Multiple platform build/check report for BioC 3.20 - CHECK results for biodbHmdb on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4764
palomino8	Windows Server 2022 Datacenter	x64	4.4.3 (2025-02-28 ucrt) -- "Trophy Case"	4495
merida1	macOS 12.7.5 Monterey	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4522
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.3 (2025-02-28) -- "Trophy Case"	4449
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.4.3 (2025-02-28) -- "Trophy Case"	4426
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbHmdb on kjohnson1

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb

Version: 1.12.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.12.0.tar.gz

StartedAt: 2025-04-01 12:12:35 -0400 (Tue, 01 Apr 2025)

EndedAt: 2025-04-01 12:13:46 -0400 (Tue, 01 Apr 2025)

EllapsedTime: 71.8 seconds

RetCode: 0

Status: WARNINGS

CheckDir: biodbHmdb.Rcheck

Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c TagDetector.cpp -o TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-runner.cpp -o test-runner.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-04-01 12:13:13.198][biodb::testContext]
biodb.INFO [2025-04-01 12:13:13.200][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-01 12:13:13.201][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-04-01 12:13:13.201][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-01 12:13:13.202][biodb::testContext]
biodb.INFO [2025-04-01 12:13:13.203][biodb::testThat]
biodb.INFO [2025-04-01 12:13:13.203][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-04-01 12:13:13.203][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-01 12:13:13.204][biodb::testThat]
biodb.INFO [2025-04-01 12:13:13.322][biodb::testContext]
biodb.INFO [2025-04-01 12:13:13.323][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-01 12:13:13.323][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-04-01 12:13:13.323][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-01 12:13:13.324][biodb::testContext]
biodb.INFO [2025-04-01 12:13:13.331][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-04-01 12:13:13.333][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-04-01 12:13:13.340][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-01 12:13:13.341][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-01 12:13:13.342][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-01 12:13:13.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.344][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-01 12:13:13.367][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-01 12:13:13.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.371][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-01 12:13:13.372][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-01 12:13:13.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.375][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-01 12:13:13.376][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-01 12:13:13.377][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-01 12:13:13.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.381][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-01 12:13:13.382][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-01 12:13:13.382][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-01 12:13:13.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.384][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-01 12:13:13.385][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-01 12:13:13.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.388][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-01 12:13:13.389][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-01 12:13:13.390][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-01 12:13:13.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.393][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-01 12:13:13.394][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-01 12:13:13.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.397][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-01 12:13:13.398][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-01 12:13:13.402][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-01 12:13:13.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.404][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-01 12:13:13.404][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-01 12:13:13.405][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-01 12:13:13.405][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-01 12:13:13.406][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-01 12:13:13.407][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-01 12:13:13.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.409][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-01 12:13:13.411][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-01 12:13:13.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.415][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-01 12:13:13.416][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-01 12:13:13.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.419][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-01 12:13:13.420][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-01 12:13:13.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.423][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-01 12:13:13.424][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-01 12:13:13.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.427][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-01 12:13:13.428][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-01 12:13:13.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.431][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-01 12:13:13.433][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-01 12:13:13.460][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-01 12:13:13.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.462][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-01 12:13:13.468][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-01 12:13:13.470][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-01 12:13:13.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.481][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-01 12:13:13.516][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:13.533][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-01 12:13:13.535][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:13.536][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-01 12:13:13.537][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:13.538][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-01 12:13:13.539][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:13.541][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-01 12:13:13.543][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-01 12:13:13.546][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-01 12:13:13.547][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:13.548][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-01 12:13:13.549][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-01 12:13:13.550][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:13.550][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:13.551][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-01 12:13:13.551][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-01 12:13:13.551][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-01 12:13:13.551][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-01 12:13:13.551][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-01 12:13:13.553][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-01 12:13:13.555][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:13.557][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:13.560][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-01 12:13:13.560][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:13.560][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:13.579][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-01 12:13:13.580][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:13.581][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-01 12:13:13.582][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-01 12:13:13.583][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:13.584][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:13.585][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-01 12:13:13.587][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:13.588][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-01 12:13:13.589][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:13.589][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-01 12:13:13.590][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:13.591][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-01 12:13:13.592][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:13.593][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-01 12:13:13.594][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-01 12:13:13.595][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-01 12:13:13.596][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:13.597][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-01 12:13:13.598][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-01 12:13:13.599][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:13.600][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:13.602][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-01 12:13:13.602][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-01 12:13:13.602][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-01 12:13:13.602][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-01 12:13:13.602][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-01 12:13:13.603][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-01 12:13:13.605][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:13.606][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:13.607][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-01 12:13:13.607][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:13.608][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:13.609][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-01 12:13:13.610][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:13.611][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-01 12:13:13.612][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-01 12:13:13.614][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:13.615][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:13.617][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-01 12:13:13.619][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:13.621][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-01 12:13:13.622][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:13.623][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-01 12:13:13.624][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:13.625][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-01 12:13:13.626][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:13.626][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-01 12:13:13.627][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-01 12:13:13.628][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-01 12:13:13.629][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:13.630][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-01 12:13:13.630][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-01 12:13:13.631][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:13.632][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:13.633][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:13.634][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-01 12:13:13.634][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:13.635][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:13.636][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-01 12:13:13.637][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:13.637][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:13.638][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-01 12:13:13.639][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:13.640][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-01 12:13:13.641][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-01 12:13:13.641][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:13.642][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:13.643][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-01 12:13:13.645][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:13.646][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-01 12:13:13.647][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:13.647][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-01 12:13:13.648][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:13.649][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-01 12:13:13.650][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:13.651][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-01 12:13:13.652][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-01 12:13:13.652][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-01 12:13:13.653][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:13.654][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-01 12:13:13.655][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-01 12:13:13.656][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:13.656][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:13.657][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:13.658][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-01 12:13:13.659][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:13.660][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:13.660][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-01 12:13:13.661][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:13.662][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:13.663][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-01 12:13:13.663][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:13.664][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-01 12:13:13.665][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-01 12:13:13.670][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:13.671][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:13.675][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-01 12:13:13.676][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.686][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.702][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.714][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.733][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.755][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-01 12:13:13.761][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-01 12:13:13.762][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-01 12:13:13.764][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-01 12:13:13.765][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-01 12:13:13.766][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-01 12:13:13.767][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-01 12:13:13.769][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-01 12:13:13.770][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-01 12:13:13.771][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-01 12:13:13.772][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-01 12:13:13.773][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-01 12:13:13.775][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-01 12:13:13.776][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-01 12:13:13.777][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-01 12:13:13.778][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-01 12:13:13.780][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-01 12:13:13.781][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-01 12:13:13.782][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-01 12:13:13.783][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-01 12:13:13.785][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-01 12:13:13.786][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-01 12:13:13.787][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-01 12:13:13.789][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-01 12:13:13.790][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-01 12:13:13.791][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-01 12:13:13.792][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-01 12:13:13.793][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-01 12:13:13.794][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-01 12:13:13.796][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-01 12:13:13.797][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-01 12:13:13.798][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-01 12:13:13.799][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-01 12:13:13.801][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-01 12:13:13.803][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-01 12:13:13.804][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-01 12:13:13.805][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-01 12:13:13.806][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-01 12:13:13.806][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-01 12:13:13.807][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-01 12:13:13.807][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-01 12:13:13.808][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-01 12:13:13.808][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-01 12:13:13.809][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-01 12:13:13.809][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-01 12:13:13.810][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-01 12:13:13.810][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-01 12:13:13.811][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-01 12:13:13.812][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-01 12:13:13.812][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-01 12:13:13.813][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-01 12:13:13.813][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-01 12:13:13.814][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-01 12:13:13.814][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-01 12:13:13.815][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-01 12:13:13.816][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-01 12:13:13.816][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-01 12:13:13.817][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-01 12:13:13.817][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-01 12:13:13.818][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-01 12:13:13.819][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-01 12:13:13.819][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-01 12:13:13.820][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-01 12:13:13.820][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-01 12:13:13.821][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-01 12:13:13.822][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-01 12:13:13.822][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-01 12:13:13.823][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-01 12:13:13.824][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-01 12:13:13.825][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-01 12:13:13.825][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-01 12:13:13.826][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-01 12:13:13.827][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-01 12:13:13.827][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-01 12:13:13.828][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-01 12:13:13.829][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-01 12:13:13.829][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-01 12:13:13.830][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-01 12:13:13.833][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-01 12:13:13.834][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-01 12:13:13.835][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-01 12:13:13.837][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-01 12:13:13.840][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-01 12:13:13.846][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-01 12:13:13.848][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-04-01 12:13:13.853][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-01 12:13:13.854][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.857][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:13.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:13.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:13.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:13.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.868][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:13.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:13.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:13.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:13.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:13.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:13.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:13.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:13.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:13.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:13.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:13.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:13.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.949][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:13.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:13.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:13.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:13.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:13.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:13.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.965][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:13.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:13.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:13.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:13.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:13.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:13.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:13.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:13.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:13.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:13.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.990][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:13.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:13.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:13.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:13.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:13.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:13.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:13.997][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-04-01 12:13:14.004][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-04-01 12:13:14.007][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:14.009][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-04-01 12:13:14.010][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:14.011][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-01 12:13:14.012][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:14.013][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-04-01 12:13:14.014][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:14.015][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-01 12:13:14.016][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-01 12:13:14.018][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-01 12:13:14.019][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:14.020][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-04-01 12:13:14.021][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-01 12:13:14.022][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-04-01 12:13:14.022][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-04-01 12:13:14.022][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-04-01 12:13:14.022][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-04-01 12:13:14.022][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-04-01 12:13:14.022][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-04-01 12:13:14.022][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-04-01 12:13:14.022][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-04-01 12:13:14.022][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-04-01 12:13:14.022][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-04-01 12:13:14.022][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-04-01 12:13:14.022][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-04-01 12:13:14.022][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-04-01 12:13:14.022][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-04-01 12:13:14.022][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-04-01 12:13:14.022][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-04-01 12:13:14.022][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-04-01 12:13:14.022][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-04-01 12:13:14.023][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:14.024][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-01 12:13:14.024][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-04-01 12:13:14.024][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-04-01 12:13:14.025][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-01 12:13:14.026][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:14.027][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:14.027][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-01 12:13:14.028][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:14.029][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:14.030][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-01 12:13:14.031][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-01 12:13:14.031][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-04-01 12:13:14.031][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-01 12:13:14.032][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-01 12:13:14.033][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:14.034][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:14.040][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-04-01 12:13:14.042][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-01 12:13:14.043][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-01 12:13:14.045][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-01 12:13:14.047][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-01 12:13:14.076][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-04-01 12:13:14.078][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-04-01 12:13:14.083][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-01 12:13:14.087][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-01 12:13:14.092][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-01 12:13:14.093][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-01 12:13:14.095][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-04-01 12:13:14.096][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-04-01 12:13:14.096][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-01 12:13:14.096][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-04-01 12:13:14.097][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-01 12:13:14.098][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-01 12:13:14.099][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-04-01 12:13:14.100][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-04-01 12:13:14.101][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-01 12:13:14.130][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-01 12:13:14.132][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-01 12:13:14.133][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-01 12:13:14.134][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-01 12:13:14.135][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-01 12:13:14.136][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-04-01 12:13:14.146][biodb::testThat]
