LedPred 1.0.0
Aitor Gonzalez
| Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/LedPred | | Last Changed Rev: 106728 / Revision: 107602 | | Last Changed Date: 2015-07-24 06:44:00 -0700 (Fri, 24 Jul 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ TIMEOUT ] | OK | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf LedPred.buildbin-libdir LedPred.Rcheck && mkdir LedPred.buildbin-libdir LedPred.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=LedPred.buildbin-libdir LedPred_1.0.0.tar.gz >LedPred.Rcheck\00install.out 2>&1 && cp LedPred.Rcheck\00install.out LedPred-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=LedPred.buildbin-libdir --install="check:LedPred-install.out" --force-multiarch --no-vignettes --timings LedPred_1.0.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/LedPred.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'LedPred/DESCRIPTION' ... OK
* this is package 'LedPred' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'LedPred' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License components which are templates and need '+ file LICENSE':
MIT
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'e1071' which was already attached by Depends.
Please remove these calls from your code.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... NOTE
The following files look like leftovers/mistakes:
'LedPred.dvi'
Please remove them from your package.
* checking examples ...
** running examples for arch 'i386' ... [17m] OK
Examples with CPU or elapsed time > 5s
user system elapsed
LedPred 628.99 0.64 634.55
tuneFeatureNb 235.00 0.36 236.31
rankFeatures 124.56 0.40 126.08
mcTune 32.93 0.30 33.79
** running examples for arch 'x64' ... [18m] OK
Examples with CPU or elapsed time > 5s
user system elapsed
LedPred 650.13 0.78 651.65
tuneFeatureNb 234.22 0.11 234.36
rankFeatures 139.95 0.08 140.04
mcTune 38.53 0.12 38.68
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
install for i386
* installing *source* package 'LedPred' ...
** R
** data
*** moving datasets to lazyload DB
Note: the specification for S3 class "AsIs" in package 'jsonlite' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Note: the specification for S3 class "AsIs" in package 'jsonlite' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.
install for x64
* installing *source* package 'LedPred' ...
** testing if installed package can be loaded
Note: the specification for S3 class "AsIs" in package 'jsonlite' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.
* MD5 sums
packaged installation of 'LedPred' as LedPred_1.0.0.zip
* DONE (LedPred)