod_cpp(Rcpp::StringVector&, Rcpp::StringVector&, Rcpp::List&, Rcpp::NumericVector&, const std::string&, const std::string&)’: ICmethod.cpp:82:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 82 | for (std::size_t i=0; i < ic_.size(); i++ ) { | ~~^~~~~~~~~~~~ ICmethod.cpp:88:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 88 | for (std::size_t i=0; i < ic_.size(); i++ ) { | ~~^~~~~~~~~~~~ ICmethod.cpp:118:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 118 | for (std::size_t i=0; i < anc_.size(); i++ ) { | ~~^~~~~~~~~~~~~ ICmethod.cpp:131:30: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 131 | for ( std::size_t i = 0; i < id1_.size(); i++ ) { | ~~^~~~~~~~~~~~~ ICmethod.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 138 | for ( std::size_t j = 0; j < id2_.size(); j++ ) { | ~~^~~~~~~~~~~~~ ICmethod.cpp:165:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 165 | for ( std::size_t j = 0; j < id2_.size(); j++ ) { | ~~^~~~~~~~~~~~~ ICmethod.cpp: At global scope: ICmethod.cpp:171:1: fatal error: error writing to /tmp/ccXDYWHG.s: No space left on device 171 | } | ^ compilation terminated. make: *** [/home/rapidbuild/bbs-3.21-bioc-rapid/R/etc/Makeconf:202: ICmethod.o] Error 1 ERROR: compilation failed for package ‘GOSemSim’ * removing ‘/tmp/RtmpsrDuRU/Rinstfc6715e25dc06/GOSemSim’ ----------------------------------- ERROR: package installation failed