biodb.INFO [2025-04-01 12:13:14.147][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-04-01 12:13:14.148][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-01 12:13:14.149][biodb::testThat]
biodb.TRACE[2025-04-01 12:13:14.154][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-04-01 12:13:14.156][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-01 12:13:14.160][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-01 12:13:14.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-01 12:13:14.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:14.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:14.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:14.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:14.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:14.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-01 12:13:14.195][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.217][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:14.218][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:14.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.246][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:14.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:14.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.250][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:14.251][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:14.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.253][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.254][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:14.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:14.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.258][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:14.259][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:14.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.262][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:14.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:14.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:14.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:14.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:14.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:14.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.272][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:14.273][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:14.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:14.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:14.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.279][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:14.280][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:14.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.282][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.283][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:14.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:14.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.299][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:14.301][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:14.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.303][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:14.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:14.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.311][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:14.312][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:14.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.313][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:14.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:14.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.320][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:14.322][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:14.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.325][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:14.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:14.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.332][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:14.333][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:14.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.338][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:14.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:14.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.342][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:14.343][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:14.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:14.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:14.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.351][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:14.353][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:14.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.355][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:14.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:14.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.360][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:14.361][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:14.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:14.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:14.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.369][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:14.371][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:14.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.373][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:14.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:14.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.381][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:14.383][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:14.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.385][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.386][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:14.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:14.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.391][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:14.392][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:14.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:14.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:14.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.399][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-01 12:13:14.399][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:14.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.401][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.402][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-01 12:13:14.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:14.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.458][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:14.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:14.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.462][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:14.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:14.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.466][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:14.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:14.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.469][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:14.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:14.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.473][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:14.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:14.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.478][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:14.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:14.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:14.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:14.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:14.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:14.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:14.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:14.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:14.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:14.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:14.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:14.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:14.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:14.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:14.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:14.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:14.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:14.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:14.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:14.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:14.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:14.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:14.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:14.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:14.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:14.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:14.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:14.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:14.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:14.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:14.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:14.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.550][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:14.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:14.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.553][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:14.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:14.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.556][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:14.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:14.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.560][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:14.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:14.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.563][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:14.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:14.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.566][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:14.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:14.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:14.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:14.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:14.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:14.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:14.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:14.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:14.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:14.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:14.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:14.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:14.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:14.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.593][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:14.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:14.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.597][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:14.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:14.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.606][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:14.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:14.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:14.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:14.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:14.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:14.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:14.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:14.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:14.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:14.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.623][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:14.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:14.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.626][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:14.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:14.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:14.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:14.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:14.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:14.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:14.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:14.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.640][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:14.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:14.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.644][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:14.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:14.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.647][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:14.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:14.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:14.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:14.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.654][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:14.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:14.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.658][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:14.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:14.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.661][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-01 12:13:14.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:14.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:14.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:14.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:14.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:14.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:14.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:14.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.676][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-01 12:13:14.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:14.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:14.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:14.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:14.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:14.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:14.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:14.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:14.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:14.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:14.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:14.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.718][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:14.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:14.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.723][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:14.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:14.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.731][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:14.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:14.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:14.760][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-04-01 12:13:14.763][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-01 12:13:14.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-01 12:13:14.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.767][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-01 12:13:14.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-01 12:13:14.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.770][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-01 12:13:14.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-01 12:13:14.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.773][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-01 12:13:14.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-01 12:13:14.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.807][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:14.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:14.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.844][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:14.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:14.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.848][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:14.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:14.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.851][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:14.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:14.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.876][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.877][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:14.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:14.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.891][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:14.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:14.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.904][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:14.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:14.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.907][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:14.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:14.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.911][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:14.911][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:14.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.913][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.914][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:14.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:14.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:14.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:14.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:14.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:14.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:14.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:14.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.936][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:14.937][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:14.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:14.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:14.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:14.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:14.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:14.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:14.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:14.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:14.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.966][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:14.967][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:14.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.970][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:14.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:14.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:14.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:14.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:14.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:14.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:14.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:14.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:14.995][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:14.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:14.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:14.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:14.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:14.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.010][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.014][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.017][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.021][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.022][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.023][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.024][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:15.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:15.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.040][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:15.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:15.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:15.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:15.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.054][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:15.055][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:15.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:15.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:15.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.071][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:15.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:15.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.078][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:15.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:15.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.082][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:15.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:15.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.085][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:15.086][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:15.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.088][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.089][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:15.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:15.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.101][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:15.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:15.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.105][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:15.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:15.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.109][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:15.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:15.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.113][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:15.114][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:15.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.115][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.116][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:15.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:15.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.128][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.132][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.135][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.139][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.140][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.142][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:15.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:15.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:15.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:15.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:15.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:15.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.165][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:15.166][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:15.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.168][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:15.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:15.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:15.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:15.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:15.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:15.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:15.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:15.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.200][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:15.201][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:15.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:15.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:15.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.226][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.227][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.229][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.253][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.254][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.255][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.268][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:15.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:15.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.272][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:15.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:15.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:15.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:15.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.278][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:15.279][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:15.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.282][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:15.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:15.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:15.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:15.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:15.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:15.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:15.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:15.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.305][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:15.306][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:15.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.307][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:15.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:15.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.340][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.341][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.356][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.360][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.363][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.367][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.368][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.369][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.370][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.382][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:15.383][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:15.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.385][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.391][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.392][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.399][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.400][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.407][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:15.409][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:15.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.415][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:15.417][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:15.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.424][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.425][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.432][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.433][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.439][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:15.441][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:15.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.447][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:15.448][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:15.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.455][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:15.456][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:15.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.458][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.463][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:15.465][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:15.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.472][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.473][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.475][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.480][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.481][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.488][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:15.489][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:15.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.497][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.503][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:15.504][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:15.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.506][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.511][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:15.512][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:15.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.520][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:15.521][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:15.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.523][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.528][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:15.530][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:15.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.532][ef$get] fields variable is a list.
