Rapid builds (Linux only) of a subset of BioC 3.21<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	871
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BUILD results for DNAcopy on teran2

To the developers/maintainers of the DNAcopy package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: DNAcopy

Version: 1.81.0

Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data DNAcopy

StartedAt: 2025-04-08 12:15:43 -0400 (Tue, 08 Apr 2025)

EndedAt: 2025-04-08 12:15:44 -0400 (Tue, 08 Apr 2025)

EllapsedTime: 1.6 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data DNAcopy
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* checking for file ‘DNAcopy/DESCRIPTION’ ... OK
* preparing ‘DNAcopy’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘DNAcopy’ ...
** this is package ‘DNAcopy’ version ‘1.81.0’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
using Fortran compiler: ‘GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gfortran  -fpic  -g -O2  -Wall -Werror=format-security -c cbsWtstats.f -o cbsWtstats.o
f951: Warning: ‘-Werror=’ argument ‘-Werror=format-security’ is not valid for Fortran
cbsWtstats.f:282:72:

  282 |       iseg(1) = tmaxi
      |                                                                        ^
Warning: ‘tmaxi’ may be used uninitialized [-Wmaybe-uninitialized]
cbsWtstats.f:17:16:

   17 |      2     tmaxi, tmaxj, nal0
      |                ^
note: ‘tmaxi’ was declared here
cbsWtstats.f:283:72:

  283 |       iseg(2) = tmaxj
      |                                                                        ^
Warning: ‘tmaxj’ may be used uninitialized [-Wmaybe-uninitialized]
cbsWtstats.f:17:23:

   17 |      2     tmaxi, tmaxj, nal0
      |                       ^
note: ‘tmaxj’ was declared here
cbsWtstats.f:741:72:

  741 |       end
      |                                                                        ^
Fatal Error: error writing to /tmp/cclqMXuF.s: No space left on device
compilation terminated.
make: *** [/home/rapidbuild/bbs-3.21-bioc-rapid/R/etc/Makeconf:219: cbsWtstats.o] Error 1
ERROR: compilation failed for package ‘DNAcopy’
* removing ‘/tmp/RtmpFCymkz/Rinst92dfb7a2d1d21/DNAcopy’
      -----------------------------------
ERROR: package installation failed