BioC experimental data: CHECK report for hgu2beta7 on windows1.bioconductor.org
This page was generated on 2015-10-24 18:52:43 -0400 (Sat, 24 Oct 2015).
hgu2beta7 1.10.0
Bioconductor Package Maintainer
| Snapshot Date: 2015-10-24 12:50:03 -0400 (Sat, 24 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/hgu2beta7 | | Last Changed Rev: 3460 / Revision: 3473 | | Last Changed Date: 2015-10-13 16:14:23 -0400 (Tue, 13 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |  |
| windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ WARNINGS ] | OK | |
Summary
| Package: hgu2beta7
|
| Version: 1.10.0
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| Command: rm -rf hgu2beta7.buildbin-libdir hgu2beta7.Rcheck && mkdir hgu2beta7.buildbin-libdir hgu2beta7.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=hgu2beta7.buildbin-libdir hgu2beta7_1.10.0.tar.gz >hgu2beta7.Rcheck\00install.out 2>&1 && cp hgu2beta7.Rcheck\00install.out hgu2beta7-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=hgu2beta7.buildbin-libdir --install="check:hgu2beta7-install.out" --force-multiarch --no-vignettes --timings hgu2beta7_1.10.0.tar.gz
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| StartedAt: 2015-10-24 15:03:28 -0400 (Sat, 24 Oct 2015)
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| EndedAt: 2015-10-24 15:04:05 -0400 (Sat, 24 Oct 2015)
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| EllapsedTime: 36.5 seconds
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| RetCode: 0
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| Status: WARNINGS
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| CheckDir: hgu2beta7.Rcheck
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| Warnings: 3
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Command output
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### Running command:
###
### rm -rf hgu2beta7.buildbin-libdir hgu2beta7.Rcheck && mkdir hgu2beta7.buildbin-libdir hgu2beta7.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=hgu2beta7.buildbin-libdir hgu2beta7_1.10.0.tar.gz >hgu2beta7.Rcheck\00install.out 2>&1 && cp hgu2beta7.Rcheck\00install.out hgu2beta7-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=hgu2beta7.buildbin-libdir --install="check:hgu2beta7-install.out" --force-multiarch --no-vignettes --timings hgu2beta7_1.10.0.tar.gz
###
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* using log directory 'C:/biocbld/bbs-3.2-data-experiment/meat/hgu2beta7.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'hgu2beta7/DESCRIPTION' ... OK
* this is package 'hgu2beta7' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'hgu2beta7' can be installed ... OK
* checking installed package size ... NOTE
installed size is 7.0Mb
sub-directories of 1Mb or more:
data 6.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'data' contains no data sets.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
hgu2beta7: no visible binding for global variable 'hgu2beta7QC'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... WARNING
'library' or 'require' call not declared from: 'annotate'
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
'Rdata.rdb' 'Rdata.rds' 'Rdata.rdx'
Please use e.g. 'inst/extdata' for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [3s] OK
** running examples for arch 'x64' ... [4s] OK
* checking PDF version of manual ... OK
* DONE
Status: 3 WARNINGs, 3 NOTEs
See
'C:/biocbld/bbs-3.2-data-experiment/meat/hgu2beta7.Rcheck/00check.log'
for details.
hgu2beta7.Rcheck/00install.out:
install for i386
* installing *source* package 'hgu2beta7' ...