biodb.INFO [2025-04-01 12:13:15.540][biodb::testThat]
biodb.INFO [2025-04-01 12:13:15.542][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-04-01 12:13:15.543][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-01 12:13:15.544][biodb::testThat]
biodb.DEBUG[2025-04-01 12:13:15.559][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-04-01 12:13:15.567][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.INFO [2025-04-01 12:13:15.572][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34" for "hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34".
biodb.DEBUG[2025-04-01 12:13:15.574][self$isDownloaded] Database hmdb.metabolites has not yet been downloaded.
biodb.INFO [2025-04-01 12:13:15.575][self$download] Downloading whole database of hmdb.metabolites.
biodb.INFO [2025-04-01 12:13:15.575][private$doDownload] Downloading HMDB metabolite database at "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" ...
biodb.TRACE[2025-04-01 12:13:15.577][cch$addFilesToCache] Moving files to cache [1]: "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.TRACE[2025-04-01 12:13:15.578][private$doAddFilesToCache] Destination files are [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-04-01 12:13:15.582][cch$addFilesToCache] Done adding files.
biodb.DEBUG[2025-04-01 12:13:15.584][self$getDownloadPath] Download path of hmdb.metabolites is "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-04-01 12:13:15.585][self$download] Downloading of hmdb.metabolites completed.
biodb.TRACE[2025-04-01 12:13:15.587][self$addFilesToCache] Moving files to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/marker7a88594fc92emarker".
biodb.TRACE[2025-04-01 12:13:15.588][private$doAddFilesToCache] Destination files are [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/downloaded.marker".
biodb.DEBUG[2025-04-01 12:13:15.589][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-04-01 12:13:15.591][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-04-01 12:13:15.592][self$download] Extract whole database of hmdb.metabolites.
biodb.INFO [2025-04-01 12:13:15.593][private$doExtractDownload] Extracting content of downloaded',
                    ' HMDB metabolite database...
biodb.DEBUG[2025-04-01 12:13:15.594][self$getDownloadPath] Download path of hmdb.metabolites is "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-04-01 12:13:15.596][private$doExtractDownload] Unzipping /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip into /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp...
biodb.DEBUG[2025-04-01 12:13:15.638][private$findXmlDatabaseFile] Found files [1]: "hmdb_two_full_entries.xml" into /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip.
biodb.DEBUG[2025-04-01 12:13:15.640][private$findXmlDatabaseFile] Found XML file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/hmdb_two_full_entries.xml in ZIP file.
biodb.DEBUG[2025-04-01 12:13:15.641][private$doExtractDownload] Delete existing entry files in cache system.
biodb.DEBUG[2025-04-01 12:13:15.642][private$doExtractDownload] Extract entries from XML file "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/hmdb_two_full_entries.xml", into "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp".
biodb.TRACE[2025-04-01 12:13:15.654][self$addFilesToCache] Moving files to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/HMDB0000001.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/HMDB0000002.xml".
biodb.TRACE[2025-04-01 12:13:15.655][private$doAddFilesToCache] Destination files are [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-04-01 12:13:15.656][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-04-01 12:13:15.657][private$doExtractDownload] Delete extracted database.
biodb.TRACE[2025-04-01 12:13:15.659][self$addFilesToCache] Moving files to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/marker7a8852118d1marker".
biodb.TRACE[2025-04-01 12:13:15.660][private$doAddFilesToCache] Destination files are [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/extracted.marker".
biodb.DEBUG[2025-04-01 12:13:15.662][self$addFilesToCache] Done adding files.
biodb.TRACE[2025-04-01 12:13:15.663][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-04-01 12:13:15.665][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-01 12:13:15.666][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-04-01 12:13:15.667][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-01 12:13:15.691][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-01 12:13:15.692][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-01 12:13:15.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-01 12:13:15.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:15.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:15.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:15.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:15.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:15.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-01 12:13:15.716][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:15.717][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:15.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:15.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:15.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.724][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:15.725][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:15.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.729][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:15.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:15.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.732][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.733][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.735][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.736][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.740][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.740][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.742][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.743][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.748][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:15.749][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:15.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.751][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:15.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:15.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.756][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:15.757][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:15.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:15.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:15.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.764][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.764][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.767][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.771][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:15.772][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:15.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:15.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:15.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.779][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.780][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.781][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.786][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.787][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.793][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:15.794][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:15.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.796][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:15.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:15.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.800][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:15.801][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:15.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:15.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:15.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.807][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.807][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.814][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:15.814][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:15.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:15.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:15.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.821][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:15.821][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:15.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.824][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:15.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:15.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.827][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:15.828][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:15.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.831][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:15.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:15.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.841][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:15.842][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:15.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.844][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:15.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:15.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.848][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-01 12:13:15.849][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:15.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.852][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-01 12:13:15.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:15.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:15.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:15.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:15.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:15.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:15.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:15.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.867][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.870][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.873][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:15.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.877][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.880][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.883][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:15.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:15.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:15.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:15.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:15.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:15.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:15.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:15.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:15.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:15.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:15.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:15.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:15.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:15.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:15.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:15.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:15.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:15.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:15.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:15.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:15.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.940][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:15.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:15.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.943][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:15.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:15.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.946][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:15.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:15.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.949][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:15.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:15.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.953][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:15.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:15.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.962][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:15.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:15.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:15.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:15.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:15.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:15.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:15.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:15.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:15.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.985][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.989][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.992][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:15.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:15.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:15.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:15.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:15.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:16.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:16.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:16.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:16.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.009][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:16.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:16.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.018][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:16.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:16.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:16.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:16.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.026][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.030][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.034][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:16.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:16.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.041][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:16.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:16.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.044][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:16.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:16.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.047][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-01 12:13:16.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:16.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:16.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:16.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:16.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:16.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:16.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:16.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.066][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-01 12:13:16.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:16.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.078][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.095][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:16.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:16.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.098][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:16.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:16.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:16.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:16.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.105][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:16.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:16.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:16.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:16.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:16.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:16.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:16.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:16.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:16.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:16.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:16.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:16.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:16.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:16.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:16.128][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-04-01 12:13:16.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-01 12:13:16.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-01 12:13:16.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-01 12:13:16.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-01 12:13:16.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-01 12:13:16.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-01 12:13:16.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-01 12:13:16.147][biodb::testThat]
biodb.INFO [2025-04-01 12:13:16.148][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-04-01 12:13:16.149][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-01 12:13:16.150][biodb::testThat]
biodb.TRACE[2025-04-01 12:13:16.153][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.154][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.155][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:16.157][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-04-01 12:13:16.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.188][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:16.198][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-04-01 12:13:16.200][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-04-01 12:13:16.201][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-04-01 12:13:16.202][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.INFO [2025-04-01 12:13:16.203][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34" for "hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34".
biodb.DEBUG[2025-04-01 12:13:16.205][self$isDownloaded] Database hmdb.metabolites has not yet been downloaded.
biodb.INFO [2025-04-01 12:13:16.206][self$download] Downloading whole database of hmdb.metabolites.
biodb.INFO [2025-04-01 12:13:16.206][private$doDownload] Downloading HMDB metabolite database at "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" ...
biodb.TRACE[2025-04-01 12:13:16.208][cch$addFilesToCache] Moving files to cache [1]: "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.TRACE[2025-04-01 12:13:16.209][private$doAddFilesToCache] Destination files are [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-04-01 12:13:16.211][cch$addFilesToCache] Done adding files.
biodb.DEBUG[2025-04-01 12:13:16.213][self$getDownloadPath] Download path of hmdb.metabolites is "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-04-01 12:13:16.214][self$download] Downloading of hmdb.metabolites completed.
biodb.TRACE[2025-04-01 12:13:16.223][self$addFilesToCache] Moving files to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/marker7a88340867a3marker".
biodb.TRACE[2025-04-01 12:13:16.225][private$doAddFilesToCache] Destination files are [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/downloaded.marker".
biodb.DEBUG[2025-04-01 12:13:16.226][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-04-01 12:13:16.227][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-04-01 12:13:16.228][self$download] Extract whole database of hmdb.metabolites.
biodb.INFO [2025-04-01 12:13:16.242][private$doExtractDownload] Extracting content of downloaded',
                    ' HMDB metabolite database...
biodb.DEBUG[2025-04-01 12:13:16.244][self$getDownloadPath] Download path of hmdb.metabolites is "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-04-01 12:13:16.245][private$doExtractDownload] Unzipping /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip into /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp...
biodb.DEBUG[2025-04-01 12:13:16.250][private$findXmlDatabaseFile] Found files [1]: "hmdb_two_full_entries.xml" into /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip.
biodb.DEBUG[2025-04-01 12:13:16.251][private$findXmlDatabaseFile] Found XML file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/hmdb_two_full_entries.xml in ZIP file.
biodb.DEBUG[2025-04-01 12:13:16.252][private$doExtractDownload] Delete existing entry files in cache system.
biodb.DEBUG[2025-04-01 12:13:16.254][private$doExtractDownload] Extract entries from XML file "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/hmdb_two_full_entries.xml", into "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp".
biodb.TRACE[2025-04-01 12:13:16.266][self$addFilesToCache] Moving files to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/HMDB0000001.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/HMDB0000002.xml".
biodb.TRACE[2025-04-01 12:13:16.267][private$doAddFilesToCache] Destination files are [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-04-01 12:13:16.269][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-04-01 12:13:16.270][private$doExtractDownload] Delete extracted database.
biodb.TRACE[2025-04-01 12:13:16.272][self$addFilesToCache] Moving files to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/marker7a8813cc1905marker".
biodb.TRACE[2025-04-01 12:13:16.273][private$doAddFilesToCache] Destination files are [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/extracted.marker".
biodb.DEBUG[2025-04-01 12:13:16.274][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-04-01 12:13:16.275][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-01 12:13:16.276][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:16.277][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-01 12:13:16.278][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-01 12:13:16.279][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-01 12:13:16.281][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-01 12:13:16.282][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-01 12:13:16.283][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-01 12:13:16.284][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-01 12:13:16.286][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.293][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.296][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:16.300][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-01 12:13:16.300][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-01 12:13:16.301][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-04-01 12:13:16.314][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:16.315][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:16.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.317][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:16.318][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-04-01 12:13:16.331][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:16.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:16.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.335][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:16.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:16.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.338][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:16.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:16.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:16.344][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-04-01 12:13:16.404][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-04-01 12:13:16.406][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-04-01 12:13:16.407][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-04-01 12:13:16.421][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:16.422][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:16.424][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-01 12:13:16.425][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:16.426][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-01 12:13:16.441][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-01 12:13:16.442][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-01 12:13:16.443][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-01 12:13:16.444][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-01 12:13:16.445][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-01 12:13:16.445][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-01 12:13:16.447][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:16.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:16.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.451][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:16.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:16.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.454][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:16.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:16.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.457][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:16.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:16.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:16.460][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-01 12:13:16.461][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-01 12:13:16.462][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-04-01 12:13:16.476][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.477][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.479][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:16.480][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-04-01 12:13:16.499][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.503][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.506][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:16.512][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-04-01 12:13:16.514][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-04-01 12:13:16.515][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-04-01 12:13:16.516][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-04-01 12:13:16.518][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:16.519][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:16.521][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-01 12:13:16.522][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:16.523][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-01 12:13:16.524][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-01 12:13:16.525][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-01 12:13:16.526][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-01 12:13:16.527][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-01 12:13:16.528][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-01 12:13:16.528][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-01 12:13:16.530][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.534][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.537][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.540][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:16.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:16.543][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-01 12:13:16.544][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-01 12:13:16.545][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-04-01 12:13:16.561][biodb::testThat]
