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BioC 3.2: BUILD BIN report for rnaSeqMap on oaxaca

This page was generated on 2015-08-24 10:56:27 -0700 (Mon, 24 Aug 2015).

Package 870/1071HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rnaSeqMap 2.27.0
Michal Okoniewski
Snapshot Date: 2015-08-23 16:24:14 -0700 (Sun, 23 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rnaSeqMap
Last Changed Rev: 102594 / Revision: 107696
Last Changed Date: 2015-04-16 13:02:44 -0700 (Thu, 16 Apr 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: rnaSeqMap
Version: 2.27.0
Command: rm -rf rnaSeqMap.buildbin-libdir && mkdir rnaSeqMap.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh rnaSeqMap_2.27.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R rnaSeqMap.buildbin-libdir
StartedAt: 2015-08-24 05:30:16 -0700 (Mon, 24 Aug 2015)
EndedAt: 2015-08-24 05:30:38 -0700 (Mon, 24 Aug 2015)
EllapsedTime: 21.5 seconds
RetCode: 0
Status:  OK 
PackageFile: rnaSeqMap_2.27.0.tgz
PackageFileSize: 565.7 KiB

Command output

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###
### Running command:
###
###   rm -rf rnaSeqMap.buildbin-libdir && mkdir rnaSeqMap.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh rnaSeqMap_2.27.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R rnaSeqMap.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=rnaSeqMap.buildbin-libdir rnaSeqMap_2.27.0.tar.gz'
>>>>>>> 

* installing *source* package ‘rnaSeqMap’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c Rinit.c -o Rinit.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c gcoverage.c -o gcoverage.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c ghistogram.c -o ghistogram.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c regionmining.c -o regionmining.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c splicingind.c -o splicingind.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o rnaSeqMap.so Rinit.o gcoverage.o ghistogram.o regionmining.o splicingind.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/rnaSeqMap.buildbin-libdir/rnaSeqMap/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rnaSeqMap)


>>>>>>> 
>>>>>>> FIXING LINKS FOR rnaSeqMap.buildbin-libdir/rnaSeqMap/libs//rnaSeqMap.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs//rnaSeqMap.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.3.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs//rnaSeqMap.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs//rnaSeqMap.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs//rnaSeqMap.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libquadmath.0.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs//rnaSeqMap.so"