Mustafa Erhan Ozer
| Snapshot Date: 2025-03-31 13:00 -0400 (Mon, 31 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-04-02 19:35 -0400 (Wed, 02 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4764 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4495 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4522 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4449 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4426 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-04-02 10:48:43 -0400 (Wed, 02 Apr 2025) |
| EndedAt: 2025-04-02 10:54:17 -0400 (Wed, 02 Apr 2025) |
| EllapsedTime: 334.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 326625,1352,6556,7124,5291,5740
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 148979,407040,80347,4846,4719,5139
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23417,3486,19,435,56652,2161
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22978,5406,5139,1757,5594,3250
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26088,6616,1555,4726,7036,4694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55065,326625,4942,3930,356,1346
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23590,1356,4779,6775,6387,153
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54982,111240474,10559,2158,7274,175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2328,4306,51004,3945,1678,4790
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4609,4153,5468,4233,5743,1557
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5105,2806,64240,7124,7225,1601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55630,64689,3813,23600,55343,91574
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 563,389,81034,7352,6794,479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2745,2776,1789,1802,6517,3952
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51103,2055,51241,1728,79644,8665
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 266,5837,8854,7284,56999,53335
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 356,406991,5009,338821,239,6748
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3554,54539,2695,9180,5068,596
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51649,6329,4314,54578,4720,3480
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10841,23274,22933,819,2847,407045
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1591,1584,10965,2597,1490,3483
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8462,142,8802,2791,476,587
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1581,92667,825,9575,3375,89874
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3291,27125,216,1019,2786,23129
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5369,83985,197131,7840,203859,6492
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4842,5162,54809,549,27235,2146
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10135,5255,779,348,1605,2847
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5743,1571,57570,4502,211,5369
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1803,7284,3155,644974,1909,9919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6576,158,7252,2653,4726,1585
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55967,51181,2629,5096,1075,3638
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1786,6811,5468,9630,104,847
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 30061,4925,5792,7391,3074,3479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23291,4299,2639,84239,477,29880
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6584,51117,4714,4654,9507,653509
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3759,83439,29929,6721,1641,2152
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4915,6390,100303755,55270,2335,1889
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4760,2908,7480,3930,3240,2305
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26521,842,8660,57380,6811,492
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10682,32,5009,1028,599,376497
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 583,57678,8639,1634,7388,10580
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25974,1555,4700,643181,169026,7942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6928,5195,29960,4726,7424,410
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84987,2992,6571,7084,84317,8431
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3945,51611,152926,1312,6183,2746
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81704,3558,4683,5507,10020,958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7919,434,32,158,51116,56623
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3709,6888,54567,1910,650,5443
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9429,1351,155,6390,10667,51117
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 729230,859,29881,2919,7325,83693
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 355,6403,10157,51649,7276,3099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5255,3170,1608,5327,5277,353
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3098,55486,84693,3481,479,3557
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50484,1232,161247,5191,537,3418
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8714,7274,9919,23054,1678,5562
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2710,4543,1497,340024,6351,7167
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2395,570,23410,3667,55065,3375
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4728,11222,7390,4282,29947,3490
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4543,2908,952,216,6261,2878
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 353,23038,5584,8772,2542,1056
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5228,5592,266,7494,2632,652
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1737,4609,81034,124976,9420,1353
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1890,491,29947,4126,116519,6401
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2334,344905,10221,2169,169026,27249
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1591,3709,3486,5919,516,1468
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5274,79572,3813,83439,790,55937
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23163,1351,8050,5256,3490,8813
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4656,594,1230,80270,27235,549
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 253943,55340,1717,4313,113235,8818
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7840,166785,6402,4312,84701,7297
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91574,31,4716,840,10000,54106
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3717,3773,1716,7320,10911,4502
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 266,3685,3995,27010,3073,148738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9572,2063,4709,3773,54901,84701
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2790,5798,26175,2170,9927,5270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5126,50506,54902,5713,23274,8772
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2677,7919,406934,64801,84447,156
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7325,407008,7388,7528,4232,1738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 729238,6236,27429,266,2235,1544
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10250,868,5501,7421,1514,5805
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25813,3490,4502,5741,406922,6261
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64788,51085,1201,1347,253559,3250
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1071,7099,847,471,5288,406938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 161247,2998,2590,3490,5824,221458
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2055,7325,582,1968,1769,3309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3931,80224,5563,5313,205327,81570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1356,6616,2170,10165,57678,581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406913,1584,2495,125170,5327,1649
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7350,1244,7319,3074,54575,2647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8660,1992,183,5654,197322,6925
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23129,64601,2305,4843,116931,123099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23236,4915,100506742,790,5190,1621
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4887,79944,151,3638,5330,81689
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3627,7388,353500,56729,5239,80070
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7052,10730,64131,642489,383,155
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 221458,5406,3034,5071,1718,10935
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3117,3813,156,2305,8431,64240
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6794,338821,2793,4312,3627,3485
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10457,1591,5372,84947,54577,7431
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29968,84572,3425,5009,3123,4247
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8243,5239,4312,284184,23291,79602
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5584,9377,3949,8560,10250,364
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84947,706,2110,1351,3554,1329
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2903,5406,7276,1356,836,4720
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51300,79587,100506742,284184,3425,241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2806,5286,330,4089,3991,1601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 338328,10643,28976,119559,3558,1027
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2170,406922,133,54809,1468,2693
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1508,7056,1348,80201,330,200539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23530,3773,537,1361,4040,4319
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4899,4780,23163,768239,2538,344905
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10020,3627,6647,11093,3417,64241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1595,4878,10135,3081,3565,509
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23590,2487,6492,2936,6786,7292
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2820,374291,3357,5214,158,23274
--> return NULL...
2025-04-02 10:54:06.995 R[16844:344738000] XType: Using static font registry.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
73.286 1.253 75.424
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.987 | 0.051 | 1.583 | |