biodb.INFO [2025-04-01 12:13:16.562][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-04-01 12:13:16.563][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-01 12:13:16.564][biodb::testThat]
biodb.TRACE[2025-04-01 12:13:16.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:16.609][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-04-01 12:13:16.611][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-04-01 12:13:16.611][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-04-01 12:13:16.613][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:16.614][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:16.616][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-01 12:13:16.617][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:16.618][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-01 12:13:16.619][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-01 12:13:16.620][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-01 12:13:16.621][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-01 12:13:16.622][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-01 12:13:16.622][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-01 12:13:16.623][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-01 12:13:16.625][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.628][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:16.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:16.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:16.643][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-01 12:13:16.644][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-04-01 12:13:16.674][biodb::testThat]
biodb.INFO [2025-04-01 12:13:16.676][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-04-01 12:13:16.678][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-01 12:13:16.679][biodb::testThat]
biodb.TRACE[2025-04-01 12:13:16.705][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-01 12:13:16.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-01 12:13:16.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.709][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-01 12:13:16.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-01 12:13:16.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.713][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-01 12:13:16.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-01 12:13:16.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.720][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-01 12:13:16.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-01 12:13:16.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.766][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-01 12:13:16.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-01 12:13:16.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.770][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-01 12:13:16.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-01 12:13:16.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.773][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-01 12:13:16.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-01 12:13:16.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:16.777][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-01 12:13:16.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-01 12:13:16.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:16.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-01 12:13:16.787][biodb::testThat]
biodb.INFO [2025-04-01 12:13:16.788][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-04-01 12:13:16.789][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-01 12:13:16.790][biodb::testThat]
biodb.INFO [2025-04-01 12:13:16.806][biodb::testThat]
biodb.INFO [2025-04-01 12:13:16.808][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-04-01 12:13:16.809][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-01 12:13:16.810][biodb::testThat]
biodb.INFO [2025-04-01 12:13:16.820][biodb::testThat]
biodb.INFO [2025-04-01 12:13:16.821][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-04-01 12:13:16.822][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-01 12:13:16.823][biodb::testThat]
biodb.DEBUG[2025-04-01 12:13:16.827][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-04-01 12:13:30.375][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-04-01 12:13:30.577][biodb::testThat]
biodb.INFO [2025-04-01 12:13:30.578][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-04-01 12:13:30.580][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-01 12:13:30.581][biodb::testThat]
biodb.DEBUG[2025-04-01 12:13:36.810][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-04-01 12:13:37.012][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:37.014][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:37.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:37.017][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:37.018][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:37.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:37.021][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:37.022][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:37.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.024][ef$get] fields variable is a list.
biodb.INFO [2025-04-01 12:13:37.027][biodb::testThat]
biodb.INFO [2025-04-01 12:13:37.028][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-04-01 12:13:37.029][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-01 12:13:37.030][biodb::testThat]
biodb.DEBUG[2025-04-01 12:13:37.032][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-04-01 12:13:37.089][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-01 12:13:37.091][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:37.093][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-01 12:13:37.166][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-04-01 12:13:37.169][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-01 12:13:37.170][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-01 12:13:37.172][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-01 12:13:37.174][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:37.176][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-01 12:13:37.178][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-01 12:13:37.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-01 12:13:37.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:37.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:37.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-01 12:13:37.197][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:37.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:37.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:37.202][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:37.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:37.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:37.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:37.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:37.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:37.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:37.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:37.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:37.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:37.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:37.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:37.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:37.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:37.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:37.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:37.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:37.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:37.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:37.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:37.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:37.231][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-04-01 12:13:37.231][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-04-01 12:13:37.250][biodb::testThat]
biodb.INFO [2025-04-01 12:13:37.251][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-04-01 12:13:37.252][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-01 12:13:37.253][biodb::testThat]
biodb.DEBUG[2025-04-01 12:13:37.262][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-04-01 12:13:37.263][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-04-01 12:13:37.264][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-01 12:13:37.266][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:37.267][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-01 12:13:37.269][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-04-01 12:13:37.270][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-01 12:13:37.278][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-01 12:13:37.280][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-01 12:13:37.282][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:37.283][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-01 12:13:37.284][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-01 12:13:37.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-01 12:13:37.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:37.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:37.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-01 12:13:37.298][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:37.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:37.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:37.302][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:37.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:37.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:37.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:37.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:37.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:37.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:37.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:37.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:37.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:37.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:37.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:37.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:37.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:37.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:37.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:37.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:37.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:37.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:37.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:37.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:37.327][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-04-01 12:13:37.328][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-04-01 12:13:37.329][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-04-01 12:13:37.344][biodb::testThat]
biodb.INFO [2025-04-01 12:13:37.345][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-04-01 12:13:37.346][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-01 12:13:37.347][biodb::testThat]
biodb.INFO [2025-04-01 12:13:37.373][biodb::testThat]
biodb.INFO [2025-04-01 12:13:37.375][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-04-01 12:13:37.375][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-01 12:13:37.376][biodb::testThat]
biodb.DEBUG[2025-04-01 12:13:37.379][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:37.380][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:37.381][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-01 12:13:37.383][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:37.384][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-01 12:13:37.385][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-01 12:13:37.386][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-01 12:13:37.387][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-01 12:13:37.388][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-04-01 12:13:37.405][biodb::testThat]
biodb.INFO [2025-04-01 12:13:37.406][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-04-01 12:13:37.407][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-01 12:13:37.408][biodb::testThat]
biodb.DEBUG[2025-04-01 12:13:37.410][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:37.412][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:37.413][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-01 12:13:37.414][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:37.415][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-01 12:13:37.416][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-01 12:13:37.417][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-01 12:13:37.418][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-01 12:13:37.419][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-04-01 12:13:37.429][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:37.430][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:37.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.431][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:37.432][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:37.433][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:37.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:37.436][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:37.437][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:37.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:37.438][ef$get] fields variable is a list.
biodb.INFO [2025-04-01 12:13:37.439][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-01 12:13:37.440][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-04-01 12:13:37.449][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-04-01 12:13:37.450][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-01 12:13:37.450][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:37.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:37.452][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.453][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-04-01 12:13:37.458][biodb::testContext]
biodb.INFO [2025-04-01 12:13:37.459][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-01 12:13:37.460][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-04-01 12:13:37.461][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-01 12:13:37.462][biodb::testContext]
biodb.INFO [2025-04-01 12:13:37.467][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-04-01 12:13:37.469][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-04-01 12:13:37.473][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-01 12:13:37.475][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-01 12:13:37.476][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-01 12:13:37.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.479][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-01 12:13:37.480][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-01 12:13:37.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.483][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-01 12:13:37.484][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-01 12:13:37.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.487][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-01 12:13:37.488][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-01 12:13:37.489][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-01 12:13:37.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.492][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-01 12:13:37.493][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-01 12:13:37.494][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-01 12:13:37.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.497][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-01 12:13:37.497][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-01 12:13:37.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.500][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-01 12:13:37.501][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-01 12:13:37.502][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-01 12:13:37.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.505][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-01 12:13:37.506][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-01 12:13:37.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.519][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-01 12:13:37.520][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-01 12:13:37.521][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-01 12:13:37.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.525][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-01 12:13:37.526][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-01 12:13:37.527][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-01 12:13:37.528][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-01 12:13:37.528][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-01 12:13:37.529][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-01 12:13:37.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.532][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-01 12:13:37.533][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-01 12:13:37.534][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.536][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-01 12:13:37.537][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-01 12:13:37.538][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.540][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-01 12:13:37.541][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-01 12:13:37.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.544][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-01 12:13:37.545][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-01 12:13:37.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.548][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-01 12:13:37.549][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-01 12:13:37.550][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.552][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-01 12:13:37.553][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-01 12:13:37.569][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-01 12:13:37.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.573][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-01 12:13:37.574][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-01 12:13:37.575][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-01 12:13:37.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.578][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-01 12:13:37.580][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:37.581][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-01 12:13:37.582][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:37.583][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-01 12:13:37.584][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:37.585][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-01 12:13:37.585][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:37.586][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-01 12:13:37.587][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-01 12:13:37.588][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-01 12:13:37.589][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:37.590][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-01 12:13:37.591][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-01 12:13:37.591][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:37.592][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:37.593][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-01 12:13:37.593][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-01 12:13:37.593][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-01 12:13:37.593][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-01 12:13:37.593][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-01 12:13:37.594][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-01 12:13:37.595][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:37.595][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:37.596][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-01 12:13:37.597][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:37.598][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:37.599][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-01 12:13:37.600][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:37.601][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-01 12:13:37.602][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-01 12:13:37.603][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:37.604][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:37.605][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-01 12:13:37.607][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:37.608][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-01 12:13:37.608][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:37.609][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-01 12:13:37.610][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:37.611][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-01 12:13:37.612][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:37.613][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-01 12:13:37.613][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-01 12:13:37.614][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-01 12:13:37.615][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:37.616][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-01 12:13:37.617][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-01 12:13:37.618][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:37.618][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:37.619][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-01 12:13:37.619][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-01 12:13:37.619][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-01 12:13:37.619][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-01 12:13:37.619][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-01 12:13:37.620][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-01 12:13:37.621][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:37.622][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:37.623][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-01 12:13:37.623][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:37.624][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:37.632][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-01 12:13:37.633][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:37.634][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-01 12:13:37.635][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-01 12:13:37.636][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:37.636][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:37.637][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-01 12:13:37.639][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:37.640][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-01 12:13:37.641][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:37.642][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-01 12:13:37.643][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:37.644][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-01 12:13:37.645][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:37.645][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-01 12:13:37.646][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-01 12:13:37.647][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-01 12:13:37.648][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:37.649][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-01 12:13:37.650][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-01 12:13:37.650][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:37.651][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:37.652][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:37.653][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-01 12:13:37.654][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:37.655][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:37.656][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-01 12:13:37.656][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:37.657][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:37.658][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-01 12:13:37.659][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:37.660][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-01 12:13:37.660][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-01 12:13:37.661][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:37.662][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:37.663][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-01 12:13:37.665][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:37.666][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-01 