** R
** data
*** moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
install for x64
* installing *source* package 'hgu2beta7' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'hgu2beta7' as hgu2beta7_1.10.0.zip
* DONE (hgu2beta7)
hgu2beta7.Rcheck/examples_i386/hgu2beta7-Ex.timings:
| name | user | system | elapsed
|
| hgu2beta7ACCNUM | 0.17 | 0.00 | 0.18 |
|
| hgu2beta7CHR | 0.07 | 0.00 | 0.06 |
|
| hgu2beta7CHRLENGTHS | 0 | 0 | 0 |
|
| hgu2beta7CHRLOC | 0.11 | 0.00 | 0.11 |
|
| hgu2beta7ENZYME | 0.06 | 0.00 | 0.07 |
|
| hgu2beta7ENZYME2PROBE | 0 | 0 | 0 |
|
| hgu2beta7GENENAME | 0.10 | 0.00 | 0.09 |
|
| hgu2beta7GO | 0.39 | 0.03 | 0.42 |
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| hgu2beta7GO2ALLPROBES | 0.19 | 0.00 | 0.19 |
|
| hgu2beta7GO2PROBE | 0.03 | 0.00 | 0.03 |
|
| hgu2beta7GRIF | 0.14 | 0.01 | 0.16 |
|
| hgu2beta7LOCUSID | 0.06 | 0.00 | 0.06 |
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| hgu2beta7MAP | 0.06 | 0.00 | 0.06 |
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| hgu2beta7OMIM | 0.07 | 0.00 | 0.06 |
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| hgu2beta7ORGANISM | 0 | 0 | 0 |
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| hgu2beta7PATH | 0.06 | 0.00 | 0.07 |
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| hgu2beta7PATH2PROBE | 0.12 | 0.00 | 0.12 |
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| hgu2beta7PMID | 0.11 | 0.00 | 0.11 |
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| hgu2beta7PMID2PROBE | 0.5 | 0.0 | 0.5 |
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| hgu2beta7REFSEQ | 0.32 | 0.00 | 0.31 |
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| hgu2beta7SUMFUNC | 0.12 | 0.02 | 0.14 |
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| hgu2beta7SYMBOL | 0.13 | 0.00 | 0.13 |
|
| hgu2beta7UNIGENE | 0.12 | 0.00 | 0.12 |
|
hgu2beta7.Rcheck/examples_x64/hgu2beta7-Ex.timings:
| name | user | system | elapsed
|
| hgu2beta7ACCNUM | 0.21 | 0.02 | 0.22 |
|
| hgu2beta7CHR | 0.09 | 0.00 | 0.10 |
|
| hgu2beta7CHRLENGTHS | 0 | 0 | 0 |
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| hgu2beta7CHRLOC | 0.17 | 0.00 | 0.17 |
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| hgu2beta7ENZYME | 0.08 | 0.00 | 0.08 |
|
| hgu2beta7ENZYME2PROBE | 0 | 0 | 0 |
|
| hgu2beta7GENENAME | 0.19 | 0.00 | 0.18 |
|
| hgu2beta7GO | 0.55 | 0.00 | 0.55 |
|
| hgu2beta7GO2ALLPROBES | 0.17 | 0.00 | 0.17 |
|
| hgu2beta7GO2PROBE | 0.03 | 0.00 | 0.03 |
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| hgu2beta7GRIF | 0.19 | 0.01 | 0.21 |
|
| hgu2beta7LOCUSID | 0.07 | 0.02 | 0.09 |
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| hgu2beta7MAP | 0.1 | 0.0 | 0.1 |
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| hgu2beta7OMIM | 0.08 | 0.00 | 0.07 |
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| hgu2beta7ORGANISM | 0 | 0 | 0 |
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| hgu2beta7PATH | 0.11 | 0.00 | 0.11 |
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| hgu2beta7PATH2PROBE | 0 | 0 | 0 |
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| hgu2beta7PMID | 0.29 | 0.01 | 0.32 |
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| hgu2beta7PMID2PROBE | 0.77 | 0.00 | 0.76 |
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| hgu2beta7REFSEQ | 0.14 | 0.02 | 0.16 |
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| hgu2beta7SUMFUNC | 0.17 | 0.00 | 0.17 |
|
| hgu2beta7SYMBOL | 0.17 | 0.00 | 0.17 |
|
| hgu2beta7UNIGENE | 0.16 | 0.00 | 0.16 |
|