BioC 3.2: CHECK report for flowPlots on linux1.bioconductor.org

Package: flowPlots

Version: 1.18.0

Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings flowPlots_1.18.0.tar.gz

StartedAt: 2015-10-27 03:32:51 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 03:33:18 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 26.5 seconds

RetCode: 0

Status:  OK

CheckDir: flowPlots.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings flowPlots_1.18.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.2-bioc/meat/flowPlots.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowPlots/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowPlots’ version ‘1.18.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowPlots’ can be installed ... [1s/1s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘methods’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [12s/12s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.2-bioc/meat/flowPlots.Rcheck/00check.log’
for details.

* installing *source* package ‘flowPlots’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowPlots)

name	user	system	elapsed
GroupListBoxplot	0.127	0.000	0.127
StackedData-class	4.690	0.007	4.698
adultsNeonates	0.001	0.000	0.001
computeMarginalData-methods	1.054	0.000	1.054
computeMarkers-methods	0.001	0.000	0.001
computePFDData-methods	0.942	0.004	0.946
computePFDGroupStatsList	0.227	0.008	0.236
computePFDPartsData-methods	1.830	0.003	1.839
computeProfileData-methods	1.841	0.004	1.847
legendPFDStatsGroupNames	0.075	0.004	0.079
makeBarplotData	0.007	0.004	0.011
makeDataList	0.051	0.000	0.051
makeTernaryData	0.074	0.000	0.073
marginalDF	0.002	0.000	0.002
marginalData-methods	0.002	0.000	0.003
markerMatrix	0.002	0.000	0.001
markers-methods	0.002	0.000	0.002
pfdDF	0.001	0.004	0.001
pfdData-methods	0.000	0.000	0.003
pfdPartsData-methods	0.053	0.000	0.053
pfdPartsList	0.002	0.000	0.002
profileDF	0.001	0.000	0.001
profileData-methods	0.003	0.000	0.002
readStackedData-methods	0.05	0.00	0.05
stackedData-methods	0.066	0.000	0.066