12:13:37.666][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:37.667][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-01 12:13:37.668][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:37.669][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-01 12:13:37.670][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:37.670][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-01 12:13:37.671][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-01 12:13:37.672][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-01 12:13:37.673][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:37.674][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-01 12:13:37.675][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-01 12:13:37.675][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:37.676][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:37.677][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:37.678][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-01 12:13:37.679][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:37.680][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:37.680][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-01 12:13:37.681][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:37.682][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:37.683][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-01 12:13:37.683][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:37.684][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-01 12:13:37.685][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-01 12:13:37.686][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:37.686][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:37.688][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-01 12:13:37.688][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.725][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.733][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.745][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.749][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.757][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.761][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-01 12:13:37.762][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-01 12:13:37.764][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-01 12:13:37.765][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-01 12:13:37.766][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-01 12:13:37.767][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-01 12:13:37.768][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-01 12:13:37.770][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-01 12:13:37.771][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-01 12:13:37.772][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-01 12:13:37.773][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-01 12:13:37.774][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-01 12:13:37.775][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-01 12:13:37.777][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-01 12:13:37.778][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-01 12:13:37.779][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-01 12:13:37.780][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-01 12:13:37.781][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-01 12:13:37.782][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-01 12:13:37.784][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-01 12:13:37.785][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-01 12:13:37.786][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-01 12:13:37.787][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-01 12:13:37.788][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-01 12:13:37.789][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-01 12:13:37.791][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-01 12:13:37.792][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-01 12:13:37.793][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-01 12:13:37.794][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-01 12:13:37.795][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-01 12:13:37.796][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-01 12:13:37.798][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-01 12:13:37.799][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-01 12:13:37.800][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-01 12:13:37.801][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-01 12:13:37.802][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-01 12:13:37.804][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-01 12:13:37.805][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-01 12:13:37.806][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-01 12:13:37.807][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-01 12:13:37.809][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-01 12:13:37.810][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-01 12:13:37.811][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-01 12:13:37.813][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-01 12:13:37.822][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-01 12:13:37.824][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-01 12:13:37.825][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-01 12:13:37.826][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-01 12:13:37.827][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-01 12:13:37.829][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-01 12:13:37.830][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-01 12:13:37.831][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-01 12:13:37.833][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-01 12:13:37.834][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-01 12:13:37.835][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-01 12:13:37.837][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-01 12:13:37.838][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-01 12:13:37.839][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-01 12:13:37.841][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-01 12:13:37.842][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-01 12:13:37.843][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-01 12:13:37.845][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-01 12:13:37.846][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-01 12:13:37.847][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-01 12:13:37.849][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-01 12:13:37.850][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-01 12:13:37.852][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-01 12:13:37.854][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-01 12:13:37.856][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-01 12:13:37.857][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-01 12:13:37.859][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-01 12:13:37.861][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-01 12:13:37.862][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-01 12:13:37.864][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-01 12:13:37.865][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-01 12:13:37.866][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-01 12:13:37.867][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-01 12:13:37.868][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-01 12:13:37.870][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-01 12:13:37.871][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-01 12:13:37.872][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-01 12:13:37.873][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-01 12:13:37.875][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-01 12:13:37.876][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-01 12:13:37.878][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-04-01 12:13:37.879][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-01 12:13:37.880][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.881][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.883][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:37.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:37.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:37.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:37.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:37.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:37.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:37.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:37.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:37.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:37.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:37.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:37.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:37.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:37.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:37.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:37.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.932][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:37.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:37.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.937][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:37.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:37.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.942][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:37.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:37.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:37.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:37.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.953][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:37.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:37.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:37.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:37.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:37.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:37.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.969][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:37.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:37.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:37.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:37.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:37.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:37.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:37.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:37.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:37.981][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-04-01 12:13:37.983][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-04-01 12:13:37.985][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:37.986][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-04-01 12:13:37.987][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:37.988][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-01 12:13:37.989][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:37.990][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-04-01 12:13:37.991][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:37.992][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-01 12:13:37.993][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-01 12:13:37.993][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-01 12:13:37.994][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:37.995][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-04-01 12:13:37.996][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-01 12:13:37.997][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-04-01 12:13:37.997][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-04-01 12:13:37.997][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-04-01 12:13:37.997][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-04-01 12:13:37.997][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-04-01 12:13:37.997][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-04-01 12:13:37.997][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-04-01 12:13:37.997][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-04-01 12:13:37.997][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-04-01 12:13:37.997][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-04-01 12:13:37.997][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-04-01 12:13:37.997][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-04-01 12:13:37.997][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-04-01 12:13:37.997][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-04-01 12:13:37.997][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-04-01 12:13:37.997][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-04-01 12:13:37.997][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-04-01 12:13:37.997][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-04-01 12:13:37.998][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:37.999][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-01 12:13:37.999][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-04-01 12:13:37.999][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-04-01 12:13:38.000][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-01 12:13:38.000][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:38.001][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:38.002][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-01 12:13:38.003][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:38.004][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:38.006][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-01 12:13:38.007][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-01 12:13:38.007][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-04-01 12:13:38.008][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-01 12:13:38.010][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-01 12:13:38.011][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:38.013][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:38.015][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-04-01 12:13:38.017][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-01 12:13:38.026][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-01 12:13:38.028][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-01 12:13:38.030][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-01 12:13:38.033][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-04-01 12:13:38.034][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-04-01 12:13:38.035][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-01 12:13:38.037][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-01 12:13:38.038][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-01 12:13:38.039][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-01 12:13:38.040][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-04-01 12:13:38.041][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-04-01 12:13:38.042][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-01 12:13:38.042][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-04-01 12:13:38.043][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-01 12:13:38.043][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-01 12:13:38.044][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-04-01 12:13:38.045][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-04-01 12:13:38.046][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-01 12:13:38.047][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-01 12:13:38.048][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-01 12:13:38.049][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-01 12:13:38.050][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-01 12:13:38.051][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-01 12:13:38.052][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-04-01 12:13:38.054][biodb::testThat]
biodb.INFO [2025-04-01 12:13:38.055][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-04-01 12:13:38.056][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-01 12:13:38.056][biodb::testThat]
biodb.DEBUG[2025-04-01 12:13:38.061][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:38.063][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:38.065][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-01 12:13:38.066][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:38.067][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-01 12:13:38.068][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-01 12:13:38.069][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-01 12:13:38.070][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-01 12:13:38.071][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-01 12:13:38.074][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-04-01 12:13:38.081][biodb::testThat]
biodb.INFO [2025-04-01 12:13:38.082][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-04-01 12:13:38.083][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-01 12:13:38.084][biodb::testThat]
biodb.DEBUG[2025-04-01 12:13:38.086][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-04-01 12:13:38.087][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-01 12:13:38.089][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:38.090][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-01 12:13:38.092][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-04-01 12:13:38.093][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-01 12:13:38.095][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-04-01 12:13:38.096][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-01 12:13:38.097][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-01 12:13:38.098][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-01 12:13:38.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-01 12:13:38.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:38.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:38.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:38.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:38.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-01 12:13:38.113][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:38.114][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:38.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:38.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:38.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.120][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:38.121][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:38.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.123][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.124][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:38.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:38.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.127][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:38.128][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:38.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.130][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.131][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:38.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:38.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.142][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:38.143][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:38.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.144][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.146][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:38.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:38.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.149][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:38.150][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:38.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:38.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:38.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.156][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:38.157][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:38.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.158][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:38.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:38.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.163][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:38.164][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:38.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.166][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:38.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:38.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.170][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:38.171][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:38.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:38.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:38.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.177][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:38.177][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:38.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.179][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:38.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:38.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.184][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:38.184][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:38.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.186][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:38.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:38.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.190][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:38.191][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:38.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.193][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.194][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:38.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:38.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.197][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:38.198][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:38.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:38.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:38.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.204][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:38.205][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:38.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:38.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:38.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.215][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:38.216][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:38.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.217][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:38.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:38.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.222][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:38.223][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:38.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.225][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:38.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:38.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.229][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:38.230][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:38.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.232][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.240][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:38.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:38.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.245][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:38.245][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:38.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.247][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:38.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:38.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.253][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-01 12:13:38.254][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:38.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.257][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-01 12:13:38.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:38.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:38.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:38.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:38.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:38.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:38.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:38.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.271][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:38.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:38.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.274][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:38.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:38.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.278][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:38.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:38.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.281][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:38.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:38.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.285][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:38.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:38.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.288][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:38.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:38.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:38.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:38.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:38.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:38.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:38.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:38.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:38.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:38.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:38.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:38.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:38.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:38.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:38.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:38.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:38.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:38.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:38.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:38.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:38.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:38.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.326][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:38.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:38.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:38.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:38.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:38.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:38.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:38.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:38.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:38.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:38.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.351][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:38.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:38.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.354][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:38.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:38.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.358][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:38.