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BioC 3.2: BUILD report for GlobalAncova on moscato1

This page was generated on 2015-08-20 13:18:14 -0700 (Thu, 20 Aug 2015).

Package 430/1069HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GlobalAncova 3.37.0
Manuela Hummel
Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GlobalAncova
Last Changed Rev: 102594 / Revision: 107602
Last Changed Date: 2015-04-16 13:02:44 -0700 (Thu, 16 Apr 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  ERROR  skipped 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded [ ERROR ] skipped  skipped 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  ERROR  skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: GlobalAncova
Version: 3.37.0
Command: chmod a+r GlobalAncova -R && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data GlobalAncova
StartedAt: 2015-08-19 19:37:13 -0700 (Wed, 19 Aug 2015)
EndedAt: 2015-08-19 19:52:56 -0700 (Wed, 19 Aug 2015)
EllapsedTime: 943.2 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r GlobalAncova -R && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data GlobalAncova
###
##############################################################################
##############################################################################


* checking for file 'GlobalAncova/DESCRIPTION' ... OK
* preparing 'GlobalAncova':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"D:/biocbld/bbs-3.2-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Loading required package: corpcor
Loading required package: globaltest
Loading required package: survival
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following object is masked from 'package:globaltest':

    sort

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, as.vector, cbind, colnames, do.call, duplicated,
    eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply,
    mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
    rank, rbind, rep.int, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unlist, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors
Loading required package: org.Hs.eg.db
Loading required package: DBI


Loading required package: Rgraphviz
Loading required package: graph
Loading required package: grid

Loading required package: annotate
Loading required package: XML

Attaching package: 'XML'

The following object is masked from 'package:graph':

    addNode


Attaching package: 'annotate'

The following object is masked from 'package:Rgraphviz':

    toFile

Loading required package: KEGG.db

KEGG.db contains mappings based on older data because the
  original resource was removed from the the public domain
  before the most recent update was produced. This package
  should now be considered deprecated and future versions of
  Bioconductor may not have it available.  Users who want more
  current data are encouraged to look at the KEGGREST or
  reactome.db packages

Warning: running command '"C:\PROGRA˜2\MIKTEX˜1.9\miktex\bin\texi2dvi.exe" --quiet --pdf "GlobalAncova.tex" --max-iterations=20 -I "D:/biocbld/bbs-3.2-bioc/R/share/texmf/tex/latex" -I "D:/biocbld/bbs-3.2-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: running 'texi2dvi' on 'GlobalAncova.tex' failed

LaTeX errors:
s/GlobalAncova.tex:988:  ==> Fatal error occurred, no output PDF file produced!

Execution halted