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BioC 3.2: BUILD BIN report for lumi on perceval

This page was generated on 2015-08-24 10:51:20 -0700 (Mon, 24 Aug 2015).

Package 558/1071HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
lumi 2.21.2
Pan Du
Snapshot Date: 2015-08-23 16:24:14 -0700 (Sun, 23 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/lumi
Last Changed Rev: 105796 / Revision: 107696
Last Changed Date: 2015-07-03 20:46:53 -0700 (Fri, 03 Jul 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: lumi
Version: 2.21.2
Command: rm -rf lumi.buildbin-libdir && mkdir lumi.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh lumi_2.21.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R lumi.buildbin-libdir
StartedAt: 2015-08-24 07:00:21 -0700 (Mon, 24 Aug 2015)
EndedAt: 2015-08-24 07:01:01 -0700 (Mon, 24 Aug 2015)
EllapsedTime: 40.6 seconds
RetCode: 0
Status:  OK 
PackageFile: lumi_2.21.2.tgz
PackageFileSize: 8.472 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf lumi.buildbin-libdir && mkdir lumi.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh lumi_2.21.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R lumi.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=lumi.buildbin-libdir lumi_2.21.2.tar.gz'
>>>>>>> 

* installing *source* package ‘lumi’ ...
** R
** data
** inst
** preparing package for lazy loading
Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning in fun(libname, pkgname) : error in rgl_init
** help
Warning: bad markup (extra space?) at lumiMethyR.Rd:18:16
Warning: bad markup (extra space?) at lumiMethyR.Rd:19:28
Warning: bad markup (extra space?) at lumiMethyR.Rd:20:13
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning in fun(libname, pkgname) : error in rgl_init
* DONE (lumi)