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:38.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.361][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:38.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:38.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.364][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:38.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:38.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.368][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:38.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:38.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:38.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:38.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:38.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:38.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:38.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:38.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:38.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:38.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:38.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:38.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:38.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:38.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.391][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:38.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:38.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.394][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:38.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:38.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.397][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:38.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:38.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:38.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:38.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:38.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:38.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:38.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:38.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.411][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:38.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:38.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.414][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:38.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:38.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.417][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:38.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:38.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:38.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:38.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:38.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:38.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:38.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:38.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.439][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:38.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:38.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.442][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:38.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:38.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.445][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:38.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:38.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.449][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:38.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:38.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:38.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:38.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.459][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:38.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:38.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.462][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-01 12:13:38.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:38.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:38.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:38.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:38.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:38.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:38.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:38.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.476][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-01 12:13:38.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:38.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:38.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:38.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:38.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:38.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:38.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:38.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:38.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:38.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:38.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:38.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.497][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:38.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:38.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.500][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:38.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:38.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:38.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:38.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.506][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:38.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:38.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:38.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:38.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:38.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:38.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:38.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:38.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:38.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:38.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:38.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:38.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:38.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:38.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:38.537][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-04-01 12:13:38.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:38.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:38.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:38.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:38.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:38.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:38.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:38.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:38.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-01 12:13:38.556][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-01 12:13:38.557][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-04-01 12:13:38.558][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-04-01 12:13:38.559][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-01 12:13:38.560][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:38.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:38.561][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:38.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:38.563][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-04-01 12:13:38.568][biodb::testContext]
biodb.INFO [2025-04-01 12:13:38.569][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-01 12:13:38.570][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-04-01 12:13:38.571][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-01 12:13:38.572][biodb::testContext]
biodb.INFO [2025-04-01 12:13:38.577][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-04-01 12:13:38.579][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-04-01 12:13:38.584][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-01 12:13:38.585][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-01 12:13:38.586][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-01 12:13:38.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.589][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-01 12:13:38.591][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-01 12:13:38.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.594][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-01 12:13:38.596][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-01 12:13:38.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.599][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-01 12:13:38.601][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-01 12:13:38.602][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-01 12:13:38.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.605][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-01 12:13:38.606][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-01 12:13:38.607][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-01 12:13:38.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.609][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-01 12:13:38.610][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-01 12:13:38.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.613][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-01 12:13:38.614][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-01 12:13:38.615][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-01 12:13:38.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.618][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-01 12:13:38.619][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-01 12:13:38.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.622][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-01 12:13:38.622][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-01 12:13:38.623][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-01 12:13:38.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.626][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-01 12:13:38.627][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-01 12:13:38.628][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-01 12:13:38.629][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-01 12:13:38.629][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-01 12:13:38.637][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-01 12:13:38.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.641][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-01 12:13:38.642][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-01 12:13:38.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.645][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-01 12:13:38.646][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-01 12:13:38.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.649][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-01 12:13:38.650][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-01 12:13:38.650][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.653][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-01 12:13:38.653][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-01 12:13:38.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.656][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-01 12:13:38.657][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-01 12:13:38.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.660][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-01 12:13:38.661][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-01 12:13:38.678][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-01 12:13:38.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.682][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-01 12:13:38.683][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-01 12:13:38.684][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-01 12:13:38.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.687][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-01 12:13:38.689][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:38.690][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-01 12:13:38.691][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:38.692][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-01 12:13:38.693][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:38.694][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-01 12:13:38.695][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:38.696][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-01 12:13:38.696][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-01 12:13:38.697][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-01 12:13:38.698][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:38.699][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-01 12:13:38.700][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-01 12:13:38.701][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:38.702][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:38.703][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-01 12:13:38.703][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-01 12:13:38.703][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-01 12:13:38.703][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-01 12:13:38.703][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-01 12:13:38.703][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-01 12:13:38.704][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:38.705][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:38.706][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-01 12:13:38.707][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:38.707][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:38.708][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-01 12:13:38.709][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:38.710][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-01 12:13:38.710][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-01 12:13:38.711][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:38.712][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:38.713][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-01 12:13:38.715][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:38.716][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-01 12:13:38.717][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:38.718][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-01 12:13:38.718][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:38.719][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-01 12:13:38.720][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:38.721][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-01 12:13:38.722][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-01 12:13:38.723][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-01 12:13:38.723][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:38.724][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-01 12:13:38.725][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-01 12:13:38.726][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:38.727][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:38.728][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-01 12:13:38.728][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-01 12:13:38.728][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-01 12:13:38.728][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-01 12:13:38.728][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-01 12:13:38.729][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-01 12:13:38.729][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:38.730][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:38.731][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-01 12:13:38.732][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:38.733][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:38.733][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-01 12:13:38.734][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:38.735][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-01 12:13:38.736][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-01 12:13:38.736][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:38.737][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:38.738][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-01 12:13:38.740][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:38.748][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-01 12:13:38.749][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:38.751][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-01 12:13:38.752][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:38.753][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-01 12:13:38.753][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:38.754][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-01 12:13:38.755][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-01 12:13:38.756][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-01 12:13:38.757][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:38.758][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-01 12:13:38.758][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-01 12:13:38.759][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:38.760][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:38.761][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:38.762][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-01 12:13:38.763][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:38.763][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:38.764][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-01 12:13:38.765][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:38.766][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:38.766][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-01 12:13:38.767][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:38.768][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-01 12:13:38.769][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-01 12:13:38.770][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:38.770][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:38.771][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-01 12:13:38.773][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:38.774][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-01 12:13:38.775][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:38.776][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-01 12:13:38.776][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:38.777][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-01 12:13:38.778][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:38.779][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-01 12:13:38.780][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-01 12:13:38.780][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-01 12:13:38.781][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:38.782][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-01 12:13:38.783][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-01 12:13:38.784][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:38.784][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:38.785][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:38.786][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-01 12:13:38.787][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:38.788][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:38.788][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-01 12:13:38.789][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:38.790][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:38.791][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-01 12:13:38.792][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:38.792][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-01 12:13:38.793][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-01 12:13:38.794][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:38.795][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:38.796][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-01 12:13:38.797][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:38.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:38.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.802][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:38.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:38.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.805][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:38.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:38.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:38.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:38.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:38.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:38.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:38.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:38.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.820][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:38.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:38.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:38.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:38.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:38.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:38.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:38.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:38.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:38.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:38.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:38.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:38.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:38.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:38.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:38.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:38.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:38.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:38.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:38.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:38.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:38.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:38.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.876][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-01 12:13:38.878][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-01 12:13:38.879][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-01 12:13:38.880][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-01 12:13:38.881][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-01 12:13:38.883][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-01 12:13:38.884][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-01 12:13:38.885][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-01 12:13:38.886][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-01 12:13:38.888][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-01 12:13:38.889][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-01 12:13:38.891][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-01 12:13:38.892][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-01 12:13:38.894][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-01 12:13:38.895][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-01 12:13:38.896][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-01 12:13:38.897][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-01 12:13:38.899][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-01 12:13:38.900][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-01 12:13:38.901][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-01 12:13:38.902][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-01 12:13:38.904][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-01 12:13:38.905][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-01 12:13:38.907][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-01 12:13:38.908][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-01 12:13:38.909][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-01 12:13:38.910][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-01 12:13:38.912][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-01 12:13:38.913][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-01 12:13:38.914][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-01 12:13:38.915][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-01 12:13:38.916][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-01 12:13:38.918][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-01 12:13:38.919][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-01 12:13:38.920][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-01 12:13:38.921][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-01 12:13:38.922][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-01 12:13:38.924][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-01 12:13:38.925][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-01 12:13:38.926][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-01 12:13:38.927][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-01 12:13:38.928][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-01 12:13:38.930][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-01 12:13:38.931][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-01 12:13:38.932][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-01 12:13:38.941][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-01 12:13:38.942][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-01 12:13:38.944][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-01 12:13:38.945][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-01 12:13:38.946][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-01 12:13:38.947][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-01 12:13:38.948][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-01 12:13:38.950][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-01 12:13:38.951][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-01 12:13:38.952][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-01 12:13:38.953][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-01 12:13:38.955][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-01 12:13:38.957][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-01 12:13:38.958][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-01 12:13:38.959][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-01 12:13:38.961][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-01 12:13:38.962][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-01 12:13:38.963][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-01 12:13:38.964][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-01 12:13:38.965][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-01 12:13:38.967][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-01 12:13:38.968][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-01 12:13:38.969][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-01 12:13:38.970][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-01 12:13:38.972][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-01 12:13:38.973][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-01 12:13:38.974][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-01 12:13:38.975][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-01 12:13:38.976][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-01 12:13:38.978][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-01 12:13:38.979][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-01 12:13:38.980][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-01 12:13:38.981][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-01 12:13:38.982][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-01 12:13:38.984][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-01 12:13:38.985][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-01 12:13:38.986][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-01 12:13:38.987][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-01 12:13:38.988][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-01 12:13:38.990][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-04-01 12:13:38.991][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-01 12:13:38.992][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:38.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:38.994][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:38.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:38.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:38.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:38.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:38.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:38.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:38.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:39.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:39.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:39.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:39.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:39.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:39.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:39.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:39.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:39.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:39.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:39.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:39.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:39.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:39.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:39.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:39.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:39.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:39.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:39.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:39.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:39.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:39.015][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:39.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:39.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:39.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:39.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:39.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:39.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:39.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:39.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:39.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:39.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:39.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:39.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:39.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:39.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:39.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:39.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:39.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:39.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:39.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:39.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:39.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:39.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:39.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:39.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:39.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:39.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:39.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:39.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:39.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:39.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:39.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:39.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:39.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:39.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:39.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:39.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:39.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:39.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:39.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:39.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:39.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:39.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:39.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:39.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:39.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:39.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:39.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:39.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:39.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:39.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:39.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:39.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:39.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:39.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:39.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:39.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:39.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:39.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:39.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:39.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:39.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:39.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:39.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:39.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:39.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:39.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:39.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:39.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:39.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:39.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:39.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:39.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:39.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:39.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:39.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:39.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:39.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:39.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:39.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:39.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:39.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:39.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:39.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:39.090][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-01 12:13:39.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:39.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:39.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:39.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:39.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:39.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:39.096][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-04-01 12:13:39.098][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-04-01 12:13:39.100][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:39.101][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-04-01 12:13:39.102][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:39.103][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-01 12:13:39.104][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:39.105][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-04-01 12:13:39.106][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:39.107][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-01 12:13:39.107][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-01 12:13:39.108][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-01 12:13:39.109][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:39.110][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-04-01 12:13:39.111][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-01 12:13:39.112][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-04-01 12:13:39.112][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-04-01 12:13:39.112][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-04-01 12:13:39.112][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-04-01 12:13:39.112][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-04-01 12:13:39.112][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-04-01 12:13:39.112][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-04-01 12:13:39.112][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-04-01 12:13:39.112][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-04-01 12:13:39.112][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-04-01 12:13:39.112][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-04-01 12:13:39.112][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-04-01 12:13:39.112][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-04-01 12:13:39.112][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-04-01 12:13:39.112][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-04-01 12:13:39.112][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-04-01 12:13:39.112][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-04-01 12:13:39.112][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-04-01 12:13:39.113][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-01 12:13:39.114][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-01 12:13:39.114][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-04-01 12:13:39.114][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-04-01 12:13:39.115][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-01 12:13:39.116][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:39.116][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:39.117][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-01 12:13:39.118][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-01 12:13:39.119][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-01 12:13:39.120][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-01 12:13:39.121][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-01 12:13:39.121][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-04-01 12:13:39.128][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-01 12:13:39.130][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-01 12:13:39.131][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-01 12:13:39.132][self$setPropertyValue]
biodb.DEBUG[2025-04-01 12:13:39.133][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-04-01 12:13:39.135][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-01 12:13:39.136][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-01 12:13:39.138][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-01 12:13:39.140][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-01 12:13:39.143][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-04-01 12:13:39.145][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-04-01 12:13:39.146][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-01 12:13:39.148][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-01 12:13:39.149][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-01 12:13:39.150][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-01 12:13:39.151][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-04-01 12:13:39.152][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-04-01 12:13:39.153][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-01 12:13:39.153][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-04-01 12:13:39.154][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-01 12:13:39.155][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-01 12:13:39.156][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-04-01 12:13:39.157][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-04-01 12:13:39.158][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-01 12:13:39.159][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-01 12:13:39.160][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-01 12:13:39.161][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-01 12:13:39.163][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-01 12:13:39.164][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-01 12:13:39.165][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-04-01 12:13:39.166][biodb::testThat]
biodb.INFO [2025-04-01 12:13:39.167][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-04-01 12:13:39.168][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-01 12:13:39.169][biodb::testThat]
biodb.DEBUG[2025-04-01 12:13:39.171][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-04-01 12:13:39.172][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-04-01 12:13:39.173][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-04-01 12:13:39.177][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:39.178][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:39.180][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-01 12:13:39.181][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:39.182][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-01 12:13:39.183][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-01 12:13:39.185][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-01 12:13:39.186][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-01 12:13:39.187][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-01 12:13:39.187][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-01 12:13:39.188][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-04-01 12:13:39.191][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-04-01 12:13:39.192][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-01 12:13:39.194][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:39.196][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-01 12:13:39.199][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-04-01 12:13:39.201][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-01 12:13:39.203][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-04-01 12:13:39.204][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-01 12:13:39.206][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-01 12:13:39.207][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-01 12:13:39.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-01 12:13:39.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:39.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:39.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:39.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:39.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:39.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-01 12:13:39.223][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:39.224][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:39.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:39.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:39.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.230][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:39.231][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:39.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.234][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:39.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:39.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.238][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:39.239][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:39.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.248][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.250][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:39.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:39.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.253][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:39.254][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:39.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.257][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:39.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:39.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.260][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:39.261][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:39.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:39.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:39.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.268][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:39.269][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:39.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.271][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:39.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:39.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.276][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:39.277][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:39.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.279][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:39.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:39.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.283][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:39.284][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:39.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:39.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:39.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.290][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:39.291][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:39.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:39.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:39.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.297][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:39.298][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:39.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.300][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:39.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:39.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.305][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:39.306][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:39.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:39.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:39.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.312][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:39.313][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:39.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.315][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:39.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:39.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.320][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.321][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.327][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:39.328][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:39.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:39.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:39.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.335][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:39.336][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:39.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:39.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:39.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.364][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:39.365][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:39.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.368][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:39.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:39.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.371][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:39.372][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:39.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.375][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:39.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:39.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.379][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-01 12:13:39.380][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:39.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.381][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.382][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-01 12:13:39.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:39.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:39.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:39.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:39.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:39.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:39.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:39.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.397][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:39.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:39.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.400][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:39.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:39.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.403][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:39.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:39.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.407][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:39.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:39.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.410][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:39.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:39.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.414][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:39.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:39.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:39.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:39.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:39.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:39.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:39.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:39.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:39.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:39.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:39.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:39.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:39.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:39.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:39.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:39.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:39.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:39.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:39.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:39.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:39.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:39.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:39.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:39.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:39.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:39.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:39.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:39.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:39.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:39.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:39.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:39.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.479][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:39.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:39.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.482][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:39.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:39.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.486][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:39.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:39.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:39.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:39.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.494][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:39.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:39.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.498][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:39.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:39.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:39.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:39.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:39.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:39.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:39.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:39.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.523][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:39.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:39.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.526][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:39.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:39.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.529][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:39.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:39.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:39.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:39.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:39.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:39.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:39.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:39.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:39.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:39.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:39.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:39.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:39.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:39.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:39.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:39.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:39.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:39.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:39.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:39.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.575][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:39.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:39.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.579][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:39.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:39.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.582][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:39.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:39.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:39.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:39.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.589][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:39.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:39.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:39.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:39.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.596][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-01 12:13:39.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.610][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-01 12:13:39.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.614][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:39.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:39.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:39.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:39.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:39.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:39.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.625][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:39.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:39.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:39.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:39.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.632][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:39.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:39.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.635][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:39.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:39.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:39.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:39.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.642][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:39.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:39.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:39.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:39.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:39.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:39.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:39.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:39.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:39.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:39.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:39.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:39.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:39.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:39.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:39.676][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-04-01 12:13:39.676][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:39.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:39.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.680][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:39.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:39.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.684][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:39.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:39.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.687][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:39.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:39.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:39.691][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-01 12:13:39.691][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-01 12:13:39.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-01 12:13:39.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:39.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:39.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:39.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:39.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:39.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:39.705][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-04-01 12:13:39.706][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-01 12:13:39.707][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:39.709][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-01 12:13:39.710][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-04-01 12:13:39.712][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-01 12:13:39.713][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-04-01 12:13:39.714][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-01 12:13:39.739][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-01 12:13:39.740][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-01 12:13:39.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-01 12:13:39.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:39.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:39.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:39.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:39.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:39.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-01 12:13:39.757][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:39.758][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:39.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.767][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:39.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:39.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.776][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:39.777][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:39.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.781][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:39.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:39.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.784][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:39.785][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:39.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.787][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.788][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:39.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:39.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.792][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:39.793][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:39.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.796][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:39.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:39.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.799][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:39.800][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:39.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:39.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:39.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.806][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:39.807][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:39.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:39.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:39.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.814][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:39.814][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:39.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.817][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:39.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:39.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.820][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:39.821][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:39.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:39.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:39.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.827][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:39.828][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:39.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:39.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:39.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.834][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:39.835][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:39.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:39.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:39.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.841][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:39.842][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:39.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.844][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.845][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:39.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:39.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.848][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:39.849][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:39.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:39.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:39.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.855][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.856][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.857][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:39.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.870][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:39.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:39.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.874][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:39.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:39.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.881][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:39.882][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:39.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.884][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:39.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:39.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.891][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:39.892][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:39.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.894][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.895][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:39.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:39.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.899][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:39.900][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:39.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:39.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:39.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.906][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-01 12:13:39.907][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:39.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.910][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-01 12:13:39.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:39.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:39.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:39.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:39.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:39.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:39.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:39.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.925][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:39.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:39.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.930][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:39.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:39.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.934][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-01 12:13:39.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-01 12:13:39.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.937][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:39.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:39.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.941][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:39.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:39.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.944][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-01 12:13:39.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-01 12:13:39.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:39.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:39.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:39.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:39.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-01 12:13:39.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-01 12:13:39.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:39.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:39.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:39.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:39.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:39.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-01 12:13:39.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:39.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:39.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:39.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:39.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:39.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-01 12:13:39.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:39.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:39.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:39.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:39.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:39.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:39.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:39.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-01 12:13:39.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:40.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:40.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:40.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:40.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:40.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-01 12:13:40.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.011][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.014][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.018][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.021][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:40.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:40.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.025][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:40.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:40.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.029][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-01 12:13:40.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-01 12:13:40.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:40.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:40.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:40.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:40.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-01 12:13:40.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-01 12:13:40.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:40.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:40.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:40.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:40.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:40.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:40.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.052][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:40.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:40.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.055][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:40.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:40.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.058][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:40.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-01 12:13:40.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:40.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:40.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:40.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:40.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:40.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-01 12:13:40.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:40.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:40.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:40.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:40.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.089][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:40.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:40.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:40.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:40.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:40.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:40.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:40.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-01 12:13:40.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.102][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:40.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:40.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.105][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:40.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:40.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.108][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:40.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-01 12:13:40.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.111][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:40.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:40.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:40.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:40.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-01 12:13:40.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-01 12:13:40.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.121][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-01 12:13:40.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:40.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:40.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:40.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:40.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:40.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-01 12:13:40.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:40.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.134][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-01 12:13:40.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-01 12:13:40.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:40.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:40.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.142][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:40.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:40.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:40.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:40.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:40.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:40.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.153][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-01 12:13:40.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-01 12:13:40.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.156][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:40.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:40.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.159][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:40.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:40.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:40.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:40.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.175][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:40.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-01 12:13:40.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:40.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:40.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:40.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:40.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:40.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:40.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:40.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:40.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:40.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:40.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-01 12:13:40.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-01 12:13:40.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:40.200][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-04-01 12:13:40.201][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.205][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.208][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.211][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:40.215][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-01 12:13:40.215][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-04-01 12:13:40.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-01 12:13:40.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:40.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:40.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:40.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:40.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:40.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:40.233][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-04-01 12:13:40.234][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-04-01 12:13:40.235][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-04-01 12:13:40.249][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:40.251][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:40.253][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-01 12:13:40.254][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:40.255][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-01 12:13:40.256][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-01 12:13:40.257][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-01 12:13:40.258][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-01 12:13:40.259][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-01 12:13:40.260][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-01 12:13:40.260][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-01 12:13:40.262][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.266][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.277][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.283][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.286][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.290][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.293][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:40.296][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-01 12:13:40.297][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-01 12:13:40.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-01 12:13:40.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:40.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:40.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:40.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:40.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:40.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-01 12:13:40.310][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.314][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.317][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.320][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.324][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.327][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.330][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:40.334][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-04-01 12:13:40.335][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-01 12:13:40.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-01 12:13:40.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:40.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:40.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:40.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:40.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:40.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-01 12:13:40.350][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-04-01 12:13:40.351][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-04-01 12:13:40.352][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-04-01 12:13:40.354][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:40.355][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:40.356][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-01 12:13:40.358][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-01 12:13:40.358][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-01 12:13:40.360][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-01 12:13:40.361][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-01 12:13:40.361][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-01 12:13:40.362][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-01 12:13:40.363][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-01 12:13:40.364][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-01 12:13:40.366][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.370][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.380][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.386][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.392][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.395][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.399][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:40.402][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-04-01 12:13:40.403][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-04-01 12:13:40.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-01 12:13:40.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:40.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:40.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:40.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:40.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:40.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-01 12:13:40.415][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.419][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.422][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.425][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.429][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.432][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-01 12:13:40.436][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-01 12:13:40.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-01 12:13:40.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-01 12:13:40.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-01 12:13:40.439][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-01 12:13:40.440][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-01 12:13:40.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-01 12:13:40.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:40.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:40.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:40.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:40.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:40.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-04-01 12:13:40.459][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-01 12:13:40.461][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-04-01 12:13:40.463][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-04-01 12:13:40.463][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-01 12:13:40.464][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-01 12:13:40.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-01 12:13:40.466][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-01 12:13:40.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-01 12:13:40.467][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-01 12:13:40.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  8.932   0.585  29.676

CHECK results for biodbHmdb on kjohnson1

Summary

Command output

Installation output

Tests output

Example timings